TCONS_00028842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028842
Unique NameTCONS_00028842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028842 ID=TCONS_00028842|Name=TCONS_00028842|organism=Clytia hemisphaerica|type=transcript|length=4130bp
CaacaacttttttatcaacAGAATACAGCAATACAAGAAAATGACTCATC
TTCTTCTTCctcgtcatcatcatcatcatcatcatcatccggTGAAGAAA
GCGAGTCTGTGgaTAAATCGTCTTTCTCAACCTGGAGaaaTGATGGATTT
GCAGAAACATTATTTGAAGAGTTAAAAGAGCAAGGCAATGCGCAAACCTA
CGAAGTCTTCATGCTAGGTCTTATAAAGCATGGAGAATACATACGGGCCT
TCCATTTGTTCAAAGAATTCCAAGACAAGGGATTTTCAGGTTCATTACAT
TTGTACGAGACTTTGATCAAACACGTTGTGGACGTAAGACAAGGAGACCA
GGACAGATGGGAATTTGTTGAGGAAATCGTTGCTTCAATGAAAGTAAAAC
CAACATCAGCAACATTCGCGACGTTGATGTCAGTAGCCATTCAACAAGAA
AGTGGTGTTTCCAAATTATGCCAGCGACTCTTTGGTGAAATGAAAAAGCT
AAATATTACTCCGTCCCTCGGTACATTATATCATCTGTTAGCTGGTGAAA
GAAAAGAATTCGAAACTCAGAAGAATTacattcaaaacattcgaattctt
taCATGTGTGTCGATGAACTACAATCAGGGAGCGTTGACCTACAACTCAC
TCATCCCTCAGACGTGGAATTCTTTGAAATGGCAATGCATTTGGCACGCT
TTAAGAGAGTTGGTGAAGTAGCTGAAAAGATCTTCAACGTCATCACCCAA
AGCAACCTCCACCATATGTTAGGTGTACGAGCCAAACAATTCTAtGGTAA
TTTCCTTGCTGCAATCGCTAGAAGTCCCAAAGACATGGAAAGTGTATACA
AGCATTACGAGACCATTGTACCAAatTATCTTATACCACACGATTGGGTG
TACGAGCAGTTGTTCTTTGCATCGCGCAACAACCAAGACATCTCCTACGT
TCCACGCTTCTACAACGataTGTCAAAATACAACGTGTACCTTATGAACA
AGAAGCTTTTACCGGCTTTGTACTTGGCTCTTGACATGCCCATACCTCAG
GAGAATGCAGCAGAGTTTTTGGGCATTGTTGAGGGTTCAAAGTATGCCAT
AGAGAATATAGACGTTACGGACGAAGTTCGACAAAACATGATTTCAACTG
CAATGAACATTTACTGTCTCAACGGCAAACCTCATGAAGccatAGAGGTT
GCAAAATACCACAAGTTATTGGGAACAATGCCAACGTTTAAATccttgtt
gaaaattttaacagTCAATATTTCACAAGAAGATAAAAAGTCTGCAATGC
AAACGTTGAAACTTATGTCTTCGATGAGTTTCCAATATGACGATTTACTG
GACGAGACGATCAATAAGAGCTTCCTCCAAAGTGAAAGggaGCGTGTGAT
GTTATGGTTTGTGAATTGAAGAACAAGAGAGCAGTAATTATTTCTTCATT
CCTAAAAGTACAATcctcaatttcatttcataaaatCTCCGCCCAATCTA
ATATTGGTTACCGCCCTCACTCGGATAGTAAATCTAGGACATCGTCCTAA
ACTACCCCTGTTCAAAGCTACTCAATAAGGCCTTTTGGAATTTCTCCCCT
TTACCAGGATCAATTTTTCTGTTgtaaaatttttggaaagtggACTCATT
TGTCCAATTAGCTCTTTCTAAGATCTCCCTCACAGAGATCCCCAGACTGG
AAGCTTTAGAAGTGGTCGCTGATCTTGTAGAATGTCCTTTAAAAATCTTA
GTATCAATGCCAGCTAATCCAATTATCGTTTTTAACCACCTTGAAACTGT
GTCTGTAGAAACTCTTCTATATGGTTTGATANattaatttttcgaaaatt
ttccacccaggacattcttattccaacccccccgcttattaatttttggg
aaaatgtttttgaaagttcccctcttttgtcctaattctgctgtattagc
ctccttttcaaaaattttccacccaggatatttttattccaacccccccg
cttattaagtttcgagagtttttccaatccccccgcttattccaatcccc
ccggctattaggtacccgagagtagctcTTTCTAAGATCTGGATGATATC
TCACAGAGATCCCCAGACTGGAAGCTTTAGAAGTGGTCGCTGATCTTGTA
GAATGTCCTTTAAAAATCTTAGTATCAATGCCTGCTAATCCAATTATCGT
TTTTAACCACCTTGAAACTGTGTCTGTAGAAACTCTTCTATATGGTTTGA
TATGTGATATTAGGAGTCTAGTTTCCGTTCCCCTTCGTTCCTTAGTTCTA
GACAAGAACTCGTCTATTGTATGGCACACACAAAGAGATAAGTTCTCCTG
AAATCTGAACAATTTTATTTTAGTCGGCGAATCCCCAGGCTTTTGTGTTT
TAGTTACACCATCTAGTTCAAAGATGTAAACTGAAGAATACTTAGATAGA
AACTTTGTATCAAGAATGTTAAGTTCCGAAGCCCTGGATGCCCCGGTTAA
GGCCAACAGTACTGTTAGTTTTAATGACAGTAACTTAATGTCTATTGTAG
AAGAATCTAGACCATTTATGTACCTAAGGACCGTTTCAACGTCCCAAGTG
AATCCATAACGAGGTTGAGGTGGTCTCTTGTTGAAAATACCAACCATCAG
CCTTTTGACAAGAGGATGTTCCCCTATTGAAGACCCATCACAATTTTCAT
GAAAAGCTGAAATGCTGATCTGTACCCACCTATAGTACTATATTGGAGTC
CCTTTGTACACAGATCAGTAAGAAAATCTAGAATATGCTTTACAGGACAT
CGAACGGGATCAATCTTTTGTTCCATACACCAGCTAGCCCACTTTCCCCA
GGCCGATTTGTAATGAGATTGAGTTCCTGATCTTCTGGAGTTGACGATAA
GGTCCGAAGATTTCTCTGATACGCCTTTTGAAGCAAGCTGTTCCCTGACA
ACATCCATGCAATCAGCCTGAGGGACCTGTTCGAGACTAGAGGATGAACC
TTTCCTTGATGTTTCAGAAGGTCTTCTTCCATAGGTAAAAGAATTGGATT
CATTACTGACAATTGAAGTGCTATTGGATACCAAGGCTGCCCCTGCCAGG
CTGGTGTTATCAGAAGAACCATGGTTTGGTCTGATACTATTTTCCTTAGC
ACCCTTCCTATTAGGGAGAAGGGGGGAAAGGCATAACCTCTGACATTTCT
CCAATCCTGTTGGAAGGCATCCTGCCCCTGGCTGAAAGGAtccattttcc
aagaaaaataaGCTGGAACCTGGTTCGACACTCTGGATGCAAACAGATCT
ATGTCCGGGGTGCCCCTCACCTGACTCAGTCTTCTGAATAGGGATGGTTT
TAATTTCCATTCGCTGGAGTCCTTCCTTCTGGATTCCGTGTCCGCCTCTA
TGTTCTTTTTCCCCGGGAGAAATTCGGCAGTAAGGGTGATCTTGCCTGCC
ATCAAAAAATCCCAGACTTCCTTGCTTATCTGATTCATAGTGGCACTCTT
GGTCCCCCCCATTTTTAGGAGATACTTCAAGGCCCGACGTTGCCCTGAAC
CTTGGTATGAATGTCAATAGTACTATCCTGGCTGCTTTTAATTCCAAAAC
ATTTATATGTTCCTGCTGTTCCTCCAGAGACCATGGACCCCCTGTTCTTA
AACTCCGACAAGCAGCTCCCCATCCTGTTTTGGAGGCATCCGTTTGGATT
ACTATCTGTGGAGGTGGGGTTATTAGACTCCTCCCATTGTAAAGTTCTAG
GTTCAAGAGCCACCaatttatttcctttttcaCCTCCTCTGTCAATTCCA
CTACGTGATTGTATGAACCCTGTTCCTTCAACTCTGAAATCTGTTGTCGT
TGAAGGCTCCTGTATTGAAAGGTTGCTGGTAATATTGCTAGCATTGAGGC
AGACAACCTGCCCACTAGTTTCGATAACTCCCTCAGGGGAACCTTTTCCT
TTTCTAACATTTCTGAGCATTGCTTCTTTATGGCAACCACCTTCTCTTCT
GGAAGGCTTAGAGTCATTTTGATTGAGTCTATTATCATCCCCAAGAATTC
TATCTTTTGGGTTGGTTCGAAAACTGACTTCTTGACATTTATTAGAAACC
CAAGACTTTGCAAAAGGAAAATAGTTGTGT
Run BLAST on NCBI

transcript from alignment at sc0000708:25467..36876+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028842 ID=TCONS_00028842|Name=TCONS_00028842|organism=Clytia hemisphaerica|type=transcript|length=11410bp|location=Sequence derived from alignment at sc0000708:25467..36876+ (Clytia hemisphaerica)
CaacaacttttttatcaacAGAATACAGCAATACAAGAAAATGACTCATC
TTCTTCTTCctcgtcatcatcatcatcatcatcatcatccggTGAAGAAA
GCGAGTCTGTGgtatgtcgtcaaaaataccaAGTTGAAGATTTTCTTCAC
TCTTACAATACAGCTTGAAGACTAGGGACTTTATTTTAATAGAATCTTGA
AAAGTCTTATCTATCTTTCATCTATCTCATCTCTAACAGTTGacactttg
aaataaaaatgcaaATAATTTGCTGACATTTTTTGCAGCCTGAATTGATT
accaactttttatttttttattgttttaggaTAAATCGTCTTTCTCAACC
TGGAGGTATGATATACaacattgaaaattaaatttcatacagtttttttt
ttcattatttctttttacctttttagCTGTATAGGTTTGTAAAAATATTC
TCAGAATATTCTCAAAGTTGTCTTTGAATAATACAGTCGTGATATTTTGG
TAGTCAATGTAAATTTcacaatcaattttttttttcacagaaaTGATGGA
TTTGCAGAAACATTATTTGAAGAGTTAAAAGAGCAAGGCAATGCGCAAAC
CTACGAAGTCTTCATGCTAGGTCTTATAAAGGTACATTGTATCCTATTTC
ACCTGAGTATTGTACTGTCTATATGTATGTCTTTTGGTGTCTTCCTAACT
AGTCCATCAGCAAAACGTCCTCATATATTTCCTTGGGACTTCAAAAAGAG
TTTTTACCTGGCTGGCAAAGCTCGAAAATCTTTCTATGAAGCTTGAAGGG
TTTAGAGGCTCTAAGAGACTcgacaaattcaattttcacagatatgagtt
tttataagatactttaataatcggtcatttgaagtaataaaaatgacgcg
ttctttagaaaaagtaacaaaattgttttattactggctaacgaccaacc
aaataaaataataagagcttgtaaaaacacCATCATCTCGTCccaatttt
tgaagatttcaaatACTTCAAGATATAGCCATGGAAATCCTCTAAACTAT
ACCTCTAACTGCTAGTAATCTTAGAGACGCATCTGCTCTGATCTGCTGAA
TGTAATCtttataatgagaaaataaagtctgttatattttattctttaaa
aaaggGTCACTGAAGACCACTCCCGCTCTTCTTTGTTGAAGTGTTTACAT
TATATTTACTTTTAATTCTTTCAGCATGGAGAATACATACGGGCCTTCCA
TTTGTTCAAAGAATTCCAAGACAAGGGATTTTCAGGTGAcgattcagcaa
aaattcaattaatttttacGTACTTGCAAAAGACTTTATGCCTAAACTAA
TCTATAACGCCcatctttttttctatttgataaTATTCTTTTCGTTAATA
TCTTATATATCTCAAAGAGCACATGCATTTTAAACTAATTCAACTTTAAT
CAAAAGTGGCAGGCCTTTTTTGCTTTCATTGCAGATTCATTTGAGACTag
aattaaattatttttttcacatttttgccGAGATAAAATGCGAAAGATTC
GAAGCAGTACAAACTCCCATGTACATAGGATTtcaattttaggtttttgt
taattttttcctGAAGGTTCATTACATTTGTACGAGACTTTGATCAAACA
CGTTGTGGACGTAAGACAAGGAGACCAGGACAGATGGGAATTTGTTGAGG
TATTTGAATCATCTGTATTCGTTTTGAAAACGACCTGATACATTATATTA
TCATAAAATTTATTTCCGAACAGTATGGAGAAAATGTTTTACCTTAAACC
CACACATAATGAGcttcaaaaaaacataaaacctatgttccatttttttt
attatttgttttaacTGTTTATGCTGATTGTACCTCAAGAGATTTCTTGC
TCAAATTATTTCTCATTATCTTTTACCAGGAAATCGTTGCTTCAATGAAA
GTAAAACCAACATCAGGTTAATTAATTTCATATTATTATTAGTAACTACG
ATTTTTCGCTATCCTTTGAATATGAAATGCAAGGGTTTTGCTGAGAGTTT
AGCATTCATTGTGTAAGGTTTTACCGTGACTTGTTGCTCCTTTAACTAAG
TGTCCATCAACGGCTCAGACTCAGCTTATGTTtaacattctattgttctc
aaataaTAAACCCATTCATAGGTTCAGCCCCcccttacttttttttttgg
ggggggctaagaaatattttggcctttaaagagcctgggggctaaaatta
ccaaaatatttgggggggacctagattgttggggggagcctagatgatct
gactgagactctgggggctgttcagctaaattcaaaagatctcttatctt
actattaaatcaaatataaaaagcaaaagatttgtaagcataaatattaa
aacaagtaaaatttagttttcatttatcagtactgtactcgcatatattt
tttattgacttctctctacgggggtgggagaacaatgtttttgtttttgt
ttttgtttatcttgggacctgaagtattaggggacctagcacaagacaat
tttttggggggagctaaattgttggggggaccttactttgttgcggggag
ctagaaacctggctgaagctatgccCATTTTTTTAAACCTAGTTCTGAGC
CTATCGGCGCCCGTTATgttcacaaaagaaaaacatgtattgtataaaat
ctattttttctaGCAACATTCGCGACGTTGATGTCAGTAGCCATTCAACA
AGAAAGTGGTGTTTCCAAATTATGCCAGCGACTCTTTGGTGAAATGAAAA
AGCTAAATATTAGTAAGTTGTAACTTAGTTTCTTGAAGTGTAAGGAAAAT
ATTAGGTATTGCTTTATTTGTGCCAAAACTAAAGCTGTGAGGTCAGCACT
ATTTCAAGATAATAATTTTTAAGAGACCTCATAGACTATGCTTCTTTGTA
GCCTTAAAAGTTTAGTTCAAATTGTTTTGGAATAAAGagcttttttcctc
attttttacaaaatcttgAACTGAAAACCTGAGCATCCTTCATGATGTAA
GTTGTGGGTCATTTACTTTTGAACCCTTTGATTACTCAGGCTTACTTTCA
GATTTCCATCCAATATAAAATTTGGAGATTCTGGGTGTTATGTCCATTAA
GCTTGGGGAGCCAAAAACGTCAACAATGGACCGTAAGCTCGTGTCGACTA
CTTTGATATGATAACTAATTTGATGTTCTAAAAAATCTTTCAGCTCCGTC
CCTCGGTACATTATATCATCTGTTAGCTGGTGAAAGAAAAGAATTCGAAA
CTCAGAAGAGTAAGGACATACTTTCGGATTTGTATTTTTGTTCTAGTATA
TAACATTTCTCCTAGAAGAATTAGGTCTTAATAGGATTGTATACCCAATA
TATAGAAAGTTGGTTTCTGCTCCTTATTTTGTCTGTTTGTATCAATGACC
TTTCATTGTTTGAAGAACTGTTCTGTCTTTTCTAACTTGTAGTCACAATA
ACGAGCCTTAAGATCAGTTTATTACCATACAATATGTCCAGGGCTAGTTA
CAACACTGACATTTCGTTTTGTGTATTTCTCCAGATTacattcaaaacat
tcgaattctttaCATGTGTGTCGATGAACTACAATCAGGGAGCGTTGACC
TACAACTCACTCATCCCTCAGACGGTAAGTTTGCCCTTAATTTACATTAT
CTTGGCTCCAATAGTTGGTAAATCCTGCACCATTTACGAGAGATcgcaaa
agaagaaaatattatCACGATTATACGATTCTTTTGTCTTACAGAATAAT
TGTTAAAAGAGAAATTTCCTGCTATTTACTTACGCAACCTTTTAAACAAA
ATGAAACAACAAACTCAACCCTGCTCGCACCTCATATGcaaaagatttga
aagaaatctaaTTCATTTATGCAAAAGTTTGGCTCCTTTTATCCAAAGTA
ATACTTAAAACCattgactttttcttttatttcacgAACTTTTCTTTCGT
TTCATTTTCAGTGGAATTCTTTGAAATGGCAATGCATTTGGTATGAGTTT
ATATAAACTATTAATTCGATCAACTACAACATATTGACTATACCTTAGTA
GTTTGATCTTGTTTGAAAAGTTTATCATTATCTTATTTATATAAAGAACA
ATCTCTAATTGCGCTTTGTATCAATTTGATCGTAATTTAATTCGTTAGTT
CAAATGATGGATTTTTCTGCTTTTCTTTGATTCTAGGCACGCTTTAAGAG
AGTTGGTGAAGTAGCTGAAAAGATCTTCAACGTCATCACCCAAAGCAACC
TCCACCATATGTTAGGTGTACGAGCCAAACAATTCTAGTAAGTACCATTC
TTTGGTTTTacgtaaaaatgtaaaaatgttaaaacttcCTCCGCCCCAGA
CGGATTTCTGTCCATACAGGatggggggtggacgaaccttttcaagccaT
AAAACATTTTAAGGGAATGTGTGGATAACCCCTGGAAAAAGTtaaaaccc
ttggaaaaattccttTCTTACACCTTAAAGTTACGGTGGACGAATTTTTT
ACTcactgggaaaatgaaaaaatactctttttccttcaaattctGCTCGA
ATATagcccctgtatggatataaaatagaATGGCCTATTATTTGGTGTCA
TCGTTTGTTTAGACAAAACTTGTGTCTTCCGATAGAACATTTATAATTCT
TcttttatgaatttttagtGGTAATTTCCTTGCTGCAATCGCTAGAAGTC
CCAAAGACATGGAAAGTGTATACAAGCATTACGAGACCATTGTACCAAat
gtaatgtttatttttgccaATAATTTTTATTGAACCCTCCGCTCGAGGCT
AAATTAAATTTGGATAACTTGATTGATCGAAATTGGAAAACTAGTGTTGT
ATATCCTAAGTCATTGCGTTTAGCCTTTTCTAATCAACATTATAAGCACA
CTTTAAGAATTGCCGAAAACCACCACTAGTACCTCTATCTTTCCTTTCAG
AATTCGACTAGAATAAATATGAGGACATAGATTTAGTCctcaatcaaatt
ttaatggGCTCTTCTAGGAGTTGAGTGTATATTATTTTTCCAATAATCTA
CCCCTAGATATAtcgatttttaaccccctggacacgtaTTTTACCCCCTG
AACTAGCATCAACTCAACCCCCTTGACATCGCAAATTTATGAGggttttt
caatacccctggacaatatctTTTACTTCCTATGTTTGGTTTCTCAGTAC
TCAACATTCATTCCATCAATGTCTTTTACTCGCAGTATCTTATACCACAC
GATTGGGTGTACGAGCAGTTGTTCTTTGCATCGCGCAACAACCAAGACAT
CTCCTACGTTCCACGCTTCTACAACGGTATGTAAATTACTAGATTAGATT
CTTTACTTTTAAGAAAGGCCCAGCGGTTTGCGTTTCGCCGTCATAAGGGG
TTTTATTGTGGGATGGcgttgtttaaattttttttgttgtaaTGGTGCGA
TCAAGGTTTCGGCGTAATTCGTGATAGGGCATTGATCAGAGTCGTGATGT
GTGATTTAGGCTATGTTTCACATGATGAACCGATTTCGGCAATTTCCGTA
ATTGTTGCGAGATCAAAAGATTTGGCGTGATGTAGGGTTGCGCTGGGAGG
GATGGTTTAGTAGTTTAAGTCGATAGTATCCTGTAATTATCTTCATCTGA
AAAAGTGATCGAGACTTTACAGAATCAAAACAAGCTTTTGTTCTAAACAT
CTACACCTTTGTTTTTATAGATCCTCTTacattttccatatttttcctTG
GTTTGATTTTATGCTCTaacgaaatttatttttttatagataTGTCAAAA
TACAACGTGTACCTTATGAACAAGAAGCTTTTACCGGCTTTGTACTTGGC
TCTTGACATGCCCATACCTCAGGAGGTATGTATAAATATAGTTAACAGCG
TTATTCTTTCTCTTTGTGTCTAATACTATTTAGGGATACGTAATAGAGAA
CAGATTACCGGTGTTAGGAATTTCTCCGATAAGACATTATTGAGAtagtt
ttttgtaaattttcatatACTTACAAATAGAGTTTTGGACTGAATTAAAT
GCAAATTAAGTGCTTAAAGGCGATCCATCTTCCAATCGCtcaataaaaat
gttttctttttgtatttattagAATGCAGCAGAGTTTTTGGGCATTGTTG
AGGGTTCAAAGTATGCCATAGAGAATATAGACGTTACGTAAGTTTAACTT
TACATttttcttgataatttttttttacaaaactaAAAGGGGTGTTTTTT
ATCAGATATAGGCTCAGCCTTACACTCTTACTGGCTATTTAGAATTAACA
AAATAACTTTTATTACAATGActgtacaaaatatttttaaaaatcttctt
tgaaatttatttcaGGGACGAAGTTCGACAAAACATGATTTCAACTGCAA
TGAACATTTACTGTCTCAACGGCAAACCTCATGAAGccatgtaaaagatt
tttttctcctccGTATGCTAAACGGAATCAATAAACTCATACatgttttc
ttataagcatgccgcttataagcatatgaaggttcagatttgcagattat
ctaagcataacataagcatatgtCAGCTTGTAATATTTTGGAAGTTggac
aagtaaaaaaaacattccacagctagccacattccactgctccaaAAATC
TGAAGAAATTTTTACAAGATTTCTAAGATTTCACAAAAACTTAGCTCGTG
TTCACCACATAAGCATTATACTTACTTAAACCATCAATATTTTCTCGTTA
CAGAGAGGTTGCAAAATACCACAAGTTATTGGGAACAATGCCAACGTAAG
CTTGAATACTTTTATACCATTTACTCAGGGAAATTTTTGGAGGAGGGGAT
CCTCGTCATTGTTTATTGctaatcaaataataaaggttgtAATTTGTGAA
AATTCCAATACCTGCTCTGAAAATTCTCCTTGTGAATGGCTTTGAAATAG
AAAGCATAATAATATTAAAATACTCTAACAATTTAGTTCGAAAGTTTATT
GCTACTTTTTCAGGTTTAAATccttgttgaaaattttaacagTCAATATT
TCACAAGAAGATAAAAAGTCTGCAATGGTatgttggaattttttttttct
acctAAGCTCGATCTTCACATTTTTACTGTCTTAAAGGTTACTTACTAAA
TTATAAGCTGGTCATGATACGCAATGCACACCAATTGCTAAACTATTTTA
GCTGGCAACTTTGAAAttgattcaaatatttttgtatcTTCTACACTATA
CAGCAAACGTTGAAACTTATGTCTTCGATGAGTTTCCAATATGACGATTT
ACTGGACGAGACGATCAATAAGAGCTTCCTCCAAAGTGAAAGGTAGTTTA
TCGATCTTCTTCTGTAAAGAAATATTGATCgttttttaaacctaaaaacA
TACAGTCAGGGCGATTAAAGAGGGCCAATAGTAATAATGATGACAAATAA
CGGTCATCagattatcaaaaagtgaagaaaacaGCTTTTCAATACAATAA
TTACCATCCAAACAAGGGAATTTAAGaaataatcgcacgatgggttattt
tttcttatttggcacgccctcaaagagagcaattaatcgttaattacatc
ctgtagagagcaattaatcgttaatcacactctccaatgccgcgccaatg
tttacaaaattgattttgatgttttttcttaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTAGTGAAagtcattgtgcgattagctcgtaatcacataata
actcgtacaattcgaaaattgcactcgtgatttttttgtttcgaattttc
ctcgtcctttcgaaaaaaatcactcgtgcaattatattcgaattgcactc
gttatcatgtgattacatatactaatcatAAAAGTCATCTATACAATAAG
ATTGcacttttttgaagaaaaaaacgatAATATTTATCTCGTGTCTCATT
attctcattttcattttcagggaGCGTGTGATGTTATGGTTTGTGAATTG
AAGAACAAGAGAGCAGTAATTATTTCTTCATTCCTAAAAGTACATTTGAG
GATTGTGCAAGGGCCCGAAGGGCCCGCAGTGCAATCCcgattttatgaat
aaaatcgAAGCCAACGATCTAATATTGGTTACCGCCCTCACTCGCATCGT
AAATCTAGGACAAGTCCGGGATAAAacataaagaaagaaagaaacaataT
CAATATTTAGTTTAAGAATCGTATCTTTCATTGAAATAATATTTCAATCA
TCCACCAAATCTTCCTCGGCCACGTCCGCGTCCTCTGAAAGCAGAATTAC
CTGACAAGTAGAgaaaaaataaacatattttATGAAATGAAACACCAATA
AGGGAGATGGTGGGCGGGCAATATTAGATCGTTGGCTTcaattttattca
taaaatcgGGATTGCACTGCGGGCCCTTCGGGCCCTTGCACAATcctcaa
tttcatttcataaaatCTCCGCCCAATCTAATATTGGTTACCGCCCTCAC
TCGGATAGTAAATCTAGGACATCGTCCTAAACTACCCCTGTTCAAAGCTA
CTCAATAAGGCCTTTTGGAATTTCTCCCCTTTACCAGGATCAATTTTTCT
GTTgtaaaatttttggaaagtggACTCATTTGTCCAATTAGCTCTTTCTA
AGATCTCCCTCACAGAGATCCCCAGACTGGAAGCTTTAGAAGTGGTCGCT
GATCTTGTAGAATGTCCTTTAAAAATCTTAGTATCAATGCCAGCTAATCC
AATTATCGTTTTTAACCACCTTGAAACTGTGTCTGTAGAAACTCTTCTAT
ATGGTTTGATANattaatttttcgaaaattttccacccaggacattctta
ttccaacccccccgcttattaatttttgggaaaatgtttttgaaagttcc
cctcttttgtcctaattctgctgtattagcctccttttcaaaaattttcc
acccaggatatttttattccaacccccccgcttattaagtttcgagagtt
tttccaatccccccgcttattccaatccccccggctattaggtacccgag
agtagctcTTTCTAAGATCTGGATGATATCTCACAGAGATCCCCAGACTG
GAAGCTTTAGAAGTGGTCGCTGATCTTGTAGAATGTCCTTTAAAAATCTT
AGTATCAATGCCTGCTAATCCAATTATCGTTTTTAACCACCTTGAAACTG
TGTCTGTAGAAACTCTTCTATATGGTTTGATATGTGATATTAGGAGTCTA
GTTTCCGTTCCCCTTCGTTCCTTAGTTCTAGACAAGAACTCGTCTATTGT
ATGGCACACACAAAGAGATAAGTTCTCCTGAAATCTGAACAATTTTATTT
TAGTCGGCGAATCCCCAGGCTTTTGTGTTTTAGTTACACCATCTAGTTCA
AAGATGTAAACTGAAGAATACTTAGATAGAAACTTTGTATCAAGAATGTT
AAGTTCCGAAGCCCTGGATGCCCCGGTTAAGGCCAACAGTACTGTTAGTT
TTAATGACAGTAACTTAATGTCTATTGTAGAAGAATCTAGACCATTTATG
TACCTAAGGACCGTTTCAACGTCCCAAGTGAATCCATAACGAGGTTGAGG
TGGTCTCTTGTTGAAAATACCAACCATCAGCCTTTTGACAAGAGGATGTT
CCCCTATTGAAGACCCATCACAATTTTCATGAAAAGCTGAAATGCTGATC
TGTACCCACCTATAGTACTATATTGGAGTCCCTTTGTACACAGATCAGTA
AGAAAATCTAGAATATGCTTTACAGGACATCGAACGGGATCAATCTTTTG
TTCCATACACCAGCTAGCCCACTTTCCCCAGGCCGATTTGTAATGAGATT
GAGTTCCTGATCTTCTGGAGTTGACGATAAGGTCCGAAGATTTCTCTGAT
ACGCCTTTTGAAGCAAGCTGTTCCCTGACAACATCCATGCAATCAGCCTG
AGGGACCTGTTCGAGACTAGAGGATGAACCTTTCCTTGATGTTTCAGAAG
GTCTTCTTCCATAGGTAAAAGAATTGGATTCATTACTGACAATTGAAGTG
CTATTGGATACCAAGGCTGCCCCTGCCAGGCTGGTGTTATCAGAAGAACC
ATGGTTTGGTCTGATACTATTTTCCTTAGCACCCTTCCTATTAGGGAGAA
GGGGGGAAAGGCATAACCTCTGACATTTCTCCAATCCTGTTGGAAGGCAT
CCTGCCCCTGGCTGAAAGGAtccattttccaagaaaaataaGCTGGAACC
TGGTTCGACACTCTGGATGCAAACAGATCTATGTCCGGGGTGCCCCTCAC
CTGACTCAGTCTTCTGAATAGGGATGGTTTTAATTTCCATTCGCTGGAGT
CCTTCCTTCTGGATTCCGTGTCCGCCTCTATGTTCTTTTTCCCCGGGAGA
AATTCGGCAGTAAGGGTGATCTTGCCTGCCATCAAAAAATCCCAGACTTC
CTTGCTTATCTGATTCATAGTGGCACTCTTGGTCCCCCCCATTTTTAGGA
GATACTTCAAGGCCCGACGTTGCCCTGAACCTTGGTATGAATGTCAATAG
TACTATCCTGGCTGCTTTTAATTCCAAAACATTTATATGTTCCTGCTGTT
CCTCCAGAGACCATGGACCCCCTGTTCTTAAACTCCGACAAGCAGCTCCC
CATCCTGTTTTGGAGGCATCCGTTTGGATTACTATCTGTGGAGGTGGGGT
TATTAGACTCCTCCCATTGTAAAGTTCTAGGTTCAAGAGCCACCaattta
tttcctttttcaCCTCCTCTGTCAATTCCACTACGTGATTGTATGAACCC
TGTTCCTTCAACTCTGAAATCTGTTGTCGTTGAAGGCTCCTGTATTGAAA
GGTTGCTGGTAATATTGCTAGCATTGAGGCAGACAACCTGCCCACTAGTT
TCGATAACTCCCTCAGGGGAACCTTTTCCTTTTCTAACATTTCTGAGCAT
TGCTTCTTTATGGCAACCACCTTCTCTTCTGGAAGGCTTAGAGTCATTTT
GATTGAGTCTATTATCATCCCCAAGAATTCTATCTTTTGGGTTGGTTCGA
AAACTGACTTCTTGACATTTATTAGAAACCCAAGACTTTGCAAAAGGAAA
ATAGTTGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016368XLOC_016368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028842-exon-sc0000708-1491911889:25467..25577TCONS_00028842-exon-sc0000708-1491911889:25467..25577Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:25467..25577TCONS_00028842-exon-sc0000708-1510915933:25467..25577Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:25467..25577TCONS_00028842-exon-sc0000708-1575043694:25467..25577Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:25796..25821TCONS_00028842-exon-sc0000708-1491911889:25796..25821Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:25796..25821TCONS_00028842-exon-sc0000708-1510915933:25796..25821Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:25796..25821TCONS_00028842-exon-sc0000708-1575043694:25796..25821Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:26007..26097TCONS_00028842-exon-sc0000708-1491911889:26007..26097Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:26007..26097TCONS_00028842-exon-sc0000708-1510915933:26007..26097Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:26007..26097TCONS_00028842-exon-sc0000708-1575043694:26007..26097Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:26691..26751TCONS_00028842-exon-sc0000708-1491911889:26691..26751Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:26691..26751TCONS_00028842-exon-sc0000708-1510915933:26691..26751Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:26691..26751TCONS_00028842-exon-sc0000708-1575043694:26691..26751Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:27083..27165TCONS_00028842-exon-sc0000708-1491911889:27083..27165Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:27083..27165TCONS_00028842-exon-sc0000708-1510915933:27083..27165Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:27083..27165TCONS_00028842-exon-sc0000708-1575043694:27083..27165Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:27396..27432TCONS_00028842-exon-sc0000708-1491911889:27396..27432Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:27396..27432TCONS_00028842-exon-sc0000708-1510915933:27396..27432Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:27396..27432TCONS_00028842-exon-sc0000708-1575043694:27396..27432Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:28180..28278TCONS_00028842-exon-sc0000708-1491911889:28180..28278Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:28180..28278TCONS_00028842-exon-sc0000708-1510915933:28180..28278Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:28180..28278TCONS_00028842-exon-sc0000708-1575043694:28180..28278Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:28710..28775TCONS_00028842-exon-sc0000708-1491911889:28710..28775Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:28710..28775TCONS_00028842-exon-sc0000708-1510915933:28710..28775Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:28710..28775TCONS_00028842-exon-sc0000708-1575043694:28710..28775Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:29051..29140TCONS_00028842-exon-sc0000708-1491911889:29051..29140Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:29051..29140TCONS_00028842-exon-sc0000708-1510915933:29051..29140Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:29051..29140TCONS_00028842-exon-sc0000708-1575043694:29051..29140Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:29478..29506TCONS_00028842-exon-sc0000708-1491911889:29478..29506Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:29478..29506TCONS_00028842-exon-sc0000708-1510915933:29478..29506Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:29478..29506TCONS_00028842-exon-sc0000708-1575043694:29478..29506Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:29703..29803TCONS_00028842-exon-sc0000708-1491911889:29703..29803Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:29703..29803TCONS_00028842-exon-sc0000708-1510915933:29703..29803Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:29703..29803TCONS_00028842-exon-sc0000708-1575043694:29703..29803Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:30185..30266TCONS_00028842-exon-sc0000708-1491911889:30185..30266Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:30185..30266TCONS_00028842-exon-sc0000708-1510915933:30185..30266Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:30185..30266TCONS_00028842-exon-sc0000708-1575043694:30185..30266Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:30752..30842TCONS_00028842-exon-sc0000708-1491911889:30752..30842Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:30752..30842TCONS_00028842-exon-sc0000708-1510915933:30752..30842Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:30752..30842TCONS_00028842-exon-sc0000708-1575043694:30752..30842Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:31306..31391TCONS_00028842-exon-sc0000708-1491911889:31306..31391Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:31306..31391TCONS_00028842-exon-sc0000708-1510915933:31306..31391Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:31306..31391TCONS_00028842-exon-sc0000708-1575043694:31306..31391Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:31639..31703TCONS_00028842-exon-sc0000708-1491911889:31639..31703Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:31639..31703TCONS_00028842-exon-sc0000708-1510915933:31639..31703Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:31639..31703TCONS_00028842-exon-sc0000708-1575043694:31639..31703Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:31882..31956TCONS_00028842-exon-sc0000708-1491911889:31882..31956Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:31882..31956TCONS_00028842-exon-sc0000708-1510915933:31882..31956Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:31882..31956TCONS_00028842-exon-sc0000708-1575043694:31882..31956Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:32270..32311TCONS_00028842-exon-sc0000708-1491911889:32270..32311Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:32270..32311TCONS_00028842-exon-sc0000708-1510915933:32270..32311Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:32270..32311TCONS_00028842-exon-sc0000708-1575043694:32270..32311Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:32530..32593TCONS_00028842-exon-sc0000708-1491911889:32530..32593Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:32530..32593TCONS_00028842-exon-sc0000708-1510915933:32530..32593Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:32530..32593TCONS_00028842-exon-sc0000708-1575043694:32530..32593Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:32770..32858TCONS_00028842-exon-sc0000708-1491911889:32770..32858Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:32770..32858TCONS_00028842-exon-sc0000708-1510915933:32770..32858Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:32770..32858TCONS_00028842-exon-sc0000708-1575043694:32770..32858Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:33737..33809TCONS_00028842-exon-sc0000708-1491911889:33737..33809Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:33737..33809TCONS_00028842-exon-sc0000708-1510915933:33737..33809Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:33737..33809TCONS_00028842-exon-sc0000708-1575043694:33737..33809Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1491911889:34208..36876TCONS_00028842-exon-sc0000708-1491911889:34208..36876Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1510915933:34208..36876TCONS_00028842-exon-sc0000708-1510915933:34208..36876Clytia hemisphaericaexon
TCONS_00028842-exon-sc0000708-1575043694:34208..36876TCONS_00028842-exon-sc0000708-1575043694:34208..36876Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000708supercontigsc0000708:25467..36876 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.233411	0.259769	0.168161	0.261546	9.01817	2.1613	10.4335	0.12685	0.0658809	0.207194	15.6284	1.57804	4.28464	3.04306	0.0945453	0.108338	0.213403	0.170909	0.0423926	0.0415178	0.0966518	0.138656	0.191758	0.113496	19.1539	16.8944	0.0553976	0.0573908	0.127827	0.232103
Blast
[Close]
BLAST of TCONS_00028842 vs. Swiss-Prot (Human)
Match: PTCD3 (Pentatricopeptide repeat domain-containing protein 3, mitochondrial OS=Homo sapiens GN=PTCD3 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.978e-16
Identity = 90/436 (20.64%), Postives = 185/436 (42.43%), Query Frame = 1 
Query:  130 TWRNDGFAETLFEELKEQGNAQTYEVFMLGLIKHGEYIRAFHLFKEFQDKGFSGSLHLYETLIKH-VVDVRQGDQDRWEFVEEIVASM---KVKPTSATFATLMSVAIQQESGVSKLCQRLFGEMKKLNITPSLGTLYHLLAGERKEFETQKNYIQNIR-ILYMCVDELQSGSVDLQLTHPSDVEFFEMAMHLARFKRVGEVAEKIFNVITQSNLHHMLGVRAKQ--FYGNFLAAIARSPKDMESVYKHYETIVPNYLIPHDWVYEQLFFASRNNQDISYVPRFYNDMSKYNVYLMNKKLLPALYLALDMPIPQENAAEFLGIVEGSKYAIENIDVTDEVRQNMISTAMN----IYCLNGKPHEAIEVAKYHKLLGTMPTFKSLLKILTVNISQEDKKSAMQTLKLMSSMSFQYDDLLDETINKSFLQSERERVML 1404
            TWR    AE +F  + E+ N  +Y   + G++KH  Y +A +L+ E  +      ++ +  LI+  V  + +  +++W  + E++  M   KVKP   TF T++    +          ++  EMK + I PSL T +H++    + F+   + ++    I+Y  ++EL       +   P D +FF+ AM +    R  E+A ++  ++   +    +G    +  +Y  F   I    + ++   K YE ++P+   PH      L  A      +  +P+ + D  +Y     +      L L      P E    F       K A E+  +  +  Q+  +T++N    ++   G+  EA ++    +    +P  + L +++           A++ ++L S+ S    + L + +   F  ++ ++  L
Sbjct:  237 TWRAKNNAERIFSLMPEK-NEHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVYTFNALIEATVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTILKCLRRFHVFARSPALQVLREMKAIGIEPSLATYHHII----RLFDQPGDPLKRSSFIIYDIMNELMGKRFSPK--DPDDDKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYSKFFDLICLM-EQIDVTLKWYEDLIPSAYFPHSQTMIHLLQALDVANRLEVIPKIWKDSKEYGHTFRSDLREEILMLMARDKHPPELQVAFADCAADIKSAYESQPIR-QTAQDWPATSLNCIAILFLRAGRTQEAWKMLGLFRKHNKIPRSELLNELMDSAKVSNSPSQAIEVVELASAFSLPICEGLTQRVMSDFAINQEQKEAL 663
The following BLAST results are available for this feature:
BLAST of TCONS_00028842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTCD33.978e-1620.64Pentatricopeptide repeat domain-containing protein... [more]
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