TCONS_00028862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028862
Unique NameTCONS_00028862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028862 ID=TCONS_00028862|Name=TCONS_00028862|organism=Clytia hemisphaerica|type=transcript|length=386bp
NNctttccaacgataccaaagttgatacctaaatcgtttgtcctggtcca
gaaattgcctttgaaagaataaatttccagaaaaaaatgatgaacttttt
gacctttttcaaaaaaagacagcggcttctaaaggttaaaACCATGCTTT
TTCTGACGTTTTGTGATAAGGTTAAAAAAAGACTGTCTTTACTGTGATTT
TGGAGACCACTAAAAACAACTCAAACATCTAGGTTATATAAATATCATTT
TAGATTTAGTTTTAGTTTATAATACGGAGGTATTTCGTAATTTACATTTT
ATAAGGTAATTTTTGCAAATAGGATGACTATGACTTCATGTCGTGTAAAT
ATAATTGtaatgaatttcaaaaagactcgaaaaatt
Run BLAST on NCBI

transcript from alignment at sc0000708:73142..73527

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028862 ID=TCONS_00028862|Name=TCONS_00028862|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at sc0000708:73142..73527 (Clytia hemisphaerica)
aatttttcgagtctttttgaaattcattaCAATTATATTTACACGACATG
AAGTCATAGTCATCCTATTTGCAAAAATTACCTTATAAAATGTAAATTAC
GAAATACCTCCGTATTATAAACTAAAACTAAATCTAAAATGATATTTATA
TAACCTAGATGTTTGAGTTGTTTTTAGTGGTCTCCAAAATCACAGTAAAG
ACAGTCTTTTTTTAACCTTATCACAAAACGTCAGAAAAAGCATGGTttta
acctttagaagccgctgtctttttttgaaaaaggtcaaaaagttcatcat
ttttttctggaaatttattctttcaaaggcaatttctggaccaggacaaa
cgatttaggtatcaactttggtatcgttggaaagNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016380XLOC_016380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028862-exon-sc0000708-1491911889:73142..73527TCONS_00028862-exon-sc0000708-1491911889:73142..73527Clytia hemisphaericaexon
TCONS_00028862-exon-sc0000708-1510915933:73142..73527TCONS_00028862-exon-sc0000708-1510915933:73142..73527Clytia hemisphaericaexon
TCONS_00028862-exon-sc0000708-1575043694:73142..73527TCONS_00028862-exon-sc0000708-1575043694:73142..73527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000708supercontigsc0000708:73142..73527 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.791916	0.800132	1.6447	1.12132	1.08121	3.20396	2.06157	1.68876	4.59448	5.29047	4.41378	0.800948	1.73298	2.07659	0.682896	0.61071	0.300938	0.308452	0	1.11482	2.90694	1.70148	1.36374	1.0447	7.7844	6.72222	1.98052	3.89229	1.2756	2.26664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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