|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028863 ID=TCONS_00028863|Name=TCONS_00028863|organism=Clytia hemisphaerica|type=transcript|length=1423bp
CAATATTTGAATTTTGTAAATTCAATAGGTGTCTGTATACTATTCAAGGA
AAATTAATGCCGATAAATTATTAAAAAATCAAAAATGATAGATTTTTATC
CTTTCATTTTGTCTTTAAATTCACAACTTTTTCTAACTATGAACTATTCT
CGTTTTAGAAACATACTAACACAGTACAACCGACAAAATTTGTCAACAAA
GAAGCTTATAAAAGTTAAAACAGTAAATCTAGCTCATTTACAATCAGTAA
AATACTCTTCGACGAAAATGTCGCCGAAAAAGATTGCATTTATCATGACC
GAAGATGGTGAAAAATGGAAGGGTGAAGCAGGGATTggaaaatatttctt
acaaCGATTCCAACAAGTTGATGATAGTTTTGAATATGAAGTCATTCACG
GTGTAACTGGGTCCTTACCAAAAATAAGTCAGCTTCCAAACTACATCGGA
TTTGTGATCAGCGGTTCACATCATAGTGTAAACGATCCTTATCAATGGAT
CATGAATTTACAAAACTTTATCATTCAACTCGATCAATACAACAAAGAGA
ACAGAAATAAGCCTGTCCGACTTTTCGGAATTTGTTACGGACATCAACTG
ATTGCAAAGACATTTGGTGGAGTTGTCCAACCCATCGGAGACGGTAAATT
TATATACGGTGCTGAGAAAGTGAATTTTACCAACAAGTTAAGCGATGAAG
TATGGTTTAAGCAAGCTTTGCAATATCATTCAAGTAACATAATGGTAGCA
CAATCACATGGTGAAGAAGTTTACACAGTTCCTAAGAATGCAATCACAGT
TGCCTCTTCGACAACTTGCAAGGCCGAAGCGTTACTATATGATGATCATA
TTCTATCTTTCCAAGGCCATCCAGAGCTGGAAAATGAAACATTAGGCCGC
ATtattggtgggaatttaatcCGTAAAAAGATTATTGATCGACAGGCTTT
GGAACGTGGAAATGGGAATGCTAGAATGGTTCCTGCTGATACGTTAACCG
GTATGGTGTTAGCTTTCTTAAACCATTAAATTGAACACATTAGAATAAAT
TCTTTGCACTGTTTTGGAAAgctcgtacccagagccacttgcgccacgtt
ttgattttactgatgaatGTGATATAATCGTGAGCTTATCTGAATAATGA
AAAGAGAGCTAAGGAACTGGGTTCgactttgttgttgttgacaaACTCAT
AGCAGGATTTTCATACTTAGGCAACATAATTTTTGCCTTCCCTAACTTTT
TGGTCAAGAAACGAAGTTAATGAGCTGTGTTCTAGAATTCTGGAAATAAT
TTgttctttctcatttttttcttaacccttagaagccagaatacgtatat
atacgttttgaaaaggccattttaccgatacacagtcttttggtcataac
tcctgaccacttgagattcagaN Run BLAST on NCBI protein sequence of TCONS_00028863-protein >TCONS_00028863-protein ID=TCONS_00028863-protein|Name=TCONS_00028863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MIDFYPFILSLNSQLFLTMNYSRFRNILTQYNRQNLSTKKLIKVKTVNLA
HLQSVKYSSTKMSPKKIAFIMTEDGEKWKGEAGIGKYFLQRFQQVDDSFE
YEVIHGVTGSLPKISQLPNYIGFVISGSHHSVNDPYQWIMNLQNFIIQLD
QYNKENRNKPVRLFGICYGHQLIAKTFGGVVQPIGDGKFIYGAEKVNFTN
KLSDEVWFKQALQYHSSNIMVAQSHGEEVYTVPKNAITVASSTTCKAEAL
LYDDHILSFQGHPELENETLGRIIGGNLIRKKIIDRQALERGNGNARMVP
ADTLTGMVLAFLNH Run BLAST on NCBI transcript from alignment at sc0000708:74322..75744 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028863 ID=TCONS_00028863|Name=TCONS_00028863|organism=Clytia hemisphaerica|type=transcript|length=1423bp|location=Sequence derived from alignment at sc0000708:74322..75744 (Clytia hemisphaerica)
Ntctgaatctcaagtggtcaggagttatgaccaaaagactgtgtatcggt
aaaatggccttttcaaaacgtatatatacgtattctggcttctaagggtt
aagaaaaaaatgagaaagaacAAATTATTTCCAGAATTCTAGAACACAGC
TCATTAACTTCGTTTCTTGACCAAAAAGTTAGGGAAGGCAAAAATTATGT
TGCCTAAGTATGAAAATCCTGCTATGAGTttgtcaacaacaacaaagtcG
AACCCAGTTCCTTAGCTCTCTTTTCATTATTCAGATAAGCTCACGATTAT
ATCACattcatcagtaaaatcaaaacgtggcgcaagtggctctgggtacg
agcTTTCCAAAACAGTGCAAAGAATTTATTCTAATGTGTTCAATTTAATG
GTTTAAGAAAGCTAACACCATACCGGTTAACGTATCAGCAGGAACCATTC
TAGCATTCCCATTTCCACGTTCCAAAGCCTGTCGATCAATAATCTTTTTA
CGgattaaattcccaccaataATGCGGCCTAATGTTTCATTTTCCAGCTC
TGGATGGCCTTGGAAAGATAGAATATGATCATCATATAGTAACGCTTCGG
CCTTGCAAGTTGTCGAAGAGGCAACTGTGATTGCATTCTTAGGAACTGTG
TAAACTTCTTCACCATGTGATTGTGCTACCATTATGTTACTTGAATGATA
TTGCAAAGCTTGCTTAAACCATACTTCATCGCTTAACTTGTTGGTAAAAT
TCACTTTCTCAGCACCGTATATAAATTTACCGTCTCCGATGGGTTGGACA
ACTCCACCAAATGTCTTTGCAATCAGTTGATGTCCGTAACAAATTCCGAA
AAGTCGGACAGGCTTATTTCTGTTCTCTTTGTTGTATTGATCGAGTTGAA
TGATAAAGTTTTGTAAATTCATGATCCATTGATAAGGATCGTTTACACTA
TGATGTGAACCGCTGATCACAAATCCGATGTAGTTTGGAAGCTGACTTAT
TTTTGGTAAGGACCCAGTTACACCGTGAATGACTTCATATTCAAAACTAT
CATCAACTTGTTGGAATCGttgtaagaaatattttccAATCCCTGCTTCA
CCCTTCCATTTTTCACCATCTTCGGTCATGATAAATGCAATCTTTTTCGG
CGACATTTTCGTCGAAGAGTATTTTACTGATTGTAAATGAGCTAGATTTA
CTGTTTTAACTTTTATAAGCTTCTTTGTTGACAAATTTTGTCGGTTGTAC
TGTGTTAGTATGTTTCTAAAACGAGAATAGTTCATAGTTAGAAAAAGTTG
TGAATTTAAAGACAAAATGAAAGGATAAAAATCTATCATTTTTGATTTTT
TAATAATTTATCGGCATTAATTTTCCTTGAATAGTATACAGACACCTATT
GAATTTACAAAATTCAAATATTG Coding sequence (CDS) from alignment at sc0000708:74322..75744 >TCONS_00028863 ID=TCONS_00028863|Name=TCONS_00028863|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0000708:74322..75744 (Clytia hemisphaerica)
TTAATGGTTTAAGAAAGCTAACACCATACCGGTTAACGTATCAGCAGGAA
CCATTCTAGCATTCCCATTTCCACGTTCCAAAGCCTGTCGATCAATAATC
TTTTTACGgattaaattcccaccaataATGCGGCCTAATGTTTCATTTTC
CAGCTCTGGATGGCCTTGGAAAGATAGAATATGATCATCATATAGTAACG
CTTCGGCCTTGCAAGTTGTCGAAGAGGCAACTGTGATTGCATTCTTAGGA
ACTGTGTAAACTTCTTCACCATGTGATTGTGCTACCATTATGTTACTTGA
ATGATATTGCAAAGCTTGCTTAAACCATACTTCATCGCTTAACTTGTTGG
TAAAATTCACTTTCTCAGCACCGTATATAAATTTACCGTCTCCGATGGGT
TGGACAACTCCACCAAATGTCTTTGCAATCAGTTGATGTCCGTAACAAAT
TCCGAAAAGTCGGACAGGCTTATTTCTGTTCTCTTTGTTGTATTGATCGA
GTTGAATGATAAAGTTTTGTAAATTCATGATCCATTGATAAGGATCGTTT
ACACTATGATGTGAACCGCTGATCACAAATCCGATGTAGTTTGGAAGCTG
ACTTATTTTTGGTAAGGACCCAGTTACACCGTGAATGACTTCATATTCAA
AACTATCATCAACTTGTTGGAATCGttgtaagaaatattttccAATCCCT
GCTTCACCCTTCCATTTTTCACCATCTTCGGTCATGATAAATGCAATCTT
TTTCGGCGACATTTTCGTCGAAGAGTATTTTACTGATTGTAAATGAGCTA
GATTTACTGTTTTAACTTTTATAAGCTTCTTTGTTGACAAATTTTGTCGG
TTGTACTGTGTTAGTATGTTTCTAAAACGAGAATAGTTCATAGTTAGAAA
AAGTTGTGAATTTAAAGACAAAATGAAAGGATAAAAATCTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028863-exon-sc0000708-1491911889:74322..75744 | TCONS_00028863-exon-sc0000708-1491911889:74322..75744 | Clytia hemisphaerica | exon |
| TCONS_00028863-exon-sc0000708-1510915933:74322..75744 | TCONS_00028863-exon-sc0000708-1510915933:74322..75744 | Clytia hemisphaerica | exon |
| TCONS_00028863-exon-sc0000708-1575043694:74322..75744 | TCONS_00028863-exon-sc0000708-1575043694:74322..75744 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:74322..75744 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
