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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028907 ID=TCONS_00028907|Name=TCONS_00028907|organism=Clytia hemisphaerica|type=transcript|length=1443bp
GACAATGGTAAGTTGTGACATGTacaatttttacaaatctttaAACTCTT
AAACTACTAATAATTTTACAAACTTATGTATAGTTTATTTACATGAAGAC
AATTTTGGTAGAAGGTTATCTCTACAAGTCCAAAAACTGGTTACATTATA
AGGGAGTTATTTTACAAACCAATCATAATATGTTCGATTCTACACTAGCC
CTTGCAAACCTTCGTGATCTGGTATTGAATTCACGCTTAAAGTACGGTTT
ACACTTCAAAATCGAGCGTACAACCATCCACAGATCGTAGCGAAATCGTT
CATCCAATAAACTGTAAATCAAACCGTTGACAAAGCAATGGAAATACTTC
ATCCAAGAAAACAGAGTCAATGTTCGGAAATCCACCAGATGTAATTTACG
ATATAGGAATAGGTAATGATAAAGGTGCGTCGGGAACATGCAAAAGAAGA
AAGCCAGCGAGATAGTGACAAGGATATGTATTTTTAGTTTGATACCCCAT
TGGAAAGGTGTCTTGTGGCGTCTTTGTGTTTTAGCTTTACTTGAACAGCA
ACATAAAAGAACTTTCTGTAGCAGCTGGTAGATCAATGAATGCTTTGACG
CGTTTTCGTTCTCGTTTTCTGGAAGAAAAACTGAGTCTGAGCTACTGGTT
CTATCTGACAGTTTTGGTGTTTTCTGGGAGGATCTCTTGGTTGATGCTTT
ACTACAAATACTTTGATGGAGCACCATTGCCTGGCCAAGGACTTTTGACA
TTCTGTTGCTATGGTTTTTGATATGAATACAGATCATGATGTGCAATATG
GTTGTCAGGAGCAACGGTAATCCAACAAAGATCACAAATAAAATGTTTCT
ATAAATCTTATCAAAACCGACAAACGGGTATTTGGGTGTGCAAATTCTTG
CATTAGGGTATGTTATGACTTGTAAGTAAAAAGCTTGTGGGAACAGAACA
CCGATCGTGAAAAACCAAATCAAAGCTGCAATCATCATAAGAGTTCTCAA
TCGAATGCGTTGAGCAAGTGGTTTTATTGTTCCTTGGTATCTCTCGAAAG
CCAGCAGCACCATAAACAGCCCTGGTATATCACCAGTGATACATTGAAGT
GGTTTAATAAACTGACAAGCACCTTCGCTCCATGGCCATCGGAAATTTTC
TGAATATATATCACAAATGATAAGGATTGAGAATGTCAAATCAGCTGCAG
CAATGTTCGTGATGATGAAGTGGTAATGTGAGATTCGCCGACGTTGGATC
AGCTTGAATAAACGGACAAGAAGAACCAGACCATTGAACAAGACACCAAA
GACCATGGACACGACTTGGATGGTGAAAATACAATCGATGCACAACATCT
TTTTGGAACTTACTGGTGTGTAAAATTCCAGTTATTTTGTACTATatctg
aaaaaatgaaatggaaATTATTACATTCTGTTAAATTTACGAC Run BLAST on NCBI protein sequence of TCONS_00028907-protein >TCONS_00028907-protein ID=TCONS_00028907-protein|Name=TCONS_00028907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MLCIDCIFTIQVVSMVFGVLFNGLVLLVRLFKLIQRRRISHYHFIITNIA
AADLTFSILIICDIYSENFRWPWSEGACQFIKPLQCITGDIPGLFMVLLA
FERYQGTIKPLAQRIRLRTLMMIAALIWFFTIGVLFPQAFYLQVITYPNA
RICTPKYPFVGFDKIYRNILFVIFVGLPLLLTTILHIMICIHIKNHSNRM
SKVLGQAMVLHQSICSKASTKRSSQKTPKLSDRTSSSDSVFLPENENENA
SKHSLIYQLLQKVLLCCCSSKAKTQRRHKTPFQWGIKLKIHILVTISLAF
FFCMFPTHLYHYLFLYRKLHLVDFRTLTLFSWMKYFHCFVNGLIYSLLDE
RFRYDLWMVVRSILKCKPYFKREFNTRSRRFARASVESNIL Run BLAST on NCBI transcript from alignment at sc0000714:146310..147752 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028907 ID=TCONS_00028907|Name=TCONS_00028907|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at sc0000714:146310..147752 (Clytia hemisphaerica)
GTCGTAAATTTAACAGAATGTAATAATttccatttcattttttcagatAT
AGTACAAAATAACTGGAATTTTACACACCAGTAAGTTCCAAAAAGATGTT
GTGCATCGATTGTATTTTCACCATCCAAGTCGTGTCCATGGTCTTTGGTG
TCTTGTTCAATGGTCTGGTTCTTCTTGTCCGTTTATTCAAGCTGATCCAA
CGTCGGCGAATCTCACATTACCACTTCATCATCACGAACATTGCTGCAGC
TGATTTGACATTCTCAATCCTTATCATTTGTGATATATATTCAGAAAATT
TCCGATGGCCATGGAGCGAAGGTGCTTGTCAGTTTATTAAACCACTTCAA
TGTATCACTGGTGATATACCAGGGCTGTTTATGGTGCTGCTGGCTTTCGA
GAGATACCAAGGAACAATAAAACCACTTGCTCAACGCATTCGATTGAGAA
CTCTTATGATGATTGCAGCTTTGATTTGGTTTTTCACGATCGGTGTTCTG
TTCCCACAAGCTTTTTACTTACAAGTCATAACATACCCTAATGCAAGAAT
TTGCACACCCAAATACCCGTTTGTCGGTTTTGATAAGATTTATAGAAACA
TTTTATTTGTGATCTTTGTTGGATTACCGTTGCTCCTGACAACCATATTG
CACATCATGATCTGTATTCATATCAAAAACCATAGCAACAGAATGTCAAA
AGTCCTTGGCCAGGCAATGGTGCTCCATCAAAGTATTTGTAGTAAAGCAT
CAACCAAGAGATCCTCCCAGAAAACACCAAAACTGTCAGATAGAACCAGT
AGCTCAGACTCAGTTTTTCTTCCAGAAAACGAGAACGAAAACGCGTCAAA
GCATTCATTGATCTACCAGCTGCTACAGAAAGTTCTTTTATGTTGCTGTT
CAAGTAAAGCTAAAACACAAAGACGCCACAAGACACCTTTCCAATGGGGT
ATCAAACTAAAAATACATATCCTTGTCACTATCTCGCTGGCTTTCTTCTT
TTGCATGTTCCCGACGCACCTTTATCATTACCTATTCCTATATCGTAAAT
TACATCTGGTGGATTTCCGAACATTGACTCTGTTTTCTTGGATGAAGTAT
TTCCATTGCTTTGTCAACGGTTTGATTTACAGTTTATTGGATGAACGATT
TCGCTACGATCTGTGGATGGTTGTACGCTCGATTTTGAAGTGTAAACCGT
ACTTTAAGCGTGAATTCAATACCAGATCACGAAGGTTTGCAAGGGCTAGT
GTAGAATCGAACATATTATGATTGGTTTGTAAAATAACTCCCTTATAATG
TAACCAGTTTTTGGACTTGTAGAGATAACCTTCTACCAAAATTGTCTTCA
TGTAAATAAACTATACATAAGTTTGTAAAATTATTAGTAGTTTAAGAGTT
taaagatttgtaaaaattgtACATGTCACAACTTACCATTGTC Coding sequence (CDS) from alignment at sc0000714:146310..147752 >TCONS_00028907 ID=TCONS_00028907|Name=TCONS_00028907|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at sc0000714:146310..147752 (Clytia hemisphaerica)
ATGTTGTGCATCGATTGTATTTTCACCATCCAAGTCGTGTCCATGGTCTT
TGGTGTCTTGTTCAATGGTCTGGTTCTTCTTGTCCGTTTATTCAAGCTGA
TCCAACGTCGGCGAATCTCACATTACCACTTCATCATCACGAACATTGCT
GCAGCTGATTTGACATTCTCAATCCTTATCATTTGTGATATATATTCAGA
AAATTTCCGATGGCCATGGAGCGAAGGTGCTTGTCAGTTTATTAAACCAC
TTCAATGTATCACTGGTGATATACCAGGGCTGTTTATGGTGCTGCTGGCT
TTCGAGAGATACCAAGGAACAATAAAACCACTTGCTCAACGCATTCGATT
GAGAACTCTTATGATGATTGCAGCTTTGATTTGGTTTTTCACGATCGGTG
TTCTGTTCCCACAAGCTTTTTACTTACAAGTCATAACATACCCTAATGCA
AGAATTTGCACACCCAAATACCCGTTTGTCGGTTTTGATAAGATTTATAG
AAACATTTTATTTGTGATCTTTGTTGGATTACCGTTGCTCCTGACAACCA
TATTGCACATCATGATCTGTATTCATATCAAAAACCATAGCAACAGAATG
TCAAAAGTCCTTGGCCAGGCAATGGTGCTCCATCAAAGTATTTGTAGTAA
AGCATCAACCAAGAGATCCTCCCAGAAAACACCAAAACTGTCAGATAGAA
CCAGTAGCTCAGACTCAGTTTTTCTTCCAGAAAACGAGAACGAAAACGCG
TCAAAGCATTCATTGATCTACCAGCTGCTACAGAAAGTTCTTTTATGTTG
CTGTTCAAGTAAAGCTAAAACACAAAGACGCCACAAGACACCTTTCCAAT
GGGGTATCAAACTAAAAATACATATCCTTGTCACTATCTCGCTGGCTTTC
TTCTTTTGCATGTTCCCGACGCACCTTTATCATTACCTATTCCTATATCG
TAAATTACATCTGGTGGATTTCCGAACATTGACTCTGTTTTCTTGGATGA
AGTATTTCCATTGCTTTGTCAACGGTTTGATTTACAGTTTATTGGATGAA
CGATTTCGCTACGATCTGTGGATGGTTGTACGCTCGATTTTGAAGTGTAA
ACCGTACTTTAAGCGTGAATTCAATACCAGATCACGAAGGTTTGCAAGGG
CTAGTGTAGAATCGAACATATTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028907-exon-sc0000714-1491911889:146310..147752 | TCONS_00028907-exon-sc0000714-1491911889:146310..147752 | Clytia hemisphaerica | exon |
| TCONS_00028907-exon-sc0000714-1510915933:146310..147752 | TCONS_00028907-exon-sc0000714-1510915933:146310..147752 | Clytia hemisphaerica | exon |
| TCONS_00028907-exon-sc0000714-1575043694:146310..147752 | TCONS_00028907-exon-sc0000714-1575043694:146310..147752 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000714 | supercontig | sc0000714:146310..147752 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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