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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028896 ID=TCONS_00028896|Name=TCONS_00028896|organism=Clytia hemisphaerica|type=transcript|length=1013bp
CTCTTATACCTCAATACCGGACACATGCAGTGCAATGCCTTTGAACGGCC
AGTGGAAAAAAGTGAACCTCAATTTTCGCCTCATTGTTACTTTGGTAATT
CCTCTTCTTTCTACCATTTTCTTTCACTACAAGCTTTACAATTTCATTAG
AACGCATGTTCGGAATATGTCCCTTATATGCGATGGTTCGTCCCAGCTTT
TCAATAACCCAACATTCTGCAAACCATCCGAGTCAGGTGGTGGTATTGCT
CAGAAGAAAGCAACCAGACATCATTCGACAGGAAGCACAAATAGTGAACG
TCCGAGAAAAGCTACAAGACAAACATCGACTTGCAGCACTGGGGATATTG
GTACGTCAAGAAAGGCTTCAAGACAATGCTCCTTGGATCCAAGCGATATT
TCAAACTACAGCGAAGGAAGAAGATGCTCTTACCAAGGCCTCTCAGAGGA
AAGAATGTTGATTTCACCAATCATCAAAGAAGCCACCCCTTTCACCCAAG
AAGAATTTCATGTAAAAGAAGCAAATAATTCTCAAAGCAAAGTCGTCAAA
TTTCTACATATCTTATTTCATCAAGACAATTGGAAGACAAGTCGATCCTC
GGTCACCAAGAAGCCCAAGATCTCAATCACCAGAGCTCCACATCCAGTCA
CCAAAACCATCCGCCTGAAGATCCACATTCTGTACGCTATCTCGGTCGCT
CTTTTCGTTCTCTGGTTTCCTACCTATCTCTGGCTTTACCTCCACGCTTA
TAACTGGAAATTAGTTATTCACCACATGAATTGGAATGTGTTGGTAGCGT
TCACATATGTTCGTTATTTACATTGTTCGGTTAATGGCGTTATCTACAGT
GTTATCGATAAGACTTTTCGAGACGATGTCAGGAAGGTGTTGAAGACCTT
GGATATCTTTCAGATGTATCAATGGAGTTCCAATGAGATACCAAGCACTC
GCACCTCTCGAACAGCTAGCTTTGACTCCTTCGGTAAAAGTGCAAGTGCA
ATGCAATGGAAAG Run BLAST on NCBI protein sequence of TCONS_00028896-protein >TCONS_00028896-protein ID=TCONS_00028896-protein|Name=TCONS_00028896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
SYTSIPDTCSAMPLNGQWKKVNLNFRLIVTLVIPLLSTIFFHYKLYNFIR
THVRNMSLICDGSSQLFNNPTFCKPSESGGGIAQKKATRHHSTGSTNSER
PRKATRQTSTCSTGDIGTSRKASRQCSLDPSDISNYSEGRRCSYQGLSEE
RMLISPIIKEATPFTQEEFHVKEANNSQSKVVKFLHILFHQDNWKTSRSS
VTKKPKISITRAPHPVTKTIRLKIHILYAISVALFVLWFPTYLWLYLHAY
NWKLVIHHMNWNVLVAFTYVRYLHCSVNGVIYSVIDKTFRDDVRKVLKTL
DIFQMYQWSSNEIPSTRTSRTASFDSFGKSASAMQWK Run BLAST on NCBI transcript from alignment at sc0000714:148667..149748- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028896 ID=TCONS_00028896|Name=TCONS_00028896|organism=Clytia hemisphaerica|type=transcript|length=1082bp|location=Sequence derived from alignment at sc0000714:148667..149748- (Clytia hemisphaerica)
CTCTTATACCTCAATACCGGACACATGCAGTGCAATGCCTTTGAACGGCC
AGTGGAAAAAAGTGAACCTCAATTTTCGCCTCATTGTTACTTTGGTAATT
CCTCTTCTTTCTACCATTTTCTTTCACTACAAGCTTTACAATTTCATTAG
AACGCATGTTCGGAATATGTCCCTTATATGCGATGGTTCGTCCCAGCTTT
TCAATAACCCAACATTCTGCAAACCATCCGAGTCAGGTGGTGGTATTGCT
CAGAAGAAAGCAACCAGACATCATTCGACAGGAAGCACAAATAGTGAACG
TCCGAGAAAAGCTACAAGACAAACATCGACTTGCAGCACTGGGGATATTG
GTACGTCAAGAAAGGCTTCAAGACAATGCTCCTTGGATCCAAGCGATATT
TCAAACTACAGCGAAGGAAGAAGATGCTCTTACCAAGGCCTCTCAGAGGA
AAGAATGTTGATTTCACCAATCATCAAAGAAGCCACCCCTTTCACCCAAG
AAGAATTTCATGTAAAAGAAGCAAATAATTCTCAAAGCAAAGTCGTCAAA
TTTCTACATATCTTATTTCATCAAGACAATTGGAAGACAAGTCGATCCTC
GGTCACCAAGAAGCCCAAGATCTCAATCACCAGAGCTCCACATCCAGTCA
CCAAAACCATCCGCCTGAAGATCCACATTCTGTACGCTATCTCGGTCGCT
CTTTTCGTTCTCTGGTTTCCTACCTATCTCTGGCTTTACCTCCACGCTTA
TAACTGGAAATTAGTTATTCACCACATGAATTGGAATGTGCTGGTGGCGT
TCACATATGTTCGTTATTTGCATTGTTCAGTCAATGGCATCNACATGAAT
TGGAATGTGTTGGTAGCGTTCACATATGTTCGTTATTTACATTGTTCGGT
TAATGGCGTTATCTACAGTGTTATCGATAAGACTTTTCGAGACGATGTCA
GGAAGGTGTTGAAGACCTTGGATATCTTTCAGATGTATCAATGGAGTTCC
AATGAGATACCAAGCACTCGCACCTCTCGAACAGCTAGCTTTGACTCCTT
CGGTAAAAGTGCAAGTGCAATGCAATGGAAAG Coding sequence (CDS) from alignment at sc0000714:148667..149748- >TCONS_00028896 ID=TCONS_00028896|Name=TCONS_00028896|organism=Clytia hemisphaerica|type=CDS|length=2022bp|location=Sequence derived from alignment at sc0000714:148667..149748- (Clytia hemisphaerica)
ATGAATTGGAATGTGTTGGTAGCGTTCACATATGTTCGTTATTTACATTG
TTCGGTTAATGGCGTTATCTACAGTGTTATCGATAAGACTTTTCGAGACG
ATGTCAGGAAGGTGTTGAAGACCTTGGATATCTTTCAGATGTATCAATGG
AGTTCCAATGAGATACCAAGCACTCGCACCTCTCGAACAGCTAGCTTTGA
CTCCTTCGGTAAAAGTGCAAGTGCAATGCAATGGAAATCTTATACCTCAA
TACCGGACACATGCAGTGCAATGCCTTTGAACGGCCAGTGGAAAAAAGTG
AACCTCAATTTTCGCCTCATTGTTACTTTGGTAATTCCTCTTCTTTCTAC
CATTTTCTTTCACTACAAGCTTTACAATTTCATTAGAACGCATGTTCGGA
ATATGTCCCTTATATGCGATGGTTCGTCCCAGCTTTTCAATAACCCAACA
TTCTGCAAACCATCCGAGTCAGGTGGTGGTATTGCTCAGAAGAAAGCAAC
CAGACATCATTCGACAGGAAGCACAAATAGTGAACGTCCGAGAAAAGCTA
CAAGACAAACATCGACTTGCAGCACTGGGGATATTGGTACGTCAAGAAAG
GCTTCAAGACAATGCTCCTTGGATCCAAGCGATATTTCAAACTACAGCGA
AGGAAGAAGATGCTCTTACCAAGGCCTCTCAGAGGAAAGAATGTTGATTT
CACCAATCATCAAAGAAGCCACCCCTTTCACCCAAGAAGAATTTCATGTA
AAAGAAGCAAATAATTCTCAAAGCAAAGTCGTCAAATTTCTACATATCTT
ATTTCATCAAGACAATTGGAAGACAAGTCGATCCTCGGTCACCAAGAAGC
CCAAGATCTCAATCACCAGAGCTCCACATCCAGTCACCAAAACCATCCGC
CTGAAGATCCACATTCTGTACGCTATCTCGGTCGCTCTTTTCGTTCTCTG
GTTTCCTACCTATCTCTGGCTTTACCTCCACGCTTATAACTGGAAATTAG
TTATTCACCACATGAATTGGAATGTGTTGGTAGCGTTCACATATGTTCGT
TATTTACATTGTTCGGTTAATGGCGTTATCTACAGTGTTATCGATAAGAC
TTTTCGAGACGATGTCAGGAAGGTGTTGAAGACCTTGGATATCTTTCAGA
TGTATCAATGGAGTTCCAATGAGATACCAAGCACTCGCACCTCTCGAACA
GCTAGCTTTGACTCCTTCGGTAAAAGTGCAAGTGCAATGCAATGGAAATC
TTATACCTCAATACCGGACACATGCAGTGCAATGCCTTTGAACGGCCAGT
GGAAAAAAGTGAACCTCAATTTTCGCCTCATTGTTACTTTGGTAATTCCT
CTTCTTTCTACCATTTTCTTTCACTACAAGCTTTACAATTTCATTAGAAC
GCATGTTCGGAATATGTCCCTTATATGCGATGGTTCGTCCCAGCTTTTCA
ATAACCCAACATTCTGCAAACCATCCGAGTCAGGTGGTGGTATTGCTCAG
AAGAAAGCAACCAGACATCATTCGACAGGAAGCACAAATAGTGAACGTCC
GAGAAAAGCTACAAGACAAACATCGACTTGCAGCACTGGGGATATTGGTA
CGTCAAGAAAGGCTTCAAGACAATGCTCCTTGGATCCAAGCGATATTTCA
AACTACAGCGAAGGAAGAAGATGCTCTTACCAAGGCCTCTCAGAGGAAAG
AATGTTGATTTCACCAATCATCAAAGAAGCCACCCCTTTCACCCAAGAAG
AATTTCATGTAAAAGAAGCAAATAATTCTCAAAGCAAAGTCGTCAAATTT
CTACATATCTTATTTCATCAAGACAATTGGAAGACAAGTCGATCCTCGGT
CACCAAGAAGCCCAAGATCTCAATCACCAGAGCTCCACATCCAGTCACCA
AAACCATCCGCCTGAAGATCCACATTCTGTACGCTATCTCGGTCGCTCTT
TTCGTTCTCTGGTTTCCTACCTATCTCTGGCTTTACCTCCACGCTTATAA
CTGGAAATTAGTTATTCACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028896-exon-sc0000714-1575043694:148974..149748 | TCONS_00028896-exon-sc0000714-1575043694:148974..149748 | Clytia hemisphaerica | exon |
| TCONS_00028896-exon-sc0000714-1575043694:148667..148904 | TCONS_00028896-exon-sc0000714-1575043694:148667..148904 | Clytia hemisphaerica | exon |
| TCONS_00028896-exon-sc0000714-1510915933:148974..149748 | TCONS_00028896-exon-sc0000714-1510915933:148974..149748 | Clytia hemisphaerica | exon |
| TCONS_00028896-exon-sc0000714-1510915933:148667..148904 | TCONS_00028896-exon-sc0000714-1510915933:148667..148904 | Clytia hemisphaerica | exon |
| TCONS_00028896-exon-sc0000714-1491911889:148974..149748 | TCONS_00028896-exon-sc0000714-1491911889:148974..149748 | Clytia hemisphaerica | exon |
| TCONS_00028896-exon-sc0000714-1491911889:148667..148904 | TCONS_00028896-exon-sc0000714-1491911889:148667..148904 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000714 | supercontig | sc0000714:148667..149748 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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