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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028917 ID=TCONS_00028917|Name=TCONS_00028917|organism=Clytia hemisphaerica|type=transcript|length=493bp
GCTTGCCATAGTTGGAGGGATTTATTTACTACTAGCCACTTTATATTAGT
AGGTTCGGTTGAGGCAGAATCAGACGTGCTATGAGCATCATACATGAAGG
GCAGGGAAGCAACTTCCGTGAGGCACGGAGGATTCCAATTTCGAATAAGC
ATGTCTTCCAATTGCGGTTATGTTGTCTTGCGGAAGTGCCCTGAtatata
acatgaaaaccaaCTCGCTTCTTTCGATTTTTTATTCTCCAAATATTTCC
AAGTATGATTTGCTAGAAAACGACCAGCTTTCGAAAGATTTACTCTGCTT
AATGTTCTAGGCTTGAAATTGTCACCAAAGTGTGAAGATGTTGGCGGAAA
TCTCAGCAGTCGCAGTCTTCTCAAGACAACTCTTCAAACCAGGAAGTAAA
TTCCTCTTGCAACAGATTTTGTCAACTTCTACAAGAGCAGTGAAGATGGG
TGCTGGACTTTGTGGTGGCTCGAAGGTCCAAGTGGCAGGtttg Run BLAST on NCBI transcript from alignment at sc0000715:7491..13116- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028917 ID=TCONS_00028917|Name=TCONS_00028917|organism=Clytia hemisphaerica|type=transcript|length=5626bp|location=Sequence derived from alignment at sc0000715:7491..13116- (Clytia hemisphaerica)
GCTTGCCATAGTTGGAGGGATTTATTTACTACTAGCCACTTTATATTAGT
AGGTTCGGTTGAGGCAGAATCAGACGTGCTATGAGCATCATACATGAAGG
GCAGGGAAGCAACTTCCGTGAGGCACGGAGGATTCCAATTTCGAATAAGC
ATGTCTTCCAATTGCGGTTATGTTGTCTTGCGGAAGTGCCCTGATATATA
ACATGAAAACCAACTCGCTTCTTTCGATTTTTTATTCTCCAAATATTTCC
AAGTATGATTTGCTAGAAAACGACCAGCTTTCGAAAGATTTACTCTGCTT
AATGTTCTAGGCTTGAAATTGTCACCAAAGTGTGAAGATGTTGGCGGAAA
TCTCAGCAGTCGCAGTCTTCTCAAGACAACTCTTCAAACCAGGAAGTAAA
TTCCTCTTGCAACAGATTTTGTCAACTTCTACAAGAGCAGGTAAATATTT
ACTTTTCATTTTTAACAAAGGCTCAATTCAAAACTCTTGAATTTGTTGAT
TGCAGGTCTATCCAACAAGGTTTCCATAGCTGATTAATCTCAATTTCTTT
TTTGTTTTGACTGGGCCATTCCAGAATTTGTTTGTAACAGGGGGGCGGAC
GACACAGGATTTCCGAGGGCAAAAGTTTTCACCAAACTTCGAAATTTCCA
AGGCGAGAGAAGAAAATGTGTGAATTTCCAAGGCAATTGAATTAAAAAAG
GCAAAAAAGAGTGGAATTTCCGATGCATTTTGCAAAAGTACATGGATTTT
TATTGGAATTTCCGACCACCACTGGAAAAGGAAAATTATTTCTGAGGCTA
GAAAAAATTGAAAAATGCACGTCGTCCGACGGGGGGTAACAAAAATTTTC
TGGAATGGCCCACTGCGTTTGGATTTTTTCTCCAGAATCATGTCCCATCA
TAAAATCCCTTTCGTCATGCAGGCTAGCTCTAAAGCTCTAAAACAGCATA
TAGTAACTTAAAGACCAGAATATTATGATTCTTCAATTCTTCGTCCCGTG
CCCGCCATTAATGCATTATGCAATCGAACTTTTTACTGACCGAACTAATC
AAACTGCTATTGCTTCAAAAATTGTGAGTGTTCGATTAGGTTCGATTAAT
TTTTTTAATCGAACTTTAATCGTTCAATGGAGTTCGATTAGTTTGATTGT
TCGATTGGTTCGACAAGTTCGATTGATCGGGTCTGGATTATGATGGGAAA
GATCCGAACCTGCGAACAGCGCCAAAAAAAAAACCCGACAATTTTACCGA
CTTTCCGAATCGGGTTTTCTTGTAAATAAACAGTTGGTCAGACGACCCGA
ACGCAATATATTTTTGATTGCCGCCTTTTCTATTTTTCCTTTTTTTTGCA
AAAGTTCTAGGAATGAAAATAAAGGTATAATGATCATTGAATACTATCCA
CTGATGATCTGCGGCACTATCAGTTAGCCACACTAGCGTCCCGCCAAAAT
ACGTACCAAAGATTAATGCTGCGAAAGCGCTATATCGTTTACTTGACTCT
CAAGCAAAAAAATGCACCGCAAAACTTCTAAAGGGATTCATGAAAAAAAN
NNAGACAAATTTTGGTTGGTTGATTTTGGCTGCTGCACGTTTTATTTTGT
TTCCAACTTTCAAGTTTTAATNNACTATCGTAGAACGAAGCTAGAATAGA
CCTTTTTTTAAAGAGGCAGCTATGTTGAATAATTATATACTCCAGCATAA
AAACAATGATACAGCCAGGCATAATTTTTAAAATATGCATGATACAGTAA
TTATGCATGGCTGAATCATTGTTTTTATGCTGGAGTACATAATTATTCAA
CATGGCTGCCTCTTTAAAAAAAGGTCTATCGCTTTGCATACTCTTCGCTT
GAGAAAAAGATGACAGATTGAAGTTTTTCACACGCGCGGGAGCTCGCAGG
CGTTCTGCGAGCGTTCTCGGCTCAATCCTTGGACTGCGCTAAAAATGGTA
GACCTAGCTGAGATAGATCATTTCGATGGAAGTTGTTGGAATGTTTACAA
GGGGGGGTTTCAGGGGGTACCCGATTCCGCAATTCCGCCAAACCGTCTTA
AATTGAACGAAAATTTCGTCACCGAAAATTCCTTTGAAATTCAATATACC
AATTCTGAAATTCCGCAATTTTTTTTGCTAAATTCCGTTTTTCCTCACTA
AAATTGTCTAATTTTCCGTCTCCGTCAGAGAACCCAATTTCCGTAATTCC
GTCTAAATTTTTGCCAAATTCCGCCACTCCGTCCGAAAAAAGGGCCGATT
CCGCTCCTCCGCCAAACGTAAACCCCCCCTTACAAGGCTCTTGACCGAAA
AAACTAAGAAGCTTTTATTTTCTGATCATCGTTTTAATCTGCGATGAAGT
GTTATAAAATTCTTTATAGAAAGTCTCCTATGAAGAGGCTCCAAAAAAAT
TTAGAAAAAAGTCATTAAAAAGTATGTCATTTTTATCTTAACAATTTCGT
AAACTACGTCCACAACCAGCCACAACCACGGAGCTCTGACTTTTAGTTTT
ATCTTTTGTTCTCACTCATTTGGTTTCCGTAATAAAAAGAAAGTTGTTAT
TGTAAACTTTGAACATGCTTAAAATCGAGGTACTTCCGCCACAACTGCCT
GTACCAATCAAAGCAGCAAAATTTCAAAACAAATTTGTTGTCAAAGAGAT
TTAACAGTTAGTGAAAATACAGGCCAGATATCAACAGTCCCATGTTTCAA
CCAATCGTCCCAAGTTAGAATAATTGACGGTACGCAGCTCTACTCAAAGC
TCTATTTTACCATTGTAGAATCTCATATATATTTGCCGCACAAGTATTTT
TGGCGAGTTACTCGCCTATAAAATTGCGGGGTGATGAAAAATTATGCGAG
ATCTTAAAAATTTCATGATACAGTAGCGGGAATTCAGATGTTTCTTGATG
GCTGCTGGATGTGTAATCTCAAATTCAAAAAAGTTATATTAAACATAATT
ATCCATATGACATCATTATAATTAGGAGATATAAATTTTGTAAATTAGGT
TGTTTTGATTTAAATTTGTATTTTAATGACCAGTCATGTTTGACTCCACT
GATGCAAGTTACCTGGCAAGTTATTGGTTTTTTCCTATCTCTCTGAAGAA
AGGAGGAATTTGATGCAAGAGTTGTTAACAATGTGGGCATAAAAATCCTT
GAATAGAAGAAGAGCTTATGATCATAAATCTCTAGTAAAAAATTGGAGAT
TTGATATTTCACAGAAAAGTGCTACCAAGGGGTATTTCGTATTTCGGGTC
CCATATCTCTGAAAGACTTTACCGATTGCCTTGAAATTTGACGACCTTCT
TAACCAAAGGTTGAACTACCACTGGTGTAAAAATGAACGTTACAGCAAAA
GTAGAAAAAATGGTTAATTTTTGCAATCGCAAATTTAACTGCTAAAAGTC
GCAAATTTTTCAACCAAAAATATATTCAAATCGCTTTTGATGGGCATAAA
TCTAAGTGTACGAGTAAAGAAAACTCTTCAACAGTTTGGAAAAGATTGTT
TAAAAATTCATCTTATCAACTCTCCATACACAATAGCAGCAGAGATTTTT
GCTAGATCAGTTTTACCAAACTGAATTTTCTTTGAAAGCAAAAAAAGAAA
AATTAAACCCGTCTGTTGACCCCATACTTTGTTAGCACATCAAAGGGAAA
CTACCAATGAAAACTTTCTCTGATTGTAAATTACTTTAATTGGATTAAAT
TTCGCAAGGTCAAATTTCACGAGCGAAAAGAATTGTGAAATTTTCTGGGT
TTAATTTTGCGAGTCAGAGTTTTGAAAAATTTGGGGTGGATTTAATTTCG
CCAATTAGCCTGAAAACAGTTGAAAAATTGACATTTTTGCCACAAATAGA
GACTTTTGACTAGTTTCTCCACCAAAAATGTGATTTAAAAAATGTTGTGG
CGGATTTAATTTCGCGAAAAATGGCAAAAATTTGCAAAATAGCGAAATTT
AATCTTGCAAAAGTTAATCTGTTTTTAAATTACTTTAATCGTAGAAATTT
TAGCGAGACTAATTTTAGCGTTTTAGGGAATTTTCCCTATTTTCTCTAAA
ATAAATCTTGCTTAAACATGCCGAATCGACAGATCGCTAAAATTTATTCG
CACGACATTTCTTGTTATATTGCCTTGATACATTTTTATCAATAGGAAGG
GTTTCAGTGCAAAGAAATGCTAGAAAACGAATTCAGTCAATAATGTAATA
CGAGTATTCGCTAAATTTTTACACGCATAATTTTTTGAAATTGTGATACG
CTAAAATAAATCCAAAAAAATCAAGATTTTCCTGACTCGCTAATATACGC
TAAAATTAGTCTCGCTAAAATTTCTACAATTAAAGTAGTTGACTTTACAA
CTTTACAACTTTTGTACACCCTAGGCTGCTGATATGCCATCGAAATCTCA
AGTAAATCTCGAGGGGGCTTAAAATGATTGACCAAGAGAGCTCTCACTTG
AAATAATTTGACAATAAAATATTTTCATAAATAGCAAACTCACTAAAATG
ATGCTAAAGAGAACAAAATAACATTTTGAATTTACACATACTTCAGCATA
CTTTGCAGTGTGGTTTGAACCTGAGTTATTCCCTCTGTTAATTATTTAAG
TCCCACACCTATGGCTTATGTGCTATAAGAAAAGAGGCAAAGAGAAAAGA
TTTGTCTTTAAGTCAATTGAAATGATATGTTGGACGGTGAAAAAGAATGC
GGCTATTATATTTTGATTTTTCCCAAGTCAATTGAAATGATTACTACTTA
GATTATTAAAACACAAAATAGAGAAAACTCAACGTTACAGCATGATTTTA
GCTCATTTGCTCATTCCTTGTGTTGAATGAATATTATTGTAACCCTGACT
TTAGAAGAGTAGTGTAGTAGGAGAGGCCAAGTGTGATCCTGTTAGCAATT
TTTGTCTGGGTAATAAGAAATACAAGACAGGGTAAATTTTGCTTTTGGAT
GGAAATCATCTATGTCATGATCTCTGCTTTAGTTAAAAGATTTTGAAATA
CTCGTCCATTAAAATCATGCATATATAAATGTCTTTCTACCATGTTCTTG
TTTATACCAATTGATCTAATTATTTCCTAATTAACACAACATCATCTCGT
AGATCACTTCCATTCTATGTAGATGTGTTTGTGTTTGATTATCTTCTTCA
CATCATAGTGTTAAGAATGTCTGAAGTAAAAAAGTTGTTGGGTAGTCTGA
AGACTTAAAAAAGGTCCTCGACATGGATGAAATATTGTTTATCAGTTTGT
TTGTTTTTAAGCTTAAGAAAACACTATTTGAACAGAACAATGTTTGTTTT
AATAGGTTACGATGATGTAATGTTTTTAAAAAGTCAAGTCCCATCATGAT
TAACAGATATCTGTCTTTAGACTAACCGTTTCACAGAAACATGAGATTTC
GAAATTTTATAGTTGCTAAGACAATTATTTGTTTATCAGATAGACTCATA
GCCTTGTAAAAGGAGTTTTGTCACATTTTTTATTTGTAGGATTTTGGATT
GAAAGTTAATCAGCCTGAAATTATTTGATAGAACATTGTTTTTGGTATTA
GGCAAGTTATCTTGAACTTATAGTGAAGATGGGTGCTGGACTTTGTGGTG
GCTCGAAGGTCCAAGTGGCAGGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028917-exon-sc0000715-1575043694:12677..13116 | TCONS_00028917-exon-sc0000715-1575043694:12677..13116 | Clytia hemisphaerica | exon |
| TCONS_00028917-exon-sc0000715-1575043694:7491..7543 | TCONS_00028917-exon-sc0000715-1575043694:7491..7543 | Clytia hemisphaerica | exon |
| TCONS_00028917-exon-sc0000715-1510915933:12677..13116 | TCONS_00028917-exon-sc0000715-1510915933:12677..13116 | Clytia hemisphaerica | exon |
| TCONS_00028917-exon-sc0000715-1510915933:7491..7543 | TCONS_00028917-exon-sc0000715-1510915933:7491..7543 | Clytia hemisphaerica | exon |
| TCONS_00028917-exon-sc0000715-1491911889:12677..13116 | TCONS_00028917-exon-sc0000715-1491911889:12677..13116 | Clytia hemisphaerica | exon |
| TCONS_00028917-exon-sc0000715-1491911889:7491..7543 | TCONS_00028917-exon-sc0000715-1491911889:7491..7543 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000715 | supercontig | sc0000715:7491..13116 - |
Blast
The following BLAST results are available for this feature:
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