TCONS_00028909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028909
Unique NameTCONS_00028909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028909 ID=TCONS_00028909|Name=TCONS_00028909|organism=Clytia hemisphaerica|type=transcript|length=355bp
GGTAAGATAGTCAAGTGTCTTAGCGAAAGATATAGAAAGGCTAAGATACG
CCGGGAAAGATATTCGAAAATTGAgtgaaaatgacaaattttgggaGAGA
CGTTGATGAGTTACGACCCCTCTTATTATtctaaaatattgatatttcaa
gaagaaaacaaaatcaaaacaatatgaATACAATGGACGATTCACATCAC
TGGGTTGCACCATTTGGGGATTGAAGTGTCACTGGATAAATTCAGATTTC
TTCTTGAGATCATCGTAACCTACAAAGGACTACAGATATCATTTTCATTG
AATGTGTATTTAAAGTATTctaatttttaatgaaaatattctaatttcac
aaaaa
Run BLAST on NCBI

transcript from alignment at sc0000714:156213..156567

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028909 ID=TCONS_00028909|Name=TCONS_00028909|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000714:156213..156567 (Clytia hemisphaerica)
tttttgtgaaattagaatattttcattaaaaattagAATACTTTAAATAC
ACATTCAATGAAAATGATATCTGTAGTCCTTTGTAGGTTACGATGATCTC
AAGAAGAAATCTGAATTTATCCAGTGACACTTCAATCCCCAAATGGTGCA
ACCCAGTGATGTGAATCGTCCATTGTATtcatattgttttgattttgttt
tcttcttgaaatatcaatattttagaATAATAAGAGGGGTCGTAACTCAT
CAACGTCTCtcccaaaatttgtcattttcacTCAATTTTCGAATATCTTT
CCCGGCGTATCTTAGCCTTTCTATATCTTTCGCTAAGACACTTGACTATC
TTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016418XLOC_016418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028909-exon-sc0000714-1491911889:156213..156567TCONS_00028909-exon-sc0000714-1491911889:156213..156567Clytia hemisphaericaexon
TCONS_00028909-exon-sc0000714-1510915933:156213..156567TCONS_00028909-exon-sc0000714-1510915933:156213..156567Clytia hemisphaericaexon
TCONS_00028909-exon-sc0000714-1575043694:156213..156567TCONS_00028909-exon-sc0000714-1575043694:156213..156567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000714supercontigsc0000714:156213..156567 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21499	1.18481	0	0	1.31079	0.776851	5.8817	6.14201	2.80979	4.76464	2.21571	3.39854	1.6161	1.91411	0.76883	0.888457	0.504383	1.68275	5.37453	4.59519	1.40967	1.71896	0.630407	0.759909	0	0.931375	1.99919	0.355599	1.34854	0.647756
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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