TCONS_00028902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028902
Unique NameTCONS_00028902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028902 ID=TCONS_00028902|Name=TCONS_00028902|organism=Clytia hemisphaerica|type=transcript|length=558bp
CCTACAATCAAAAACAACTCTATTTAGAAACGAACGGtcaaattttgctg
caaaataCAGTCTTTTTAGTTTCGCTTCCTCCGTGCAATTGATACTTCAA
AACACCAGAGAGTTTGTTATTACACTCTGCCCTTTTCACAGACCTAGTGG
AGAGGGAGAATTTTATTCcgataaacaaatcctcactgcaaaacatCGTA
CTATTTTTTGCATCCTCACTGAATTTTTCCGGCCCACTATACTTGGAACG
TACCCCTTTTACAAAGGACAATTCCCGACTGATCAATATGAAGCAACGGT
GTAGAAAGAACTATCAAAATGGAGCAACATATTTTACTATCTATAAATTT
ACTTTTCAACTATGAATATCATGCACTCGAATACTACCACAATAATATCC
TTTTTTGTTGATGAACTACTTAtaaaaactttcgaagctcttTACAACAA
ATCCTCTAAATGAATTACAGCTTTGATTACAAAAGTGCAAATCATACTAC
CAAGAATCGCATCAAACCGTATTTGACAGTCTTAAAGCTCTAAGCCATTT
GACTTTCT
Run BLAST on NCBI

transcript from alignment at sc0000714:48192..48749

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028902 ID=TCONS_00028902|Name=TCONS_00028902|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at sc0000714:48192..48749 (Clytia hemisphaerica)
AGAAAGTCAAATGGCTTAGAGCTTTAAGACTGTCAAATACGGTTTGATGC
GATTCTTGGTAGTATGATTTGCACTTTTGTAATCAAAGCTGTAATTCATT
TAGAGGATTTGTTGTAaagagcttcgaaagtttttaTAAGTAGTTCATCA
ACAAAAAAGGATATTATTGTGGTAGTATTCGAGTGCATGATATTCATAGT
TGAAAAGTAAATTTATAGATAGTAAAATATGTTGCTCCATTTTGATAGTT
CTTTCTACACCGTTGCTTCATATTGATCAGTCGGGAATTGTCCTTTGTAA
AAGGGGTACGTTCCAAGTATAGTGGGCCGGAAAAATTCAGTGAGGATGCA
AAAAATAGTACGatgttttgcagtgaggatttgtttatcgGAATAAAATT
CTCCCTCTCCACTAGGTCTGTGAAAAGGGCAGAGTGTAATAACAAACTCT
CTGGTGTTTTGAAGTATCAATTGCACGGAGGAAGCGAAACTAAAAAGACT
GtattttgcagcaaaatttgaCCGTTCGTTTCTAAATAGAGTTGTTTTTG
ATTGTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016411XLOC_016411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028902-exon-sc0000714-1491911889:48192..48749TCONS_00028902-exon-sc0000714-1491911889:48192..48749Clytia hemisphaericaexon
TCONS_00028902-exon-sc0000714-1510915933:48192..48749TCONS_00028902-exon-sc0000714-1510915933:48192..48749Clytia hemisphaericaexon
TCONS_00028902-exon-sc0000714-1575043694:48192..48749TCONS_00028902-exon-sc0000714-1575043694:48192..48749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000714supercontigsc0000714:48192..48749 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.137088	0.974959	0.784165	0	0.0856631	0.212215	0	0	0.135216	0.631903	0	0.247784	0.0763123	0	1.83705	2.03542	0.0982862	0.143822	0.233112	0.105966	0.109143	0.487037	0.13939	0	2.70791	0.689733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top