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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028885 ID=TCONS_00028885|Name=TCONS_00028885|organism=Clytia hemisphaerica|type=transcript|length=2414bp
GAACCATCAAACACGAACACGGCTTATTTATTGTTTACACGCACAATCTT
TCGCTCCAATAAATTTGTTTAACGagaaaaaaattggattttaatttgat
ttattttcctttcatatattcaaaatcaaaagttgTGGCGAGAGTAGAAA
GCAGCACCAATTTTCATCGCCATTCAAAAGAAATGTTGGGTAACGAAGCA
GCAACTCGCATGTTAACAACAGCACGACAACCGAATCCAATTGGTAACCC
TGGCAACCCGACAACAGATGATTTCAATCTTATACAgcaacaaatgaaac
aaatgcaACAGGTCGCTCAACAACAGCAAGCTGCCCCTCCGCCACAACTC
GATATGAATCGAAACTCCCTACCCCCTTTCGATCGACAATTATACGAAAA
CTTCGGCAAATTTTGTCAGCCGGATAATACGATAAAAGCAACATATAACA
TCAGGAATAACATGAGAAATCATATGAACAATTACATGCCTTACCCAACG
CTACCATTTCAAGGTTTGTACTATCGACAGTTAGCTCCCTTAGATTTCGG
TCCAACACCAACGCAGAATTTCTTACAGACACCACAGCAGGCTAATCAAC
GAGTTGCAGGCGGAATGGCGGGTACGGGCGCCTGGCCTTTTGATCAGATG
AATGATTTTTGTTCAGAGTTATTGAATCGTGATAAACATTATTGGACAGA
CGAAGAAACGACCCTTATGTTGGAGCTTTATGAAGAAAATAGGAATTATT
TTAACGACACCAAGACAAAGAAAACCAAAGTGTGGAGCGTCATAGCCAAC
ATCATCAACAAACGCTTCAATACCAGTGTCAATTCTGAACAATGCAGTCA
AAAATATCGTAATTTGAAAGCAGAATTTTTGAAAGTGGTGGACCCAAATA
CTTCCGATGGAGGTGCGAAGAAGTTTGGTCGGCACTTTATACAAATGAAA
CGATTGATTGAGCACGAAGAACGAAAGGGTGGTAAAGTTGTGTACACGTC
ACCACAAAACGCCGCACCGGCTGTCAACATGAAATCAGGAGCAAATGACA
CAAACACTTCAAATTTCGCTACACTGACAAACGTCAATCAAACTAAATTT
AAAGTTGAATCAAGATCATCAGATTTCGGTCCGAACAAAATGGCGGACAC
TGCACCCTTACAATCGCAAGACTTTGGAAATCTAAACGCTGCTATTTTTA
CGTTGGAAGATACAAAACCAACAATACAAGACATTCAGAGTAATAATACG
GAACAGCCGTCGAAAATAAAAAACCCAAATATCTATTCGGACGAATTGAA
GATGGTTTTCGAAGAGTTCTTTAAGAACAAGAGTAGAGAATGTGAGAAGG
TGGATAGCAACACCAAGATGGTTTGTTTAGGAAAATGTTTGACTATATTC
AAGAAAATTATCGACGACGGGAACTTTGTGTAAATTATTTGTGAGAATAA
GAAAGAGGCTTTTCATGGCGTGAGAATGTGTTTTCCCacctgtacataag
atttccAAGATTATTCTCGAGCGGGCTATGTACAGATGGGCACACACATT
CTCACGTCGTAAATAGTCTCTTGTTCACTGTTGTATAAtaagaaatataa
aaatttaaaggaCATTATTTAACTtatcatttgcttacacagcatctttt
tacaaaagaaaaacaactttctACCCGCGCaagcacaaattttgagaaat
tcttttgtttattgtGCTTTGTCAGCAGAGTTTTCATCACAAAAGAACTG
TCTTTAAAACTGCTTCACAAATActtccaaaaataaaaaggcTGTCAAAA
ATCATACTAAGTTCCCTGAGATAATTATAAGCAAGAGAGAAGAATAATGT
GAATAAGAATAACGTATaccgtaatttctctaatttaatacgaccaaaaa
aataattattttggaggTGTCGCACTAATAATAGGAGGATATAAATTGCT
CNctgttttttgtttctttcttttttaagcttttttctaacccatatttt
cttctcttttcaaACTCTTCCAACTTTTCACGTGTCATCTGCCTCATTTG
GGCGAAAAGATCAGCGTTCTCAGTCTTAAAAATAAAGCTTGCGGGAATTT
CCATTCCTCCTTTAGGCAGGTCATGAGAGTATCTCCTTTCTCCTGTAATT
TTCACCGACAATCCTCCTCCattcttgatgaaaaaatatgttaattttga
caaaaatttgggaaCGTGTCCAACCGTTTGACCATCACTACAGATAGCAA
ATAGCAAATATCAGTTCGTActataattagaggaaaatttgaactttacc
gtattaaattagaggaaaatcaaAAGTAGGTAAATGGGTGCTCGCACTAA
TAATTAGCGGATTTAAATTAGttcaaaatgacgaaaataattTCCTCGCA
TTAATTAGAGGAcg Run BLAST on NCBI protein sequence of TCONS_00028885-protein >TCONS_00028885-protein ID=TCONS_00028885-protein|Name=TCONS_00028885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp
MLGNEAATRMLTTARQPNPIGNPGNPTTDDFNLIQQQMKQMQQVAQQQQA
APPPQLDMNRNSLPPFDRQLYENFGKFCQPDNTIKATYNIRNNMRNHMNN
YMPYPTLPFQGLYYRQLAPLDFGPTPTQNFLQTPQQANQRVAGGMAGTGA
WPFDQMNDFCSELLNRDKHYWTDEETTLMLELYEENRNYFNDTKTKKTKV
WSVIANIINKRFNTSVNSEQCSQKYRNLKAEFLKVVDPNTSDGGAKKFGR
HFIQMKRLIEHEERKGGKVVYTSPQNAAPAVNMKSGANDTNTSNFATLTN
VNQTKFKVESRSSDFGPNKMADTAPLQSQDFGNLNAAIFTLEDTKPTIQD
IQSNNTEQPSKIKNPNIYSDELKMVFEEFFKNKSRECEKVDSNTKMVCLG
KCLTIFKKIIDDGNFV Run BLAST on NCBI transcript from alignment at sc0000714:73479..76916- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028885 ID=TCONS_00028885|Name=TCONS_00028885|organism=Clytia hemisphaerica|type=transcript|length=3438bp|location=Sequence derived from alignment at sc0000714:73479..76916- (Clytia hemisphaerica)
GAACCATCAAACACGAACACGGCTTATTTATTGTTTACACGCACAATCTT
TCGCTCCAATAAATTTGTTTAACGAGAAAAAAATTGGATTTTAATTTGAT
TTATTTTCCTTTCATATATTCAAAATCAAAAGTTGTGGCGAGAGTAGAAA
GCAGCACCAATTTTCATCGCCATTCAAAAGGTATGTCACAGATTATTTCA
ATCATTTTTTCACTGATTTCAAGTACGATTTAGTGCAAAGGCTTTCAAAA
GCACTGACCTTTGGCTGGACCAAGTTACTTAATGCCGGCCAAGCAAAATA
TTATGATCGGAGTTTTTTTTAAATTGGTATCCGCAGAGAGAGCGCTACAC
TAGTGATGTAGCGCCGTTTGTCGTTAGGCAAAGTTTCAAACACTACAATG
GCTTCTTTGCGGGTACCAACCAATGAAGTATAAGCCCGAAGGGCTAGAAG
TCAATCTCCTTGGTAGGATTTGAGGCCAACAAATCCTACCAAAGTTGCGC
GGCCTAGCGGCTCGCCTGGTTTTTACATAAATTTACCGCAAAATTTCGAA
AAAAATATCAATCGTGAAACAAAGGAATTGCTAGATTCAATCTGTCGTCA
AAAATGTGGCTTCACTTTTTCTTGCCTGAGAAAGGTTAGAGATTGAACTC
TAGCCCTTTGGGCTTTAAACTCAATGGTACCAACTTCAAAAAAAACTTCA
ATCAAAGACGACGGATATAGCTTGGTCCAGGGATATATAAAGGTTCACAA
AGGTTCACAAGGAAGAATTTATGACACTCATAACCCTAGAATGTTTTCTC
ATCAAGTTTTTATGTGTAGCTGCCAGTACGAACGTTGTCCGCTATGGTTG
GACAATGGAGACAAAGTTTCATATATAAGGGGTCTTAAAATACTATTTCA
AGGACTTTTCTGGTGGGCAAGCCAGTGTCGCGGGATATTCGCAGAGATAT
TTAAAACTTTGAGTTGTGATGAATGAGGTCCTGAGTAGAAAGAAACTTTG
AAACCATCGTAATGAAGAATTTCAGAGACCTTTTCGCTATTCCTGAGCAC
TTAATTGGAAAACTGTTTAGGTGAAATGGTTCTGCACGTGTTGAGTTTAA
ATGTGGAAAATTCACGTATTACTACATCTGATAACAAGTAGGGAACACTT
CTTTGCTTTTCGATATTCAAATCACCGATGCTTTATTTTTCCCTTTGTTT
TTAGAAATGTTGGGTAACGAAGCAGCAACTCGCATGTTAACAACAGCACG
ACAACCGAATCCAATTGGTAACCCTGGCAACCCGACAACAGATGATTTCA
ATCTTATACAGCAACAAATGAAACAAATGCAACAGGTCGCTCAACAACAG
CAAGCTGCCCCTCCGCCACAACTCGATATGAATCGAAACTCCCTACCCCC
TTTCGATCGACAATTATACGAAAACTTCGGCAAATTTTGTCAGCCGGATA
ATACGATAAAAGCAACATATAACATCAGGAATAACATGAGAAATCATATG
AACAATTACATGCCTTACCCAACGCTACCATTTCAAGGTTTGTACTATCG
ACAGTTAGCTCCCTTAGATTTCGGTCCAACACCAACGCAGAATTTCTTAC
AGACACCACAGCAGGCTAATCAACGAGTTGCAGGCGGAATGGCGGGTACG
GGCGCCTGGCCTTTTGATCAGATGAATGATTTTTGTTCAGAGTTATTGAA
TCGTGATAAACATTATTGGACAGACGAAGAAACGACCCTTATGTTGGAGC
TTTATGAAGAAAATAGGAATTATTTTAACGACACCAAGACAAAGAAAACC
AAAGTGTGGAGCGTCATAGCCAACATCATCAACAAACGCTTCAATACCAG
TGTCAATTCTGAACAATGCAGTCAAAAATATCGTAATTTGAAAGCAGAAT
TTTTGAAAGTGGTGGACCCAAATACTTCCGATGGAGGTGCGAAGAAGTTT
GGTCGGCACTTTATACAAATGAAACGATTGATTGAGCACGAAGAACGAAA
GGGTGGTAAAGTTGTGTACACGTCACCACAAAACGCCGCACCGGCTGTCA
ACATGAAATCAGGAGCAAATGACACAAACACTTCAAATTTCGCTACACTG
ACAAACGTCAATCAAACTAAATTTAAAGTTGAATCAAGATCATCAGATTT
CGGTCCGAACAAAATGGCGGACACTGCACCCTTACAATCGCAAGACTTTG
GAAATCTAAACGCTGCTATTTTTACGTTGGAAGATACAAAACCAACAATA
CAAGACATTCAGAGTAATAATACGGAACAGCCGTCGAAAATAAAAAACCC
AAATATCTATTCGGACGAATTGAAGATGGTTTTCGAAGAGTTCTTTAAGA
ACAAGAGTAGAGAATGTGAGAAGGTGGATAGCAACACCAAGATGGTTTGT
TTAGGAAAATGTTTGACTATATTCAAGAAAATTATCGACGACGGGAACTT
TGTGTAAATTATTTGTGAGAATAAGAAAGAGGCTTTTCATGGCGTGAGAA
TGTGTTTTCCCACCTGTACATAAGATTTCCAAGATTATTCTCGAGCGGGC
TATGTACAGATGGGCACACACATTCTCACGTCGTAAATAGTCTCTTGTTC
ACTGTTGTATAATAAGAAATATAAAAATTTAAAGGACATTATTTAACTTA
TCATTTGCTTACACAGCATCTTTTTACAAAAGAAAAACAACTTTCTACCC
GCGCAAGCACAAATTTTGAGAAATTCTTTTGTTTATTGTGCTTTGTCAGC
AGAGTTTTCATCACAAAAGAACTGTCTTTAAAACTGCTTCACAAATACTT
CCAAAAATAAAAAGGCTGTCAAAAATCATACTAAGTTCCCTGAGATAATT
ATAAGCAAGAGAGAAGAATAATGTGAATAAGAATAACGTATACCGTAATT
TCTCTAATTTAATACGACCAAAAAAATAATTATTTTGGAGGTGTCGCACT
AATAATAGGAGGATATAAATTGCTCNCTGTTTTTTGTTTCTTTCTTTTTT
AAGCTTTTTTCTAACCCATATTTTCTTCTCTTTTCAAACTCTTCCAACTT
TTCACGTGTCATCTGCCTCATTTGGGCGAAAAGATCAGCGTTCTCAGTCT
TAAAAATAAAGCTTGCGGGAATTTCCATTCCTCCTTTAGGCAGGTCATGA
GAGTATCTCCTTTCTCCTGTAATTTTCACCGACAATCCTCCTCCATTCTT
GATGAAAAAATATGTTAATTTTGACAAAAATTTGGGAACGTGTCCAACCG
TTTGACCATCACTACAGATAGCAAATAGCAAATATCAGTTCGTACTATAA
TTAGAGGAAAATTTGAACTTTACCGTATTAAATTAGAGGAAAATCAAAAG
TAGGTAAATGGGTGCTCGCACTAATAATTAGCGGATTTAAATTAGTTCAA
AATGACGAAAATAATTTCCTCGCATTAATTAGAGGACG Coding sequence (CDS) from alignment at sc0000714:73479..76916- >TCONS_00028885 ID=TCONS_00028885|Name=TCONS_00028885|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at sc0000714:73479..76916- (Clytia hemisphaerica)
ATGTTGGGTAACGAAGCAGCAACTCGCATGTTAACAACAGCACGACAACC
GAATCCAATTGGTAACCCTGGCAACCCGACAACAGATGATTTCAATCTTA
TACAGCAACAAATGAAACAAATGCAACAGGTCGCTCAACAACAGCAAGCT
GCCCCTCCGCCACAACTCGATATGAATCGAAACTCCCTACCCCCTTTCGA
TCGACAATTATACGAAAACTTCGGCAAATTTTGTCAGCCGGATAATACGA
TAAAAGCAACATATAACATCAGGAATAACATGAGAAATCATATGAACAAT
TACATGCCTTACCCAACGCTACCATTTCAAGGTTTGTACTATCGACAGTT
AGCTCCCTTAGATTTCGGTCCAACACCAACGCAGAATTTCTTACAGACAC
CACAGCAGGCTAATCAACGAGTTGCAGGCGGAATGGCGGGTACGGGCGCC
TGGCCTTTTGATCAGATGAATGATTTTTGTTCAGAGTTATTGAATCGTGA
TAAACATTATTGGACAGACGAAGAAACGACCCTTATGTTGGAGCTTTATG
AAGAAAATAGGAATTATTTTAACGACACCAAGACAAAGAAAACCAAAGTG
TGGAGCGTCATAGCCAACATCATCAACAAACGCTTCAATACCAGTGTCAA
TTCTGAACAATGCAGTCAAAAATATCGTAATTTGAAAGCAGAATTTTTGA
AAGTGGTGGACCCAAATACTTCCGATGGAGGTGCGAAGAAGTTTGGTCGG
CACTTTATACAAATGAAACGATTGATTGAGCACGAAGAACGAAAGGGTGG
TAAAGTTGTGTACACGTCACCACAAAACGCCGCACCGGCTGTCAACATGA
AATCAGGAGCAAATGACACAAACACTTCAAATTTCGCTACACTGACAAAC
GTCAATCAAACTAAATTTAAAGTTGAATCAAGATCATCAGATTTCGGTCC
GAACAAAATGGCGGACACTGCACCCTTACAATCGCAAGACTTTGGAAATC
TAAACGCTGCTATTTTTACGTTGGAAGATACAAAACCAACAATACAAGAC
ATTCAGAGTAATAATACGGAACAGCCGTCGAAAATAAAAAACCCAAATAT
CTATTCGGACGAATTGAAGATGGTTTTCGAAGAGTTCTTTAAGAACAAGA
GTAGAGAATGTGAGAAGGTGGATAGCAACACCAAGATGGTTTGTTTAGGA
AAATGTTTGACTATATTCAAGAAAATTATCGACGACGGGAACTTTGTGTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028885-exon-sc0000714-1575043694:76737..76916 | TCONS_00028885-exon-sc0000714-1575043694:76737..76916 | Clytia hemisphaerica | exon |
| TCONS_00028885-exon-sc0000714-1575043694:73479..75712 | TCONS_00028885-exon-sc0000714-1575043694:73479..75712 | Clytia hemisphaerica | exon |
| TCONS_00028885-exon-sc0000714-1510915933:76737..76916 | TCONS_00028885-exon-sc0000714-1510915933:76737..76916 | Clytia hemisphaerica | exon |
| TCONS_00028885-exon-sc0000714-1510915933:73479..75712 | TCONS_00028885-exon-sc0000714-1510915933:73479..75712 | Clytia hemisphaerica | exon |
| TCONS_00028885-exon-sc0000714-1491911889:76737..76916 | TCONS_00028885-exon-sc0000714-1491911889:76737..76916 | Clytia hemisphaerica | exon |
| TCONS_00028885-exon-sc0000714-1491911889:73479..75712 | TCONS_00028885-exon-sc0000714-1491911889:73479..75712 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000714 | supercontig | sc0000714:73479..76916 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR017877 | Myb-like_dom |
Blast
The following BLAST results are available for this feature:
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