TCONS_00028868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028868
Unique NameTCONS_00028868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028868 ID=TCONS_00028868|Name=TCONS_00028868|organism=Clytia hemisphaerica|type=transcript|length=407bp
ttttttttggctgcGATgacttaaagcacgacatctagcccttctggCTT
CTGTGGTTTCACTGCTCGCAAGATGAGCCGCAAACTTACGAAGTAAGGAA
ACTGTCGCTGATGAGAAAGCGAATGAGAAATGAGACTCTAGTTTCGAGTG
AACCTCGTGGATAAAATTTTCGCAAATCTTTCAAGATTTACAAGTTTTGT
TTGCAAAATGTCAAAATCTAACAAATTAATACATGACCTCGGAGTCAGTC
AGCCAACACGAGCTCACCAGACTCCAAAATTGctaattatgttttttttt
atatggtTGTTAATATGTAGGGACATGAAGTCGCCACAAGATGCCGACTT
TACGCCGAGTTACAGCGTTTTTAACAATTTTCGGagattttaaatcttta
aatcttt
Run BLAST on NCBI

transcript from alignment at sc0000708:136673..137079

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028868 ID=TCONS_00028868|Name=TCONS_00028868|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at sc0000708:136673..137079 (Clytia hemisphaerica)
aaagatttaaagatttaaaatctCCGAAAATTGTTAAAAACGCTGTAACT
CGGCGTAAAGTCGGCATCTTGTGGCGACTTCATGTCCCTACATATTAACA
accatataaaaaaaaacataattagCAATTTTGGAGTCTGGTGAGCTCGT
GTTGGCTGACTGACTCCGAGGTCATGTATTAATTTGTTAGATTTTGACAT
TTTGCAAACAAAACTTGTAAATCTTGAAAGATTTGCGAAAATTTTATCCA
CGAGGTTCACTCGAAACTAGAGTCTCATTTCTCATTCGCTTTCTCATCAG
CGACAGTTTCCTTACTTCGTAAGTTTGCGGCTCATCTTGCGAGCAGTGAA
ACCACAGAAGccagaagggctagatgtcgtgctttaagtcATCgcagcca
aaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016386XLOC_016386Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028868-exon-sc0000708-1491911889:136673..137079TCONS_00028868-exon-sc0000708-1491911889:136673..137079Clytia hemisphaericaexon
TCONS_00028868-exon-sc0000708-1510915933:136673..137079TCONS_00028868-exon-sc0000708-1510915933:136673..137079Clytia hemisphaericaexon
TCONS_00028868-exon-sc0000708-1575043694:136673..137079TCONS_00028868-exon-sc0000708-1575043694:136673..137079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000708supercontigsc0000708:136673..137079 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.202877	0	0	0	0	0	0.301984	0	0	0	2.02584	0.866295	0.305234	0	0	0.275737	0.571419	1.99316	0.346484	0.507008	0.41089	0.186779	0.769513	0.686772	0.245692	0.262209	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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