TCONS_00028887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028887
Unique NameTCONS_00028887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028887 ID=TCONS_00028887|Name=TCONS_00028887|organism=Clytia hemisphaerica|type=transcript|length=1678bp
TGCGGCTCCTCTTTCTTCATTTTCGGAACTCCATCAAATCGATCTACTGG
ACGTCAAACATATAAACGGCGAAACGGATGTAGGAGCGCCTCTTTCACCA
AGTACGCTTGCAAAACTTCGCGGCCCACGTGACGAAACCGTGAAAGATGA
TTCGGAAATGCACGATGATGTTGATGATACAAAGGATGTCGATCTAGGAG
CACCATTATCGCCCTCCACGCTTTCGAAAATACGTCTTCAAGGGAACGAT
AATGATGACGACGAAGCAGAAAAGAAGCCAACAGAACTAAAACACGAAGA
CAAAGTCTCCATATCTTCTGATCGAAAGTTTGACGAAGAATCTAACGAGG
TCTCTAACCAAGATGAAGAAATAAATCCTACTCACTCATATACTAGTGAA
CAGGGAAACGAAGAATCTGTCACTGAACAGGAGAAATCATTTCAGCTTga
aatactttcaaaacaaccaaaaacatccAGGGACACCGAAACAGAAACAT
CTAGGGACATCGAGACTGAAACATCTAGGGACACCGAAACAGAAACATCT
AGGGACATCGAGACTGAAACATCTAGGGACACCGAGACTGAAACATCTAG
GGACATCGAGACTGAAAAATCTAGGGACATCGAGACTGAAACACCTAGGG
ACATCGAGGCAGAAACACCTATGGACATCGAGACGGATTGTCAAGTAGAA
TCATCGAATGTTTTGACCACAGAAGAAGAGATGACTGATCCGAAGACTTT
GGATAGTAACGAAACTGGAAAGAATGCATCAACAGAATATACAGATGGTG
ACGTAATCGAAATGAAAGATGACGTAACTGTTAGtgagaaaaatgacgtc
atattgGAAAATGATAGAACAATTGAATCATCGGATAATGAGACGATGAA
TAAATCAATCGAAGAAGAAATAACCGAATCTGCGATGAACGAAGTTGAAA
TTATCGATTCTAAAAGTGAAGGTACGATGATTGATGACGTAATCGATCAT
TCGAAAAATGACGTAAATACTGTTGAACTGTGCGAAACGGTCGAAATGGA
AATACCTACCATTGATGACGTAATGACTGAATCAAAGGATGACGTAATTG
TAGACTCAGTAACCGATAAGAATAATGATATAATTATTGACTCAGAGGAA
AATGATATTAATCTTGaaaattctccaaaaatgaCGTATTGGTCGAGAAA
ACAACCTGAGAAAAAGCCTTGTCCTTTTTGTGGAAAGATGGTCAGAAATG
TAAGGCCTTCTTTGAACAGTGAGTTCTTAAAAACTTCTATTCGAATGCGA
GGGAAAATACGGCTACAATCACGCGACAAGGGTCAATTAAAAGCTCATAT
TTACGACGTGAAACACGAACTGATTCATAGCGAAGGACTTGCAATGACCC
GAAAATTAATCCATATTTTGAGATGCTTGAAATTGACTTTAAAGAAGTTG
GAGAAACCATAATAAACAATAAAGtaggaaatatttattttcttcccGAT
TGGTCCAGCTTCTTTACTAGatattttttattgtaatttatGAACCTTTT
TAGTTCAAATACTCGTTGACGACATGTAAGAAAGTACTTTTTGATATTTC
AGTTGTGCGGTAAACTAGAGTGGGCTACGAAACACAAAAAACTTCCATGT
GCGTAATAAACGGTGAGTCAAAATAAAC
Run BLAST on NCBI

transcript from alignment at sc0000714:87714..90011-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028887 ID=TCONS_00028887|Name=TCONS_00028887|organism=Clytia hemisphaerica|type=transcript|length=2298bp|location=Sequence derived from alignment at sc0000714:87714..90011- (Clytia hemisphaerica)
TGCGGCTCCTCTTTCTTCATTTTCGGAACTCCATCAAATCGATCTACTGG
ACGTCAAACATATAAACGGCGAAACGGATGTAGGAGGTATGAAGAAGTAT
AGAACTTCCTCTTGATACCTGCGCCTTTTCAGGATTTCGCCTTTTTTGCT
CCAANAGAAGTATAGAACTTCTTCTTGATACCTGCGCCTTTTCAGGATTT
CACCTTTTTTGTTCCAGCTGAAAAATAACCAATAAAGATTTTTGGTAATT
CCATTTATGCTTCCAGAGTATTTAAGGAGGTCGAAGTCAGGAAAGTGGTT
TGGTTCTAATGATACATGTGTTACATCATCTATCGCATTAACCTTAAGCT
CCTTCTCACTCGTTATAGCGCCTCTTTCACCAAGTACGCTTGCAAAACTT
CGCGGCCCACGTGACGAAACCGTGAAAGATGATTCGGAAATGCACGATGA
TGTTGATGATACAAAGGATGTCGATCTAGGAGGTAGGCGAACAACAATAT
AAAAAACAGTGTTTCATTAAGGAGAATTTCAACATTCAAATGGTTTTGTC
AAAACTGTAATTGTGTCATTATTTTGACCAATACTATCCTTCATCCGCCA
AATTAGATTCCTGGCAAAATTTGTTCCTTTAAGGTATCCCACAGGATCAA
TTTAAAAAAATGGTTTCTTTCTTTAGCACCATTATCGCCCTCCACGCTTT
CGAAAATACGTCTTCAAGGGAACGATAATGATGACGACGAAGCAGAAAAG
AAGCCAACAGAACTAAAACACGAAGACAAAGTCTCCATATCTTCTGATCG
AAAGTTTGACGAAGAATCTAACGAGGTCTCTAACCAAGATGAAGAAATAA
ATCCTACTCACTCATATACTAGTGAACAGGGAAACGAAGAATCTGTCACT
GAACAGGAGAAATCATTTCAGCTTGAAATACTTTCAAAACAACCAAAAAC
ATCCAGGGACACCGAAACAGAAACATCTAGGGACATCGAGACTGAAACAT
CTAGGGACACCGAAACAGAAACATCTAGGGACATCGAGACTGAAACATCT
AGGGACACCGAGACTGAAACATCTAGGGACATCGAGACTGAAAAATCTAG
GGACATCGAGACTGAAACACCTAGGGACATCGAGACAGAAACACCTAGGG
ACATCGAGACAGAAACACCTAGGGATATCGAGATAGAAACATCTAGGGAC
ACCGAGACTGAAACATCTAGGGACATCGAGACAGAAACACCTAGGGACAT
CGAGATAGAAACACCTAGGGACATCGAGGCAGAAACACCTATGGACATCG
AGACGGATTGTCAAGTAGAATCATCGAATGTTTTGACCACAGAAGAAGAG
ATGACTGATCCGAAGACTTTGGATAGTAACGAAACTGGAAAGAATGCATC
AACAGAATATACAGATGGTGACGTAATCGAAATGAAAGATGACGTAACTG
TTAGTGAGAAAAATGACGTCATATTGGAAAATGATAGAACAATTGAATCA
TCGGATAATGAGACGATGAATAAATCAATCGAAGAAGAAATAACCGAATC
TGCGATGAACGAAGTTGAAATTATCGATTCTAAAAGTGAAGGTACGATGA
TTGATGACGTAATCGATCATTCGAAAAATGACGTAAATACTGTTGAACTG
TGCGAAACGGTCGAAATGGAAATACCTACCATTGATGACGTAATGACTGA
ATCAAAGGATGACGTAATTGTAGACTCAGTAACCGATAAGAATAATGATA
TAATTATTGACTCAGAGGAAAATGATATTAATCTTGAAAATTCTCCAAAA
ATGACGTATTGGTCGAGAAAACAACCTGAGAAAAAGCCTTGTCCTTTTTG
TGGAAAGATGGTCAGAAATGTAAGGCCTTCTTTGAACAGTGAGTTCTTAA
AAACTTCTATTCGAATGCGAGGGAAAATACGGCTACAATCACGCGACAAG
GGTCAATTAAAAGCTCATATTTACGACGTGAAACACGAACTGATTCATAG
CGAAGGACTTGCAATGACCCGAAAATTAATCCATATTTTGAGATGCTTGA
AATTGACTTTAAAGAAGTTGGAGAAACCATAATAAACAATAAAGTAGGAA
ATATTTATTTTCTTCCCGATTGGTCCAGCTTCTTTACTAGATATTTTTTA
TTGTAATTTATGAACCTTTTTAGTTCAAATACTCGTTGACGACATGTAAG
AAAGTACTTTTTGATATTTCAGTTGTGCGGTAAACTAGAGTGGGCTACGA
AACACAAAAAACTTCCATGTGCGTAATAAACGGTGAGTCAAAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016401XLOC_016401Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028887-exon-sc0000714-1575043694:89926..90011TCONS_00028887-exon-sc0000714-1575043694:89926..90011Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1575043694:89530..89643TCONS_00028887-exon-sc0000714-1575043694:89530..89643Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1575043694:88884..89335TCONS_00028887-exon-sc0000714-1575043694:88884..89335Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1575043694:87714..88739TCONS_00028887-exon-sc0000714-1575043694:87714..88739Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1510915933:89926..90011TCONS_00028887-exon-sc0000714-1510915933:89926..90011Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1510915933:89530..89643TCONS_00028887-exon-sc0000714-1510915933:89530..89643Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1510915933:88884..89335TCONS_00028887-exon-sc0000714-1510915933:88884..89335Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1510915933:87714..88739TCONS_00028887-exon-sc0000714-1510915933:87714..88739Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1491911889:89926..90011TCONS_00028887-exon-sc0000714-1491911889:89926..90011Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1491911889:89530..89643TCONS_00028887-exon-sc0000714-1491911889:89530..89643Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1491911889:88884..89335TCONS_00028887-exon-sc0000714-1491911889:88884..89335Clytia hemisphaericaexon
TCONS_00028887-exon-sc0000714-1491911889:87714..88739TCONS_00028887-exon-sc0000714-1491911889:87714..88739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000714supercontigsc0000714:87714..90011 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.625199	0.338176	0	0	0.114726	0	0.00545884	0	0.159029	0	0.617801	0.504669	0.156188	0.258543	0.412647	0.202736	0.425309	0.121384	0.210557	0.116005	0.26409	0.266398	1.00677	0.637841	1.55131	2.16455	0.237771	0.829816	0.329112	0.233895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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