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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028857 ID=TCONS_00028857|Name=TCONS_00028857|organism=Clytia hemisphaerica|type=transcript|length=1637bp
tttttatgttttgatgattacTATCAGCAATAGGTTTTCCTTATGGTTCA
TCAACAGTCTTTAATTGAAAAAGGCATATGGTTGGAAAAGAAGCTTGAAA
GAAACCTCTaaggtaaaatttcaaattgttctcTTCATAGGGCCTTAGAT
TGCAGCTTCTAACCCTGCGCCAATATTGAGAGGGTATTGATATAACAAAT
GGAGTATCTGCTTTCGTATATTTTTATTGCAGCATTTAGTTCTTTTGTCC
AATCGACCCCTATTGGTCAAACTATTTTGAAATGTGAAATTCACAACTCG
ATTATTGTCATCACTGGCAATTCACCAGAACGCACCATCAATGGAAAATT
AAATCTCCAGTATTTTAATCCTCAGAACAAAGCAAAAGGTGATCTAATCT
GTAGTCAATCACCAGAAAATCAGACAGCTATTTGTAATACTAAATCTAGC
CTGGATGAATTCAAGCAGAATGTCAGAGGCTATTTGATTTTAACTAAAGA
TGGCAGTGATACTGGGATATCCTGCACCAATAATAAGAAAGATACATCTG
TTGCCGAGCCCACCGAAGAATGGCATAGATATAATTacatttatatcaaa
atttctGGACATTGTTTCTTGGGGATTGTTTTGTTGgtcataattttatt
acttGGTTTCATGATTTATTGGAAATTTAACGGTGATGAGATACGAACAC
CGAANGTTAGTTGGTTTCATGATTTATTGGAAATTTAACGGTGACGAGAT
ACGAACACCGAAAAATCTCCTTGTGAACCAGGATGAAAGAAGCTCTTCCG
GTCATATCGAAGGTGTGGTGTCAGTGAGTATTGGGCAAGATAAACCAAAT
GAATGTGCAATGAAGCAACCTACTAAAAGTGCTTGAACGACGATTTTTTG
TAGAGACTTAGAAACTAGTTTAAGCATTATAACAAGAATTTGACAATAAT
ATTTTCGAGAATATTCTTATTATGAAACGTGGAAGAAAACGATGTAAAAT
AACATAAATTTTCGATTGGTATTGAAAAGGTTCAAAAGAAAAGACAATAA
TCAGAAAAACCTAAGCTTTATAAACTGTGGCAGATGTCTTTGGTGATATA
TTGCATTTGAATTTTTCGGAGAGCAACTTTCACTTTTAGTAGACGCAGAA
TAATTAAAACTGTGATTATTTTTCAatacacgtgtttttttttcgaaatt
tatattttgttataATCTAATAATCATTACCAATAGAAAATGTTTCATCG
TGGCTCCGTATGATCAAGTAGAAACAAGAGTATCGATTCCCATgcgaaag
tttttatttttcaatttttggatttACGTACTTTACTACTTacaatatat
atttttcaaagataaaatagaaaattaatcaaaaaaaactttgtttatAC
CCCTTATTGCCATTGATGTAACCTAATAATATTACAAGAGATATTACTAC
AGTCgattttctctaattcgattttcaagggaccaaaaattgttttcaaa
tagacgatatcggcttaacgaaattctccccgaatgattacccatgatgc
attgcgcaaaaaaattcagttagtcaatattgtccgtgaatttttttgca
caatgcatcatgggtaatcattcggggagaattcgga Run BLAST on NCBI protein sequence of TCONS_00028857-protein >TCONS_00028857-protein ID=TCONS_00028857-protein|Name=TCONS_00028857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MEYLLSYIFIAAFSSFVQSTPIGQTILKCEIHNSIIVITGNSPERTINGK
LNLQYFNPQNKAKGDLICSQSPENQTAICNTKSSLDEFKQNVRGYLILTK
DGSDTGISCTNNKKDTSVAEPTEEWHRYNYIYIKISGHCFLGIVLLVIIL
LLGFMIYWKFNGDEIRTPXVSWFHDLLEI Run BLAST on NCBI transcript from alignment at sc0000708:132525..134229- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028857 ID=TCONS_00028857|Name=TCONS_00028857|organism=Clytia hemisphaerica|type=transcript|length=1705bp|location=Sequence derived from alignment at sc0000708:132525..134229- (Clytia hemisphaerica)
TTTTTATGTTTTGATGATTACTATCAGCAATAGGTTTTCCTTATGGTTCA
TCAACAGTCTTTAATTGAAAAAGGCATATGGTTGGAAAAGAAGCTTGAAA
GAAACCTCTAAGGTAAAATTTCAAATTGTTCTCTTCATAGGGCCTTAGAT
TGCAGCTTCTAACCCTGCGCCAATATTGAGAGGGTATTGATATAACAAAT
GGAGTATCTGCTTTCGTATATTTTTATTGCAGCATTTAGTTCTTTTGTCC
AATCGACCCCTATTGGTCAAACTATTTTGAAATGTGAAATTCACAACTCG
ATTATTGTCATCACTGGCAATTCACCAGAACGCACCATCAATGGAAAATT
AAATCTCCAGTATTTTAATCCTCAGAACAAAGCAAAAGGTGATCTAATCT
GTAGTCAATCACCAGAAAATCAGACAGCTATTTGTAATACTAAATCTAGC
CTGGATGAATTCAAGCAGAATGTCAGAGGCTATTTGATTTTAACTAAAGA
TGGCAGTGATACTGGGATATCCTGCACCAATAATAAGAAAGATACATCTG
TTGCCGAGCCCACCGAAGAATGGCATAGATATAATTACATTTATATCAAA
ATTTCTGGACATTGTTTCTTGGGGATTGTTTTGTTGGTCATAATTTTATT
ACTTGGTTTCATGATTTATTGGAAATTTAACGGTGATGAGATACGAACAC
CGAANGTTAGTTGGTTTCATGATTTATTGGAAATTTAACGGTGACGAGAT
ACGAACACCGAAAAATCTCCTTGTGAACCAGGATGAAAGAAGCTCTTCCG
GTCATATCGAAGGTGTGGTGTCAGTGAGTATTGGGCAAGATAAACCAAAT
GAATGTGCAATGAAGCAACCTACTAAAAGTGCTTGAACGACGATTTTTTG
TAGAGACTTAGAAACTAGTTTAAGCATTATAACAAGAATTTGACAATAAT
ATTTTCGAGAATATTCTTATTATGAAACGTGGAAGAAAACGATGTAAAAT
AACATAAATTTTCGATTGTTATTGAAAAGGTTCAAAAGAAAAGACAATAA
TCAGAAAAACCTAAGCTTNACATAAATTTTCGATTGGTATTGAAAAGGTT
CAAAAGAAAAGACAATAATCAGAAAAACCTAAGCTTTATAAACTGTGGCA
GATGTCTTTGGTGATATATTGCATTTGAATTTTTCGGAGAGCAACTTTCA
CTTTTAGTAGACGCAGAATAATTAAAACTGTGATTATTTTTCAATACACG
TGTTTTTTTTTCGAAATTTATATTTTGTTATAATCTAATAATCATTACCA
ATAGAAAATGTTTCATCGTGGCTCCGTATGATCAAGTAGAAACAAGAGTA
TCGATTCCCATGCGAAAGTTTTTATTTTTCAATTTTTGGATTTACGTACT
TTACTACTTACAATATATATTTTTCAAAGATAAAATAGAAAATTAATCAA
AAAAAACTTTGTTTATACCCCTTATTGCCATTGATGTAACCTAATAATAT
TACAAGAGATATTACTACAGTCGATTTTCTCTAATTCGATTTTCAAGGGA
CCAAAAATTGTTTTCAAATAGACGATATCGGCTTAACGAAATTCTCCCCG
AATGATTACCCATGATGCATTGCGCAAAAAAATTCAGTTAGTCAATATTG
TCCGTGAATTTTTTTGCACAATGCATCATGGGTAATCATTCGGGGAGAAT
TCGGA Coding sequence (CDS) from alignment at sc0000708:132525..134229- >TCONS_00028857 ID=TCONS_00028857|Name=TCONS_00028857|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0000708:132525..134229- (Clytia hemisphaerica)
ATGGAGTATCTGCTTTCGTATATTTTTATTGCAGCATTTAGTTCTTTTGT
CCAATCGACCCCTATTGGTCAAACTATTTTGAAATGTGAAATTCACAACT
CGATTATTGTCATCACTGGCAATTCACCAGAACGCACCATCAATGGAAAA
TTAAATCTCCAGTATTTTAATCCTCAGAACAAAGCAAAAGGTGATCTAAT
CTGTAGTCAATCACCAGAAAATCAGACAGCTATTTGTAATACTAAATCTA
GCCTGGATGAATTCAAGCAGAATGTCAGAGGCTATTTGATTTTAACTAAA
GATGGCAGTGATACTGGGATATCCTGCACCAATAATAAGAAAGATACATC
TGTTGCCGAGCCCACCGAAGAATGGCATAGATATAATTACATTTATATCA
AAATTTCTGGACATTGTTTCTTGGGGATTGTTTTGTTGGTCATAATTTTA
TTACTTGGTTTCATGATTTATTGGAAATTTAACGGTGATGAGATACGAAC
ACCGAANGTTAGTTGGTTTCATGATTTATTGGAAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028857-exon-sc0000708-1575043694:133227..134229 | TCONS_00028857-exon-sc0000708-1575043694:133227..134229 | Clytia hemisphaerica | exon |
| TCONS_00028857-exon-sc0000708-1575043694:132525..133158 | TCONS_00028857-exon-sc0000708-1575043694:132525..133158 | Clytia hemisphaerica | exon |
| TCONS_00028857-exon-sc0000708-1510915933:133227..134229 | TCONS_00028857-exon-sc0000708-1510915933:133227..134229 | Clytia hemisphaerica | exon |
| TCONS_00028857-exon-sc0000708-1510915933:132525..133158 | TCONS_00028857-exon-sc0000708-1510915933:132525..133158 | Clytia hemisphaerica | exon |
| TCONS_00028857-exon-sc0000708-1491911889:133227..134229 | TCONS_00028857-exon-sc0000708-1491911889:133227..134229 | Clytia hemisphaerica | exon |
| TCONS_00028857-exon-sc0000708-1491911889:132525..133158 | TCONS_00028857-exon-sc0000708-1491911889:132525..133158 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:132525..134229 - |
Blast
The following BLAST results are available for this feature:
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