TCONS_00028886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028886
Unique NameTCONS_00028886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028886 ID=TCONS_00028886|Name=TCONS_00028886|organism=Clytia hemisphaerica|type=transcript|length=637bp
GGTTCGGTATAAATAGAGGAgggtttttcatttcaaatcatCACTTCAAC
TTCCAATCGAGTTTAAGAAGAtctcaacaaaaaacaaaaatgaagaccAT
CATCTTGATCGCCATCATCGCTGTTGCCAGCGCAAGTCACTTATACAGCC
catGTGCACATAGTTTGTGTGACCATAAAGAAAATGGAGCCATCTTTGGA
TTGAGCAAACACCAACCTGATGTTTTCGTCCAATGCAGCAATGGAAAACC
AGTTTGCCAACGATGCCCTGCTCACCATGAGTTTAACGAGAAATTCAATG
TTTGCATTCGACGTACTGTAAAGCCAGCATGTAAAGGTCATCACTGCAAA
CCACACCCACACAAACCACACAAGAAAGATGACTgccCAAAATCTTTATG
CGCTGATTACCCACACAGTGACTACGTTGTCTTCCGATACCCACACAAAC
CAACTTATTACGTTCAATGTGTTGCTGGAAAACCATTCTGCAGAAAATGT
CCACATGGATTGATCTTTGACAACAAAGTTAAAGTCTGCGTTTTCCCACC
AAAGaaacattaatttttttgtaattttttaaccaaCTGTAATTTGTCTT
TTTTAAccgaaaaatatttaaatcctCATTTGAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00028886-protein

>TCONS_00028886-protein ID=TCONS_00028886-protein|Name=TCONS_00028886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
FGINRGGFFISNHHFNFQSSLRRSQQKTKMKTIILIAIIAVASASHLYSP
CAHSLCDHKENGAIFGLSKHQPDVFVQCSNGKPVCQRCPAHHEFNEKFNV
CIRRTVKPACKGHHCKPHPHKPHKKDDCPKSLCADYPHSDYVVFRYPHKP
TYYVQCVAGKPFCRKCPHGLIFDNKVKVCVFPPKKH
Run BLAST on NCBI

transcript from alignment at sc0000714:78085..79662-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028886 ID=TCONS_00028886|Name=TCONS_00028886|organism=Clytia hemisphaerica|type=transcript|length=1578bp|location=Sequence derived from alignment at sc0000714:78085..79662- (Clytia hemisphaerica)
GGTTCGGTATAAATAGAGGAGGGTTTTTCATTTCAAATCATCACTTCAAC
TTCCAATCGAGTTTAAGAAGATCTCAACAAAAAACAAAAATGAAGACCAT
CATCTTGATCGCCATCATCGCTGGTAAGTTTATTTGTTTGATTTTGAGCT
TTTTGCGAAAAAAAATGACCCTGAATGGGACTGAAATTCCAAAATGTCCT
CAAATTTTCTACTTTCTCCCAAAATTTTCCAAAAAGGGCACCATACAAGG
TACTGATTTTTTTATTTTGGTGTTTTTGTGACACTACCTGGGACTCGTGG
AGGTTAAAAAAGGTACCCTGGCCAGCGGTGTATCCACGTAACCCATTTTG
TCCTAGTACCCCCCCCCCGGGGCCCGGGGGGGTTAAAAAAGGGCCCCCGG
GCCCGGGGTGTTTCCCCGTACCCCTTTTTTCCCGTTCCCCCCCCCCCCCC
GGGGTGTTACAGCTCTTTGTTAGAAACCAGAGTATAACAATTTTAGTTTA
CTGGTGCGATTAATTTTCGACTTTAATCTGATATTTTTGTGGATTCTAGG
GTGGTCTTTCCTCAAATTTTGCCGAAGATTGTTATATTTTTATATTTTCA
CTTTAATGGAATTTACGTTCATTCCATTTTAGTTGCCAGCGCAAGTCACT
TATACAGCCCATGTAAGTATTTTTTTTAAGTATCTAAATTCTAAATTCAT
TTTTAAATTTGTTTGAAAAGGCAAGACATTCAGATTTTAGACTCCGATTC
TTGTTCATAACCTAAATATATATGCTAATTTTATTAACTTTATTAATTTC
TAACTCTTGTTTTAGGTGCACATAGTTTGTGTGACCATAAAGAAAATGGA
GCCATCTTTGGATTGAGCAAACACCAACCTGATGTTTTCGTCCAATGCAG
CAATGGAAAACCAGTTTGCCAACGATGCCCTGCTCACCATGAGTTTAACG
AGAAATTCAATGTTTGCATTCGACGTACTGTAAAGCCAGCATGTAAAGGT
CATCACTGCAAACCACACCCACACAAACCACACAAGAAAGATGACTGTAA
GAAGCGTTGAATTTCCTAGGAACCGAAATTTTTTCTTAAAAAGTTCAAAC
AGCTAAAATCAGACCATTAAAAGGTCAAAACTTGCCAGTGATAATACAGA
AAAAGTTGCTGACATCTTTGCTTGCTTTGTTAGGGAAAACTTTAACCTTT
TTTGTCCGCAATGACTCTCCCGGATAATACTGGCTAGATGCTCTAGCAGT
TTTTATTACGATCAGCTAGTCTTTTTGCAAGATAGCTTTCACTAAAGAAA
ATTATATCTATTTTTTTTATTTCAGGCCCAAAATCTTTATGCGCTGATTA
CCCACACAGTGACTACGTTGTCTTCCGATACCCACACAAACCAACTTATT
ACGTTCAATGTGTTGCTGGAAAACCATTCTGCAGAAAATGTCCACATGGA
TTGATCTTTGACAACAAAGTTAAAGTCTGCGTTTTCCCACCAAAGAAACA
TTAATTTTTTTGTAATTTTTTAACCAACTGTAATTTGTCTTTTTTAACCG
AAAAATATTTAAATCCTCATTTGAAAAT

Coding sequence (CDS) from alignment at sc0000714:78085..79662-

>TCONS_00028886 ID=TCONS_00028886|Name=TCONS_00028886|organism=Clytia hemisphaerica|type=CDS|length=2244bp|location=Sequence derived from alignment at sc0000714:78085..79662- (Clytia hemisphaerica)
GCCCAAAATCTTTATGCGCTGATTACCCACACAGTGACTACGTTGTCTTC
CGATACCCACACAAACCAACTTATTACGTTCAATGTGTTGCTGGAAAACC
ATTCTGCAGAAAATGTCCACATGGATTGATCTTTGACAACAAAGTTAAAG
TCTGCGTTTTCCCACCAAAGAAACATTAAGTGCACATAGTTTGTGTGACC
ATAAAGAAAATGGAGCCATCTTTGGATTGAGCAAACACCAACCTGATGTT
TTCGTCCAATGCAGCAATGGAAAACCAGTTTGCCAACGATGCCCTGCTCA
CCATGAGTTTAACGAGAAATTCAATGTTTGCATTCGACGTACTGTAAAGC
CAGCATGTAAAGGTCATCACTGCAAACCACACCCACACAAACCACACAAG
AAAGATGACTTTGCCAGCGCAAGTCACTTATACAGCCCATTTCGGTATAA
ATAGAGGAGGGTTTTTCATTTCAAATCATCACTTCAACTTCCAATCGAGT
TTAAGAAGATCTCAACAAAAAACAAAAATGAAGACCATCATCTTGATCGC
CATCATCGCTGGCCCAAAATCTTTATGCGCTGATTACCCACACAGTGACT
ACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGTTCAATGTGTT
GCTGGAAAACCATTCTGCAGAAAATGTCCACATGGATTGATCTTTGACAA
CAAAGTTAAAGTCTGCGTTTTCCCACCAAAGAAACATTAAGTGCACATAG
TTTGTGTGACCATAAAGAAAATGGAGCCATCTTTGGATTGAGCAAACACC
AACCTGATGTTTTCGTCCAATGCAGCAATGGAAAACCAGTTTGCCAACGA
TGCCCTGCTCACCATGAGTTTAACGAGAAATTCAATGTTTGCATTCGACG
TACTGTAAAGCCAGCATGTAAAGGTCATCACTGCAAACCACACCCACACA
AACCACACAAGAAAGATGACTTTGCCAGCGCAAGTCACTTATACAGCCCA
TTTCGGTATAAATAGAGGAGGGTTTTTCATTTCAAATCATCACTTCAACT
TCCAATCGAGTTTAAGAAGATCTCAACAAAAAACAAAAATGAAGACCATC
ATCTTGATCGCCATCATCGCTGGCCCAAAATCTTTATGCGCTGATTACCC
ACACAGTGACTACGTTGTCTTCCGATACCCACACAAACCAACTTATTACG
TTCAATGTGTTGCTGGAAAACCATTCTGCAGAAAATGTCCACATGGATTG
ATCTTTGACAACAAAGTTAAAGTCTGCGTTTTCCCACCAAAGAAACATTA
AGTGCACATAGTTTGTGTGACCATAAAGAAAATGGAGCCATCTTTGGATT
GAGCAAACACCAACCTGATGTTTTCGTCCAATGCAGCAATGGAAAACCAG
TTTGCCAACGATGCCCTGCTCACCATGAGTTTAACGAGAAATTCAATGTT
TGCATTCGACGTACTGTAAAGCCAGCATGTAAAGGTCATCACTGCAAACC
ACACCCACACAAACCACACAAGAAAGATGACTTTGCCAGCGCAAGTCACT
TATACAGCCCATTTCGGTATAAATAGAGGAGGGTTTTTCATTTCAAATCA
TCACTTCAACTTCCAATCGAGTTTAAGAAGATCTCAACAAAAAACAAAAA
TGAAGACCATCATCTTGATCGCCATCATCGCTGGCCCAAAATCTTTATGC
GCTGATTACCCACACAGTGACTACGTTGTCTTCCGATACCCACACAAACC
AACTTATTACGTTCAATGTGTTGCTGGAAAACCATTCTGCAGAAAATGTC
CACATGGATTGATCTTTGACAACAAAGTTAAAGTCTGCGTTTTCCCACCA
AAGAAACATTAAGTGCACATAGTTTGTGTGACCATAAAGAAAATGGAGCC
ATCTTTGGATTGAGCAAACACCAACCTGATGTTTTCGTCCAATGCAGCAA
TGGAAAACCAGTTTGCCAACGATGCCCTGCTCACCATGAGTTTAACGAGA
AATTCAATGTTTGCATTCGACGTACTGTAAAGCCAGCATGTAAAGGTCAT
CACTGCAAACCACACCCACACAAACCACACAAGAAAGATGACTTTGCCAG
CGCAAGTCACTTATACAGCCCATTTCGGTATAAATAGAGGAGGGTTTTTC
ATTTCAAATCATCACTTCAACTTCCAATCGAGTTTAAGAAGATCTCAACA
AAAAACAAAAATGAAGACCATCATCTTGATCGCCATCATCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016400XLOC_016400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028886-exon-sc0000714-1575043694:79540..79662TCONS_00028886-exon-sc0000714-1575043694:79540..79662Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1575043694:79001..79030TCONS_00028886-exon-sc0000714-1575043694:79001..79030Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1575043694:78617..78847TCONS_00028886-exon-sc0000714-1575043694:78617..78847Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1575043694:78085..78337TCONS_00028886-exon-sc0000714-1575043694:78085..78337Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1510915933:79540..79662TCONS_00028886-exon-sc0000714-1510915933:79540..79662Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1510915933:79001..79030TCONS_00028886-exon-sc0000714-1510915933:79001..79030Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1510915933:78617..78847TCONS_00028886-exon-sc0000714-1510915933:78617..78847Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1510915933:78085..78337TCONS_00028886-exon-sc0000714-1510915933:78085..78337Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1491911889:79540..79662TCONS_00028886-exon-sc0000714-1491911889:79540..79662Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1491911889:79001..79030TCONS_00028886-exon-sc0000714-1491911889:79001..79030Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1491911889:78617..78847TCONS_00028886-exon-sc0000714-1491911889:78617..78847Clytia hemisphaericaexon
TCONS_00028886-exon-sc0000714-1491911889:78085..78337TCONS_00028886-exon-sc0000714-1491911889:78085..78337Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028886-proteinTCONS_00028886-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000714supercontigsc0000714:78085..79662 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134023	0.359169	0.21038	0	0	0.0883335	0	0	0.24235	0.489091	0.257598	0.242847	10.4001	129.034	2.71969	0.232046	10.972	0.820531	0.277428	0	0	0	0.190084	0.259222	0.251253	0.152353	1.16089	0.369472	0.364217	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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