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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028855 ID=TCONS_00028855|Name=TCONS_00028855|organism=Clytia hemisphaerica|type=transcript|length=2920bp
ACACAACTATTTTCCTTTTGCAAAGTCTTGGGTTTCTAATAAATGTCAAG
AAGTCAGTTTTCGAACCAACCCAAAAGATAGAATTCTTGGGGATGATAAT
AGACTCAATCAAAATGACTCTAAGCCTTCCAGAAGAGAAGGTGGTTGCCA
TAAAGAAGCAATGCTCAGAAATGTTAGAAAAGGAAAAGGTTCCCCTGAGG
GAGTTATCGAAACTAGTGGGCAGGTTGTCTGCCTCAATGCTAGCAATATT
ACCAGCAACCTTTCAATACAGGAGCCTTCAACGACAACAGATTTCAGAGT
TGAAGGAACAGGGTTCATACAATCACGTAGTGGAATTGACAGAGGAGGtg
aaaaaggaaataaattGGTGGCTCTTGAACCTAGAACTTTACAATGGGAG
GAGTCTAATAACCCCACCTCCACAGATAGTAATCCAAACGGATGCCTCCA
AAACAGGATGGGGAGCTGCTTGTCGGAGTTTAAGAACAGGGGGTCCATGG
TCTCTGGAGGAACAGCAGGAACATATAAATGTTTTGGAATTAAAAGCAGC
CAGGATAGTACTATTGACATTCATACCAAGGTTCAGGGCAACGTCGGGCC
TTGAAGTATCTCCTAAAAATGGGGGGGACCAAGAGTGCCACTATGAATCA
GATAAGCAAGGAAGTCTGGGATTTTTTGATGGCAGGCAAGATCACCCTTA
CTGCCGAATTTCTCCCGGGGAAAAAGAACATAGAGGCGGACACGGAATCC
AGAAGGAAGGACTCCAGCGAATGGAAATTAAAACCATCCCTATTCAGAAG
ACTGAGTCAGGTGAGGGGCACCCCGGACATAGATCTGTTTGCATCCAGAG
TGTCGAACCAGGTTCCAGCttatttttcttggaaaatggaTCCTTTCAGC
CAGGGGCAGGATGCCTTCCAACAGGATTGGAGAAATGTCAGAGGTTATGC
CTTTCCCCCCTTCTCCCTAATAGGAAGGGTGCTAAGGAAAATAGTATCAG
ACCAAACCATGGTTCTTCTGATAACACCAGCCTGGCAGGGGCAGCCTTGG
TATCCAATAGCACTTCAATTGTCAGTAATGAATCCAATTCTTTTACCTAT
GGAAGAAGACCTTCTGAAACATCAAGGAAAGGTTCATCCTCTAGTCTCGA
ACAGGTCCCTCAGGCTGATTGCATGGATGTTGTCAGGGAACAGCTTGCTT
CAAAAGGCGTATCAGAGAAATCTTCGGACCTTATCGTCAACTCCAGAAGA
TCAGGAACTCAATCTCATTACAAATCGGCCTGGGGAAAGTGGGCTAGCTG
GTGTATGGAACAAAAGATTGATCCCGTTCGATGTCCTGTAAAGCATATTC
TAGATTTTCTTACTGATCTGTGTACAAAGGGACTCCAATATAGTACTATA
GGTGGGTACAGATCAGCATTTCAGCTTTTCATGAAAATTGTGATGGGTCT
TCAATAGGGGAACATCCTCTTGTCAAAAGGCTGATGGTTGGTATTTTCAA
CAAGAGACCACCTCAACCTCGTTATGGATTCACTTGGGACGTTGAAACGG
TCCTTAGGTACATAAATGGTCTAGATTCTTCTACAATAGACATTAAGTTA
CTGTCATTAAAACTAACAGTACTGTTGGCCTTAACCGGGGCATCCAGGGC
TTCGGAACTTAACATTCTTGATACAAAGTTTCTATCTAAGTATTCTTCAG
TTTACATCTTTGAACTAGATGGTGTAACTAAAACACAAAAGCCTGGGGAT
TCGCCGACTAAAATAAAATTGTTCAGATTTCAGGAGAACTTATCTCTTTG
TGTGTGCCATACAATAGACGAGTTCTTGTCTAGAACTAAGGAACGAAGGG
GAACGGAAACTAGACTCCTAATATCACATATCAAACCATATAGAAGAGTT
TCTACAGACACAGTTTCAAGGTGGTTAAAAACGATAATTGGATTAGCAGG
CATTGATACTAAGATTTTTAAAGGACATTCTACAAGATCAGCGACCACTT
CTAAAGCTTCCAGTCTGGGGATCTCTGTGAGATATCATCCAGATCTTAGA
AAgagctactctcgggtacctaatagccggggggattggaataagcgggg
ggattggaaaaactctcgaaacttaataagcgggggggttggaataaaaa
tatcctgggtggaaaatttttgaaaaggaggctaatacagcagaattagg
acaaaagaggggaactttcaaaaacattttcccaaaaattaataagcggg
ggggttggaataagaatgtcctgggtggaaaattttcgaaaaattaatNT
ATCAAACCATATAGAAGAGTTTCTACAGACACAGTTTCAAGGTAATTCTG
CTTTCAGAGGACGCGGACGTGGCCGAGGAAGATTTGGTGGATGATTGAAA
TATTATTTCAATGAAAGATACGATTCTTAAACTAAATATTGAtattgttt
ctttctttctttatgtTTTATCCCGGACTTGTCCTAGATTTACGATGCGA
GTGAGGGCGGTAACCAATATTAGATCGTTGGCTTcgattttattcataaa
atcgGGATTGCACTGCGGGCCCTTCGGGCCCTTGCACAATCCTCAAATGT
ACTTTTAGGAATGAAGAAATAATTACTGCTCTCTTGTTCTTCAATTCACA
AACCATAACATCACACGCtccctgaaaatgaaaatgagaatAATGAGACA
CGAGATAAATATTatcgtttttttcttcaaaaaagtgCAATCTTATTGTA
TAGATGACTTTTatgattagtatatgtaatcacatgataacgagtgcaat
tcgaatataattgcacgagtgatttttttcgaaaggacgaggaaaattcg
aaacaaaaaaatcacgagtgcaattttcgaattgtacgagttattatgtg
attacgagctaatcgcacaa Run BLAST on NCBI protein sequence of TCONS_00028855-protein >TCONS_00028855-protein ID=TCONS_00028855-protein|Name=TCONS_00028855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
TTIFLLQSLGFLINVKKSVFEPTQKIEFLGMIIDSIKMTLSLPEEKVVAI
KKQCSEMLEKEKVPLRELSKLVGRLSASMLAILPATFQYRSLQRQQISEL
KEQGSYNHVVELTEEVKKEINWWLLNLELYNGRSLITPPPQIVIQTDASK
TGWGAACRSLRTGGPWSLEEQQEHINVLELKAARIVLLTFIPRFRATSGL
EVSPKNGGDQECHYESDKQGSLGFFDGRQDHPYCRISPGEKEHRGGHGIQ
KEGLQRMEIKTIPIQKTESGEGHPGHRSVCIQSVEPGSSLFFLENGSFQP
GAGCLPTGLEKCQRLCLSPLLPNRKGAKENSIRPNHGSSDNTSLAGAALV
SNSTSIVSNESNSFTYGRRPSETSRKGSSSSLEQVPQADCMDVVREQLAS
KGVSEKSSDLIVNSRRSGTQSHYKSAWGKWASWCMEQKIDPVRCPVKHIL
DFLTDLCTKGLQYSTIGGYRSAFQLFMKIVMGLQ Run BLAST on NCBI transcript from alignment at sc0000708:33488..36876- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028855 ID=TCONS_00028855|Name=TCONS_00028855|organism=Clytia hemisphaerica|type=transcript|length=3389bp|location=Sequence derived from alignment at sc0000708:33488..36876- (Clytia hemisphaerica)
ACACAACTATTTTCCTTTTGCAAAGTCTTGGGTTTCTAATAAATGTCAAG
AAGTCAGTTTTCGAACCAACCCAAAAGATAGAATTCTTGGGGATGATAAT
AGACTCAATCAAAATGACTCTAAGCCTTCCAGAAGAGAAGGTGGTTGCCA
TAAAGAAGCAATGCTCAGAAATGTTAGAAAAGGAAAAGGTTCCCCTGAGG
GAGTTATCGAAACTAGTGGGCAGGTTGTCTGCCTCAATGCTAGCAATATT
ACCAGCAACCTTTCAATACAGGAGCCTTCAACGACAACAGATTTCAGAGT
TGAAGGAACAGGGTTCATACAATCACGTAGTGGAATTGACAGAGGAGGTG
AAAAAGGAAATAAATTGGTGGCTCTTGAACCTAGAACTTTACAATGGGAG
GAGTCTAATAACCCCACCTCCACAGATAGTAATCCAAACGGATGCCTCCA
AAACAGGATGGGGAGCTGCTTGTCGGAGTTTAAGAACAGGGGGTCCATGG
TCTCTGGAGGAACAGCAGGAACATATAAATGTTTTGGAATTAAAAGCAGC
CAGGATAGTACTATTGACATTCATACCAAGGTTCAGGGCAACGTCGGGCC
TTGAAGTATCTCCTAAAAATGGGGGGGACCAAGAGTGCCACTATGAATCA
GATAAGCAAGGAAGTCTGGGATTTTTTGATGGCAGGCAAGATCACCCTTA
CTGCCGAATTTCTCCCGGGGAAAAAGAACATAGAGGCGGACACGGAATCC
AGAAGGAAGGACTCCAGCGAATGGAAATTAAAACCATCCCTATTCAGAAG
ACTGAGTCAGGTGAGGGGCACCCCGGACATAGATCTGTTTGCATCCAGAG
TGTCGAACCAGGTTCCAGCTTATTTTTCTTGGAAAATGGATCCTTTCAGC
CAGGGGCAGGATGCCTTCCAACAGGATTGGAGAAATGTCAGAGGTTATGC
CTTTCCCCCCTTCTCCCTAATAGGAAGGGTGCTAAGGAAAATAGTATCAG
ACCAAACCATGGTTCTTCTGATAACACCAGCCTGGCAGGGGCAGCCTTGG
TATCCAATAGCACTTCAATTGTCAGTAATGAATCCAATTCTTTTACCTAT
GGAAGAAGACCTTCTGAAACATCAAGGAAAGGTTCATCCTCTAGTCTCGA
ACAGGTCCCTCAGGCTGATTGCATGGATGTTGTCAGGGAACAGCTTGCTT
CAAAAGGCGTATCAGAGAAATCTTCGGACCTTATCGTCAACTCCAGAAGA
TCAGGAACTCAATCTCATTACAAATCGGCCTGGGGAAAGTGGGCTAGCTG
GTGTATGGAACAAAAGATTGATCCCGTTCGATGTCCTGTAAAGCATATTC
TAGATTTTCTTACTGATCTGTGTACAAAGGGACTCCAATATAGTACTATA
GGTGGGTACAGATCAGCATTTCAGCTTTTCATGAAAATTGTGATGGGTCT
TCAATAGGGGAACATCCTCTTGTCAAAAGGCTGATGGTTGGTATTTTCAA
CAAGAGACCACCTCAACCTCGTTATGGATTCACTTGGGACGTTGAAACGG
TCCTTAGGTACATAAATGGTCTAGATTCTTCTACAATAGACATTAAGTTA
CTGTCATTAAAACTAACAGTACTGTTGGCCTTAACCGGGGCATCCAGGGC
TTCGGAACTTAACATTCTTGATACAAAGTTTCTATCTAAGTATTCTTCAG
TTTACATCTTTGAACTAGATGGTGTAACTAAAACACAAAAGCCTGGGGAT
TCGCCGACTAAAATAAAATTGTTCAGATTTCAGGAGAACTTATCTCTTTG
TGTGTGCCATACAATAGACGAGTTCTTGTCTAGAACTAAGGAACGAAGGG
GAACGGAAACTAGACTCCTAATATCACATATCAAACCATATAGAAGAGTT
TCTACAGACACAGTTTCAAGGTGGTTAAAAACGATAATTGGATTAGCAGG
CATTGATACTAAGATTTTTAAAGGACATTCTACAAGATCAGCGACCACTT
CTAAAGCTTCCAGTCTGGGGATCTCTGTGAGATATCATCCAGATCTTAGA
AAGAGCTACTCTCGGGTACCTAATAGCCGGGGGGATTGGAATAAGCGGGG
GGATTGGAAAAACTCTCGAAACTTAATAAGCGGGGGGGTTGGAATAAAAA
TATCCTGGGTGGAAAATTTTTGAAAAGGAGGCTAATACAGCAGAATTAGG
ACAAAAGAGGGGAACTTTCAAAAACATTTTCCCAAAAATTAATAAGCGGG
GGGGTTGGAATAAGAATGTCCTGGGTGGAAAATTTTCGAAAAATTAATNT
ATCAAACCATATAGAAGAGTTTCTACAGACACAGTTTCAAGGTGGTTAAA
AACGATAATTGGATTAGCTGGCATTGATACTAAGATTTTTAAAGGACATT
CTACAAGATCAGCGACCACTTCTAAAGCTTCCAGTCTGGGGATCTCTGTG
AGGGAGATCTTAGAAAGAGCTAATTGGACAAATGAGTCCACTTTCCAAAA
ATTTTACAACAGAAAAATTGATCCTGGTAAAGGGGAGAAATTCCAAAAGG
CCTTATTGAGTAGCTTTGAACAGGGGTAGTTTAGGACGATGTCCTAGATT
TACTATCCGAGTGAGGGCGGTAACCAATATTAGATTGGGCGGAGATTTTA
TGAAATGAAATTGAGGATTGTGCAAGGGCCCGAAGGGCCCGCAGTGCAAT
CCCGATTTTATGAATAAAATTGAAGCCAACGATCTAATATTGCCCGCCCA
CCATCTCCCTTATTGGTGTTTCATTTCATAAAATATGTTTATTTTTTCTC
TACTTGTCAGGTAATTCTGCTTTCAGAGGACGCGGACGTGGCCGAGGAAG
ATTTGGTGGATGATTGAAATATTATTTCAATGAAAGATACGATTCTTAAA
CTAAATATTGATATTGTTTCTTTCTTTCTTTATGTTTTATCCCGGACTTG
TCCTAGATTTACGATGCGAGTGAGGGCGGTAACCAATATTAGATCGTTGG
CTTCGATTTTATTCATAAAATCGGGATTGCACTGCGGGCCCTTCGGGCCC
TTGCACAATCCTCAAATGTACTTTTAGGAATGAAGAAATAATTACTGCTC
TCTTGTTCTTCAATTCACAAACCATAACATCACACGCTCCCTGAAAATGA
AAATGAGAATAATGAGACACGAGATAAATATTATCGTTTTTTTCTTCAAA
AAAGTGCAATCTTATTGTATAGATGACTTTTATGATTAGTATATGTAATC
ACATGATAACGAGTGCAATTCGAATATAATTGCACGAGTGATTTTTTTCG
AAAGGACGAGGAAAATTCGAAACAAAAAAATCACGAGTGCAATTTTCGAA
TTGTACGAGTTATTATGTGATTACGAGCTAATCGCACAA Coding sequence (CDS) from alignment at sc0000708:33488..36876- >TCONS_00028855 ID=TCONS_00028855|Name=TCONS_00028855|organism=Clytia hemisphaerica|type=CDS|length=1455bp|location=Sequence derived from alignment at sc0000708:33488..36876- (Clytia hemisphaerica)
ACAACTATTTTCCTTTTGCAAAGTCTTGGGTTTCTAATAAATGTCAAGAA
GTCAGTTTTCGAACCAACCCAAAAGATAGAATTCTTGGGGATGATAATAG
ACTCAATCAAAATGACTCTAAGCCTTCCAGAAGAGAAGGTGGTTGCCATA
AAGAAGCAATGCTCAGAAATGTTAGAAAAGGAAAAGGTTCCCCTGAGGGA
GTTATCGAAACTAGTGGGCAGGTTGTCTGCCTCAATGCTAGCAATATTAC
CAGCAACCTTTCAATACAGGAGCCTTCAACGACAACAGATTTCAGAGTTG
AAGGAACAGGGTTCATACAATCACGTAGTGGAATTGACAGAGGAGGTGAA
AAAGGAAATAAATTGGTGGCTCTTGAACCTAGAACTTTACAATGGGAGGA
GTCTAATAACCCCACCTCCACAGATAGTAATCCAAACGGATGCCTCCAAA
ACAGGATGGGGAGCTGCTTGTCGGAGTTTAAGAACAGGGGGTCCATGGTC
TCTGGAGGAACAGCAGGAACATATAAATGTTTTGGAATTAAAAGCAGCCA
GGATAGTACTATTGACATTCATACCAAGGTTCAGGGCAACGTCGGGCCTT
GAAGTATCTCCTAAAAATGGGGGGGACCAAGAGTGCCACTATGAATCAGA
TAAGCAAGGAAGTCTGGGATTTTTTGATGGCAGGCAAGATCACCCTTACT
GCCGAATTTCTCCCGGGGAAAAAGAACATAGAGGCGGACACGGAATCCAG
AAGGAAGGACTCCAGCGAATGGAAATTAAAACCATCCCTATTCAGAAGAC
TGAGTCAGGTGAGGGGCACCCCGGACATAGATCTGTTTGCATCCAGAGTG
TCGAACCAGGTTCCAGCTTATTTTTCTTGGAAAATGGATCCTTTCAGCCA
GGGGCAGGATGCCTTCCAACAGGATTGGAGAAATGTCAGAGGTTATGCCT
TTCCCCCCTTCTCCCTAATAGGAAGGGTGCTAAGGAAAATAGTATCAGAC
CAAACCATGGTTCTTCTGATAACACCAGCCTGGCAGGGGCAGCCTTGGTA
TCCAATAGCACTTCAATTGTCAGTAATGAATCCAATTCTTTTACCTATGG
AAGAAGACCTTCTGAAACATCAAGGAAAGGTTCATCCTCTAGTCTCGAAC
AGGTCCCTCAGGCTGATTGCATGGATGTTGTCAGGGAACAGCTTGCTTCA
AAAGGCGTATCAGAGAAATCTTCGGACCTTATCGTCAACTCCAGAAGATC
AGGAACTCAATCTCATTACAAATCGGCCTGGGGAAAGTGGGCTAGCTGGT
GTATGGAACAAAAGATTGATCCCGTTCGATGTCCTGTAAAGCATATTCTA
GATTTTCTTACTGATCTGTGTACAAAGGGACTCCAATATAGTACTATAGG
TGGGTACAGATCAGCATTTCAGCTTTTCATGAAAATTGTGATGGGTCTTC
AATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028855-exon-sc0000708-1575043694:34536..36876 | TCONS_00028855-exon-sc0000708-1575043694:34536..36876 | Clytia hemisphaerica | exon |
| TCONS_00028855-exon-sc0000708-1575043694:33488..34066 | TCONS_00028855-exon-sc0000708-1575043694:33488..34066 | Clytia hemisphaerica | exon |
| TCONS_00028855-exon-sc0000708-1510915933:34536..36876 | TCONS_00028855-exon-sc0000708-1510915933:34536..36876 | Clytia hemisphaerica | exon |
| TCONS_00028855-exon-sc0000708-1510915933:33488..34066 | TCONS_00028855-exon-sc0000708-1510915933:33488..34066 | Clytia hemisphaerica | exon |
| TCONS_00028855-exon-sc0000708-1491911889:34536..36876 | TCONS_00028855-exon-sc0000708-1491911889:34536..36876 | Clytia hemisphaerica | exon |
| TCONS_00028855-exon-sc0000708-1491911889:33488..34066 | TCONS_00028855-exon-sc0000708-1491911889:33488..34066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:33488..36876 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023109 | Integrase_recombinase_N |
| IPR010998 | Integrase_Lambda-type_N |
Blast
The following BLAST results are available for this feature:
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