TCONS_00028905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028905
Unique NameTCONS_00028905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028905 ID=TCONS_00028905|Name=TCONS_00028905|organism=Clytia hemisphaerica|type=transcript|length=488bp
GACGCTTACAGGATTTTTCGGAAACTATTTGGGGGACGTTAGCAAGAATT
TCGAGATCCATTATTCTGTTTATTCCACTTTTTCATtgtatctcattaaa
aaattagAANTTTGGGGACGATAGCAAGAATTTCGAGATCCATTATTCTG
TTTATTCCACTTTTTCATtgtatctcattaaaaaattagaaaaaaactaT
TACAatatcgaacgttcgaatttgtcAAAAAGCCGCGATGTGGAATCACG
ACCTTTGTGTCTATCgtacaagaaaatattttgctaaCAATACATTATAT
AGCGGTAGCCTTAATATAAACGCAATATTTAGTGCTCAAAAAGATACAGC
TTATAAAATATCCATCATTTTAAAATCGTTAAAACATGGCGAATACGCTT
ACAACATAATTAAGGAATGGTGGCTAAtaacttaaaaataaataaaacag
ttTTCATACTTTTGATGACATTcttagaaaaataaaac
Run BLAST on NCBI

transcript from alignment at sc0000714:135263..135750

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028905 ID=TCONS_00028905|Name=TCONS_00028905|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at sc0000714:135263..135750 (Clytia hemisphaerica)
gttttatttttctaagAATGTCATCAAAAGTATGAAaactgttttattta
tttttaagttaTTAGCCACCATTCCTTAATTATGTTGTAAGCGTATTCGC
CATGTTTTAACGATTTTAAAATGATGGATATTTTATAAGCTGTATCTTTT
TGAGCACTAAATATTGCGTTTATATTAAGGCTACCGCTATATAATGTATT
GttagcaaaatattttcttgtacGATAGACACAAAGGTCGTGATTCCACA
TCGCGGCTTTTTgacaaattcgaacgttcgatatTGTAAtagtttttttc
taattttttaatgagatacaATGAAAAAGTGGAATAAACAGAATAATGGA
TCTCGAAATTCTTGCTATCGTCCCCAAANTTctaattttttaatgagata
caATGAAAAAGTGGAATAAACAGAATAATGGATCTCGAAATTCTTGCTAA
CGTCCCCCAAATAGTTTCCGAAAAATCCTGTAAGCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016414XLOC_016414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028905-exon-sc0000714-1491911889:135263..135750TCONS_00028905-exon-sc0000714-1491911889:135263..135750Clytia hemisphaericaexon
TCONS_00028905-exon-sc0000714-1510915933:135263..135750TCONS_00028905-exon-sc0000714-1510915933:135263..135750Clytia hemisphaericaexon
TCONS_00028905-exon-sc0000714-1575043694:135263..135750TCONS_00028905-exon-sc0000714-1575043694:135263..135750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000714supercontigsc0000714:135263..135750 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.5345	40.1765	141.53	184.385	8.40266	2.71016	3.26969	4.28547	8.57245	9.55652	8.24515	6.52098	6.93477	5.62094	5.41544	5.8116	14.6052	9.68638	8.38081	10.8917	38.2362	41.3784	51.4672	36.5846	2.18442	1.34031	53.5292	48.754	42.7648	39.6881
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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