TCONS_00028861 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028861
Unique NameTCONS_00028861
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028861 ID=TCONS_00028861|Name=TCONS_00028861|organism=Clytia hemisphaerica|type=transcript|length=1564bp
tttagttAATTATCTTATCTACCTGGTTGAAGAAAGAAATGTCATATCCA
AAGCAACAAAAGCTTGGAAGTGGAGCATTTGGTGAGGTTTGGAAGTGTTC
AACTCCAAAGGAGAAACCATTCTACAAAAAACACCCTACAGTTGCAATCA
AATATATTTCCAAAGTCAATGAAGACGTCATAAAAGAAATAGCCATTTTA
CGCGGTGCCAAGCACTTCTGTGTTTTGGAATATCTCGATTCCTTTATGCG
CAATGGAAACATGTACATTGTGACAGAGTTGTGTCTTGCTGACATAAAAA
GTCAGCTACCTGGAAAGCTTAACTTGTCAGAATACAATATTTGGAGATTT
TTGGGGCACATGGCAAGTGCTCTTGCATATTTGCATCGAAATGGCATTAT
CCATAGGGATATAAAGccacaaaatattttgatccgCCAAAAGAATGCTA
AGCCAACCTGTTGTGTAAGTCATAACAATCAGCCTATAACTGTCTTTTTT
GTTCTGGCTGATTTTGGTTTATCAAAATTGCTCACGAGTGCACAGATTGC
AAGTGTTTATAATCTTTCGACTGGAGTGGGTACTCCCATCTATTGGTCAC
CTGAGAATCTAAAAGCTGCCTTTTTGAAAGGAGTTGACCCAACTGGTAGA
GCATCTGATATTTGGTCACTTGGAGCTGTCATGTCTGAGTTATGTAACAA
TGGTACTGTTTTGTTCGACAGTTTGGCCAAGATTCGTAACTGGAATGGAG
CCTCAAGTCCTCTACCCTCAACATATGGGCCTGCAATACGGAATCTGATT
AAATCAATGCTGAATCCTAATGCAAGCTATCGTCCATCAGCACAATCAGT
GTTTAATGAGTGTACTGATTCTAGAGAAGAAAGGGGACGCCATACATCGT
TTTGTGGCGATAGGGACCAAAAGCCTCCCTCAAACTAatgtagaaaaaaa
ttgtccCAAGTTTGATACAATGTTATTTTTGGGATGaagtttaaattaaa
aaaaaaaacaactgtgAATTTGAGTATGATAACAattaaaagattatttt
tgCTATTCAATGTTTTATTTCTACTAGAGCCTAGGCTTTAATTATGCATG
GAATTATCTAAGTAAGTCACTTAAGAATATTTTGGTTTTTTACATCAGGG
TAATAACCTAATCTGTGAAATGAGATGGAATAGGGAATAGGCTGAGGCAG
CTTTTTCAATAATGTACGGCTGGAGTGCAGTAGGAACatccattttttat
atttgactcTCTTCATACCTTCAATTTGAATGTAATGTAATGAAATACAt
ttattaatttgaaaaattcagaATAAATTATCTATTCCAATATTCCAATT
TATAATGCATGATTACATGGAACAGTGGGTAACATTGTAATACCATTTTA
AAGTTCTTATTGATTATATTTGTATTGTTTTCATTGTAATTAAGAATTAT
TGTATTTTAcacatttttcgattttttccactatctcgtaaagtaaaagc
ttttttagGTTATCTAACCATGATCAGCTCATTGTAGAATTTTTAATGAA
TAACTGAACAGCCG
Run BLAST on NCBI

protein sequence of TCONS_00028861-protein

>TCONS_00028861-protein ID=TCONS_00028861-protein|Name=TCONS_00028861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MSYPKQQKLGSGAFGEVWKCSTPKEKPFYKKHPTVAIKYISKVNEDVIKE
IAILRGAKHFCVLEYLDSFMRNGNMYIVTELCLADIKSQLPGKLNLSEYN
IWRFLGHMASALAYLHRNGIIHRDIKPQNILIRQKNAKPTCCVSHNNQPI
TVFFVLADFGLSKLLTSAQIASVYNLSTGVGTPIYWSPENLKAAFLKGVD
PTGRASDIWSLGAVMSELCNNGTVLFDSLAKIRNWNGASSPLPSTYGPAI
RNLIKSMLNPNASYRPSAQSVFNECTDSREERGRHTSFCGDRDQKPPSN
Run BLAST on NCBI

transcript from alignment at sc0000708:57119..58682

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028861 ID=TCONS_00028861|Name=TCONS_00028861|organism=Clytia hemisphaerica|type=transcript|length=1564bp|location=Sequence derived from alignment at sc0000708:57119..58682 (Clytia hemisphaerica)
CGGCTGTTCAGTTATTCATTAAAAATTCTACAATGAGCTGATCATGGTTA
GATAACctaaaaaagcttttactttacgagatagtggaaaaaatcgaaaa
atgtgTAAAATACAATAATTCTTAATTACAATGAAAACAATACAAATATA
ATCAATAAGAACTTTAAAATGGTATTACAATGTTACCCACTGTTCCATGT
AATCATGCATTATAAATTGGAATATTGGAATAGATAATTTATtctgaatt
tttcaaattaataaaTGTATTTCATTACATTACATTCAAATTGAAGGTAT
GAAGAgagtcaaatataaaaaatggatGTTCCTACTGCACTCCAGCCGTA
CATTATTGAAAAAGCTGCCTCAGCCTATTCCCTATTCCATCTCATTTCAC
AGATTAGGTTATTACCCTGATGTAAAAAACCAAAATATTCTTAAGTGACT
TACTTAGATAATTCCATGCATAATTAAAGCCTAGGCTCTAGTAGAAATAA
AACATTGAATAGcaaaaataatcttttaatTGTTATCATACTCAAATTca
cagttgtttttttttttaatttaaacttCATCCCAAAAATAACATTGTAT
CAAACTTGggacaatttttttctacatTAGTTTGAGGGAGGCTTTTGGTC
CCTATCGCCACAAAACGATGTATGGCGTCCCCTTTCTTCTCTAGAATCAG
TACACTCATTAAACACTGATTGTGCTGATGGACGATAGCTTGCATTAGGA
TTCAGCATTGATTTAATCAGATTCCGTATTGCAGGCCCATATGTTGAGGG
TAGAGGACTTGAGGCTCCATTCCAGTTACGAATCTTGGCCAAACTGTCGA
ACAAAACAGTACCATTGTTACATAACTCAGACATGACAGCTCCAAGTGAC
CAAATATCAGATGCTCTACCAGTTGGGTCAACTCCTTTCAAAAAGGCAGC
TTTTAGATTCTCAGGTGACCAATAGATGGGAGTACCCACTCCAGTCGAAA
GATTATAAACACTTGCAATCTGTGCACTCGTGAGCAATTTTGATAAACCA
AAATCAGCCAGAACAAAAAAGACAGTTATAGGCTGATTGTTATGACTTAC
ACAACAGGTTGGCTTAGCATTCTTTTGGcggatcaaaatattttgtggCT
TTATATCCCTATGGATAATGCCATTTCGATGCAAATATGCAAGAGCACTT
GCCATGTGCCCCAAAAATCTCCAAATATTGTATTCTGACAAGTTAAGCTT
TCCAGGTAGCTGACTTTTTATGTCAGCAAGACACAACTCTGTCACAATGT
ACATGTTTCCATTGCGCATAAAGGAATCGAGATATTCCAAAACACAGAAG
TGCTTGGCACCGCGTAAAATGGCTATTTCTTTTATGACGTCTTCATTGAC
TTTGGAAATATATTTGATTGCAACTGTAGGGTGTTTTTTGTAGAATGGTT
TCTCCTTTGGAGTTGAACACTTCCAAACCTCACCAAATGCTCCACTTCCA
AGCTTTTGTTGCTTTGGATATGACATTTCTTTCTTCAACCAGGTAGATAA
GATAATTaactaaa

Coding sequence (CDS) from alignment at sc0000708:57119..58682

>TCONS_00028861 ID=TCONS_00028861|Name=TCONS_00028861|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000708:57119..58682 (Clytia hemisphaerica)
tTAGTTTGAGGGAGGCTTTTGGTCCCTATCGCCACAAAACGATGTATGGC
GTCCCCTTTCTTCTCTAGAATCAGTACACTCATTAAACACTGATTGTGCT
GATGGACGATAGCTTGCATTAGGATTCAGCATTGATTTAATCAGATTCCG
TATTGCAGGCCCATATGTTGAGGGTAGAGGACTTGAGGCTCCATTCCAGT
TACGAATCTTGGCCAAACTGTCGAACAAAACAGTACCATTGTTACATAAC
TCAGACATGACAGCTCCAAGTGACCAAATATCAGATGCTCTACCAGTTGG
GTCAACTCCTTTCAAAAAGGCAGCTTTTAGATTCTCAGGTGACCAATAGA
TGGGAGTACCCACTCCAGTCGAAAGATTATAAACACTTGCAATCTGTGCA
CTCGTGAGCAATTTTGATAAACCAAAATCAGCCAGAACAAAAAAGACAGT
TATAGGCTGATTGTTATGACTTACACAACAGGTTGGCTTAGCATTCTTTT
GGcggatcaaaatattttgtggCTTTATATCCCTATGGATAATGCCATTT
CGATGCAAATATGCAAGAGCACTTGCCATGTGCCCCAAAAATCTCCAAAT
ATTGTATTCTGACAAGTTAAGCTTTCCAGGTAGCTGACTTTTTATGTCAG
CAAGACACAACTCTGTCACAATGTACATGTTTCCATTGCGCATAAAGGAA
TCGAGATATTCCAAAACACAGAAGTGCTTGGCACCGCGTAAAATGGCTAT
TTCTTTTATGACGTCTTCATTGACTTTGGAAATATATTTGATTGCAACTG
TAGGGTGTTTTTTGTAGAATGGTTTCTCCTTTGGAGTTGAACACTTCCAA
ACCTCACCAAATGCTCCACTTCCAAGCTTTTGTTGCTTTGGATATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016379XLOC_016379Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028861-proteinTCONS_00028861-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028861-exon-sc0000708-1491911889:57119..58682TCONS_00028861-exon-sc0000708-1491911889:57119..58682Clytia hemisphaericaexon
TCONS_00028861-exon-sc0000708-1510915933:57119..58682TCONS_00028861-exon-sc0000708-1510915933:57119..58682Clytia hemisphaericaexon
TCONS_00028861-exon-sc0000708-1575043694:57119..58682TCONS_00028861-exon-sc0000708-1575043694:57119..58682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000708supercontigsc0000708:57119..58682 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0523657	0.0765972	0.0592911	0.145018	0.105927	0.139508	0.47127	0.472712	2.62559	4.91932	1.67118	1.69145	4.70161	4.43057	12.9198	11.8706	7.29214	7.35333	11.4115	10.5433	3.06312	3.6673	3.66253	4.17586	2.16457	3.7884	3.01576	2.91197	4.5335	3.19771
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00028861 vs. Swiss-Prot (Human)
Match: NEK6 (Serine/threonine-protein kinase Nek6 OS=Homo sapiens GN=NEK6 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.295e-25
Identity = 80/282 (28.37%), Postives = 127/282 (45.04%), Query Frame = 3 
Query:   54 QQKLGSGAFGEVWKCSTPKEKPFYKKHPTVAIKYI-------SKVNEDVIKEIAILRGAKHFCVLEYLDSFMRNGNMYIVTELCLADIKSQL-----PGKLNLSEYNIWRFLGHMASALAYLHRNGIIHRDIKPQNILIRQKNAKPTCCVSHNNQPITVFFVLADFGLSKLLTSAQIASVYNLSTGVGTPIYWSPENLKAAFLKGVDPTGRASDIWSLGAVMSELC-------NNGTVLFDSLAKIRNWNGASSPLPST-YGPAIRNLIKSMLNPNASYRPS 839
            ++K+G G F EV+K +   ++       TVA+K +       +K  +D +KEI +L+   H  +++YLDSF+ +  + IV EL  A   SQ+       K  + E  +W++   + SA+ ++H   ++HRDIKP N+ I                  T    L D GL +  +S   A+     + VGTP Y SPE +        +     SDIWSLG ++ E+         +   LF    KI   +    PLP   Y   +R L+   + P+   RP 
Sbjct:   48 EKKIGRGQFSEVYKATCLLDRK------TVALKKVQIFEMMDAKARQDCVKEIGLLKQLNHPNIIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFIT----------------ATGVVKLGDLGLGRFFSSETTAA----HSLVGTPYYMSPERIHE------NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCD--YPPLPGEHYSEKLRELVSMCICPDPHQRPD 295
The following BLAST results are available for this feature:
BLAST of TCONS_00028861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEK62.295e-2528.37Serine/threonine-protein kinase Nek6 OS=Homo sapie... [more]
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