TCONS_00028933 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028933
Unique NameTCONS_00028933
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028933 ID=TCONS_00028933|Name=TCONS_00028933|organism=Clytia hemisphaerica|type=transcript|length=765bp
AAATTACGTTCGGAAATGATTACTAACTAGACTAATGGTTGGTGTTAGTG
AGTTGATCAAATGTTCATCATGACACAGCAAATATACCATAGACCGGTGT
GATGCAAGTTGCAAACCAACAAACGATGAAACACCAGCCCCATTTCATAT
CACCATCTTGTGAACCTTCGTGTCCTGTGTAAATTGATAAAGCCAAAACC
ATAAACAAAGGACCTAAGAATAAACAGATTTTTGACTCTTTGGAACTATA
AGTTTGGCGCAACATTCCAGCGATTCCGTTCGCTGCACCGAAACCTTCTA
ACAAGGTTGCCAAGCATGCTAAAATTCGTACAGCTTGTAACCAAGTTGGT
GTCACACTCCAGTATGGATTATCAGTATCACCAATACGGTAGCACTGACC
GTCCATTAAACAATATCTCCATATTCCATACGTTTTGATAGTGACCGAGG
TCTGGTTGGTGAAGATTTGTGTTGTTGGAGTCACTTTTTTGACCCATACA
TCACCAGACATTGCAGCAATGTAAAGAATGGTGCAAAATACACACCCAAC
TGTCACAAGAGTTCGATTTACGTCTAGCGCCATAGTAAAAGTTTTATTCT
ATCTGATGTCGACTTACATGTGATTTGTACTAAAGATAGTTTAAGTGATT
TTTGCGAAGCTCTTTTGCAGCTAACAAGAAGATTTTCAGGCAAAGTTAAT
GATTTATTGAAAAGGTTTTCAGCTTATAGATCCTTGTTTTCCAATGATTT
AAGGCATTGATCCTT
Run BLAST on NCBI

protein sequence of TCONS_00028933-protein

>TCONS_00028933-protein ID=TCONS_00028933-protein|Name=TCONS_00028933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MALDVNRTLVTVGCVFCTILYIAAMSGDVWVKKVTPTTQIFTNQTSVTIK
TYGIWRYCLMDGQCYRIGDTDNPYWSVTPTWLQAVRILACLATLLEGFGA
ANGIAGMLRQTYSSKESKICLFLGPLFMVLALSIYTGHEGSQDGDMKWGW
CFIVCWFATCITPVYGIFAVS
Run BLAST on NCBI

transcript from alignment at sc0000715:36640..37404

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028933 ID=TCONS_00028933|Name=TCONS_00028933|organism=Clytia hemisphaerica|type=transcript|length=765bp|location=Sequence derived from alignment at sc0000715:36640..37404 (Clytia hemisphaerica)
AAGGATCAATGCCTTAAATCATTGGAAAACAAGGATCTATAAGCTGAAAA
CCTTTTCAATAAATCATTAACTTTGCCTGAAAATCTTCTTGTTAGCTGCA
AAAGAGCTTCGCAAAAATCACTTAAACTATCTTTAGTACAAATCACATGT
AAGTCGACATCAGATAGAATAAAACTTTTACTATGGCGCTAGACGTAAAT
CGAACTCTTGTGACAGTTGGGTGTGTATTTTGCACCATTCTTTACATTGC
TGCAATGTCTGGTGATGTATGGGTCAAAAAAGTGACTCCAACAACACAAA
TCTTCACCAACCAGACCTCGGTCACTATCAAAACGTATGGAATATGGAGA
TATTGTTTAATGGACGGTCAGTGCTACCGTATTGGTGATACTGATAATCC
ATACTGGAGTGTGACACCAACTTGGTTACAAGCTGTACGAATTTTAGCAT
GCTTGGCAACCTTGTTAGAAGGTTTCGGTGCAGCGAACGGAATCGCTGGA
ATGTTGCGCCAAACTTATAGTTCCAAAGAGTCAAAAATCTGTTTATTCTT
AGGTCCTTTGTTTATGGTTTTGGCTTTATCAATTTACACAGGACACGAAG
GTTCACAAGATGGTGATATGAAATGGGGCTGGTGTTTCATCGTTTGTTGG
TTTGCAACTTGCATCACACCGGTCTATGGTATATTTGCTGTGTCATGATG
AACATTTGATCAACTCACTAACACCAACCATTAGTCTAGTTAGTAATCAT
TTCCGAACGTAATTT

Coding sequence (CDS) from alignment at sc0000715:36640..37404

>TCONS_00028933 ID=TCONS_00028933|Name=TCONS_00028933|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0000715:36640..37404 (Clytia hemisphaerica)
ATGGCGCTAGACGTAAATCGAACTCTTGTGACAGTTGGGTGTGTATTTTG
CACCATTCTTTACATTGCTGCAATGTCTGGTGATGTATGGGTCAAAAAAG
TGACTCCAACAACACAAATCTTCACCAACCAGACCTCGGTCACTATCAAA
ACGTATGGAATATGGAGATATTGTTTAATGGACGGTCAGTGCTACCGTAT
TGGTGATACTGATAATCCATACTGGAGTGTGACACCAACTTGGTTACAAG
CTGTACGAATTTTAGCATGCTTGGCAACCTTGTTAGAAGGTTTCGGTGCA
GCGAACGGAATCGCTGGAATGTTGCGCCAAACTTATAGTTCCAAAGAGTC
AAAAATCTGTTTATTCTTAGGTCCTTTGTTTATGGTTTTGGCTTTATCAA
TTTACACAGGACACGAAGGTTCACAAGATGGTGATATGAAATGGGGCTGG
TGTTTCATCGTTTGTTGGTTTGCAACTTGCATCACACCGGTCTATGGTAT
ATTTGCTGTGTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016425XLOC_016425Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028933-proteinTCONS_00028933-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028933-exon-sc0000715-1491911889:36640..37404TCONS_00028933-exon-sc0000715-1491911889:36640..37404Clytia hemisphaericaexon
TCONS_00028933-exon-sc0000715-1510915933:36640..37404TCONS_00028933-exon-sc0000715-1510915933:36640..37404Clytia hemisphaericaexon
TCONS_00028933-exon-sc0000715-1575043694:36640..37404TCONS_00028933-exon-sc0000715-1575043694:36640..37404Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000715supercontigsc0000715:36640..37404 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127618	0.248895	0.288991	0.706831	0	0	21.4115	22.042	14.0341	14.5862	8.01622	10.1991	0.381936	0.925502	0	0	0	0.0981942	3.12019	2.69722	0.0616941	0.27083	0.073162	0.532119	0.479561	0.24457	0	0	0	0.0721573
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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