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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028839 ID=TCONS_00028839|Name=TCONS_00028839|organism=Clytia hemisphaerica|type=transcript|length=4277bp
agcGATTCTTCTTTTTGCCTGCAAAGAACATGCATGAAGAAATAGAACAT
GGTCTACCTCCATTAACGAATTTGGAAGAAACATCAAAAGAAGTTGCAGA
TGATGATTTGTACAATTACAGCTGTTCCAGGGTATGTGTTGGTCTACTGC
TTTTGAATGCGAATGATGCAGTAAAAGAAGGTGATGGAGATAGGCTCATG
AGGTTTTATAGAATTTACACATTCATATTTCGTATGAACGGAAACCACAA
GTATGCCTACATCTGCTTGCGATTAAAAGCAAGAGAACTTGCACTCCTCT
CAGCAAGAGAGTATCATAGGCTGAAATGGAACCGTTTCGTCAATAATGAA
GGTGGTCGTGGAAAGAACATTTCTCTTGACTTAAGATTAGAGCACATCAA
TAAAGTGACGAAAGCTTTAATCAAGTCCCAGGGAATGCAAAATGTCACAG
ATGAAAGTGTTGAAAGTATTTCCAAGGCCATAGGAGGGATGGAAGAATTG
GTTGAATCCCAACTTTTAGATGCTGGGATTACAAAAAGATCTAGCCATCA
CTCAAATAAACATAAACACGACATGTTTGCCTCTCTATTCAATGAAGTTC
ACTGTCAAAGCAAAAACTTTCAGGAAAAACCTGGACGGAAACTTgagtat
ttcaaaaactttgacaaTGACATATTTAAAAAACTAAATAAGGTATTACT
TTTAAAATGGTTGAAAAGACTTACTACAAAATGGCACAACCAAGACtttt
tttacgatgaaaaagaagacagtttataaaaccttttcaaagattatatt
ttaaaacaatttgcaattttttttttNATATGTCATTTACCTATTCATAA
TTTAGGTATGGAATACAAGACGAAACTGGGAAAAGTTTTACATTCTTTGG
AGGAGACCAGTTGACGGAGGAAAGGTCAAGAACAGTGCAGTTTGCTCGAG
CTGATGGGAGAACAGTAGAAGAACGGTTACAAGGAATAATCCCGAAATTT
GAAGACTGGCATGCTATAAGAACTGGATATGAAtCTGCATTGAAAATCTT
CTTTAATAAAGAATCGACTGCGGATGCTGGAACCTATCTTTCCAATGCTA
TCAAAACTGGTAACAAAAACGCCCTAAGGAAGGTTGAGGATAAGTTCCAA
GAGGTGAAAGAATTCTTTGACATTGAGACAAAAGCGTTACTGGTTTCAGG
ATTTTTGAAGCAAGAAGGTGTTGACAGCATTGAAGATTATCATCCTCCGT
TAGAACTGGAAACTAAAGACTTAGCAACAAAAAGAAGATGGCTACATGGA
AGAATTCACTTATTTCTGAAAAACAATGTTATGGGTTCATTGGAAATGCT
GACAAAAATGTTGCCTGAACAAAAAACCCATAAGTGCCGTGACAAGAAAT
GCACTAAACGATTCTTCTTTTTGCCTGCAAAGAACATGCATGAAGAAATA
GAACATGGTCTACCTCCATTAACGAATTTGGAAGAAACATCAAAAGAAGT
TGCAGATGATGATTTGTACAATTACAGCTGTTCCAGGGTATGTGTTGGTC
TACTGCTTTTGAATGCGAATGATGCAGTAAAAGAAGGTGATGGAGATAGG
CTCATGAGGTTTTATAGAATTTACACATTCATATTTCGTATGAACGGAAA
CCACAAGTATGCCTACATCTGCTTGCGATTAAAAGCAAGAGAACTTGCAC
TCCTCTCAGCAAGAGAGTATCATAGGCTGAAATGGAACCGTTTCGTCAAT
AATGAAGGTGGTCGTGGAAAGAACATTTCTCTTGACTTAAGATTAGAGCA
CATCAATAAAGTGACGAAAGCTTTAATCAAGTCCCAGGGAATGCAAAATG
TCACAGATGAAAGTGTTGAAAGTATTTCCAAGGCCATAGGAGGGATGGAA
GAATTGGTTGAATCCCAACTTTTAGATGCTGGGATTACAAAAAGATCTAG
CCATCACTCAAATAAACATAAACACGACATGTTTGCCTCTCTATTCAATG
AAGTTCACTGTCAAAGCAAAAACTTTCAGGAAAAACCTGGACGGAAACTT
GAGTATTTCAAAAACTTTGACAATGACATATTTAAAAAACTAAATAAGGT
ATTACTTTTAAAATGGTTGAAAAGACTTACTACAAAATGGCACAACCAAG
ACTTTTTTTACGATGAAAAAGAAGACAGTTTATAAAACCTTTTCAAAGAT
TATATTTTAAAACAATTTGCAATTTTTTTTTTTTAGTTTTTTACATTGAT
TATCAGGTAAAAGTGAAATTTGGCCAACAATATGTTTCTGTGACCCCTAA
ACAAAGATTTTTTGGATACACGCTTTTTTTTATAAAAATAACTTTTATAA
GAATATCAGGGTGAGATTTCAGAGTTAGAACAATAGGCCTATTGATTAGA
ACAATAGAAAAATAAGAATAATGCTCACCCCAGCCAAACTATACTATTTT
TATAAAAAAAAGCGTGTATTGCACTTTGAAGTTTTTGGATTTTGCTTGAT
TTGAATAGATTATGACCAAACCGACACATAATGTGAAAAATATAACTATT
TTACATAAAAAAACATATAAAACATAACCTATGACCCGTTAGGTTTGACT
GAAAAGATGTAAAATTGATTATGGAAAATATTATTGACTTATCTCCTAAC
TTTACTTTGACGTTATTAAAACCGTAAACAAATATTTTGAGTTTAGGTAT
TGATTGAAAAGCTTCTCATTGTTTGTTAATAAAAATTTTGGGTGAAGTTT
TTGATTTTGACAACAAAGCTAATGATGTTAATGTTAAAAAAGAGGATAAC
ATATTGACATTCTACACTTGAATCAACCATATACATCTCTCAATGATTAT
GAATTAGGTTTTGATATTTGATCATGATTATTATGAATTAGATGACAATA
TTTTTAGACATTTGATTAATTTGGACTTAAATTGCAAATCACAAATTCGC
CTGACTCAGCTAAATTCTTTCATTTTCCTAAGGGATTTTCTTTTCAAAAA
GCATGAAATAACATATTTACAGGGATTTAATTTTCCAAAAAACCCCAAAA
ACTAATGCGTGTAAGATAACAATTTATGCATTCCATTTCACCCAAATAAA
TCTTGCCAAAAAATATCGTCATCAGAATCTAATTCATAATCATTGAGAGG
TGTATATGGTTGATTCAAGGATAGCAAGTCAATGTTATCATCTTCTTCAC
TTGCATCATTAGCTTCATTGTCACAATAAAAAActtcaacaaaaatttga
ttaacAAACACACTTAGAGGCTCCTCAATGCCTAGactcaaaatatttga
ttcagTTTTAATAAAGTCAACATTTTCCATAATTAAATTTACATCTTTTT
CAGCTAAATGTAACTGGTCAAGGCAATCCAAAACCACTTTTTTCTCCATC
TCACTTGCTGATCTAACTTTTTGCAAGGGTTCAGGTTGAGGGATTTCAAC
CTCGGGTACATCTGTACATTTTTCACACACGCAAAACTTTTCACAGACAT
CACAACATTCATGTAAATCTAATGCGCTACCAGCATCTggaatttcattg
aaacattTCAGCAAAGACATCCTTCTGCATTCATTCTCTTTGTTTTTGAT
GATTCTCTCCAAATCGTTATCATTGCAGTGAGAAATGTCACAAGGACGAT
AAAATAAAATTGCATTACTTGATTGTCCATCTCGACCAGCTCTACCAATT
TCTTGAATGTATGCCTCAACATCTGAGGGTAGCCCTGCGTGAATGATGTG
TCTAATGTGCTTGATGTTAACTCCCATTCCCAGGGCAGAAGTAGCcacaa
taaaaaaacattttccacctTGATCTTTTGAAAACTCCTCCATAACTCTA
AGCTTGAGGGGTTTGGGAGTATCGCCATGAAAGATACCAACAGTTCCATT
TCTATACTTTCTGTCAAAAAGCATGAATATATCACCACAAAGTTTGATAC
TGCTACAATATATTATAGCTTTTTCACAATGCCCATGACGATCAAAGTCT
TCTAAAAGAGGTTTTAAGTAGGAAATGATTTCCTCAAAATCAGAAGTGAT
TTTTACTTTGTTGACAGAAATTTTCACATTAGGTTTTTCAGGCGACAACC
TTTCAATTTTATAGTTCTTCAACTGGAgcatatttacaattttttttgtt
gtctttttatttGCTGTAGCGGTCAGACACAAAAATGGTTTGTTGAAGAT
TGCACGTAAATTTCCAACTTCAGCATACATTTTACGAAACGCTTGCTTTT
GAGTAGATGGGAGTCCCCTGAAAAGGN Run BLAST on NCBI transcript from alignment at sc0000708:4148..9186+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028839 ID=TCONS_00028839|Name=TCONS_00028839|organism=Clytia hemisphaerica|type=transcript|length=5039bp|location=Sequence derived from alignment at sc0000708:4148..9186+ (Clytia hemisphaerica)
agcGATTCTTCTTTTTGCCTGCAAAGAACATGCATGAAGAAATAGAACAT
GGTCTACCTCCATTAACGAATTTGGAAGAAACATCAAAAGAAGTTGCAGA
TGATGATTTGTACAATTACAGCTGTTCCAGGGTATGTGTTGGTCTACTGC
TTTTGAATGCGAATGATGCAGTAAAAGAAGGTGATGGAGATAGGCTCATG
AGGTTTTATAGAATTTACACATTCATATTTCGTATGAACGGAAACCACAA
GTATGCCTACATCTGCTTGCGATTAAAAGCAAGAGAACTTGCACTCCTCT
CAGCAAGAGAGTATCATAGGCTGAAATGGAACCGTTTCGTCAATAATGAA
GGTGGTCGTGGAAAGAACATTTCTCTTGACTTAAGATTAGAGCACATCAA
TAAAGTGACGAAAGCTTTAATCAAGTCCCAGGGAATGCAAAATGTCACAG
ATGAAAGTGTTGAAAGTATTTCCAAGGCCATAGGAGGGATGGAAGAATTG
GTTGAATCCCAACTTTTAGATGCTGGGATTACAAAAAGATCTAGCCATCA
CTCAAATAAACATAAACACGACATGTTTGCCTCTCTATTCAATGAAGTTC
ACTGTCAAAGCAAAAACTTTCAGGAAAAACCTGGACGGAAACTTgagtat
ttcaaaaactttgacaaTGACATATTTAAAAAACTAAATAAGGTATTACT
TTTAAAATGGTTGAAAAGACTTACTACAAAATGGCACAACCAAGACtttt
tttacgatgaaaaagaagacagtttataaaaccttttcaaagattatatt
ttaaaacaatttgcaattttttttttNATATGTCATTTACCTATTCATAA
TTTAGGTATGGAATACAAGACGAAACTGGGAAAAGTTTTACATTCTTTGG
AGGAGACCAGTTGACGGAGGAAAGGTCAAGAACAGTGCAGTTTGCTCGAG
CTGATGGGAGAACAGTAGAAGAACGGTTACAAGGAATAATCCCGAAATTT
GAAGACTGGCATGCTATAAGAACTGGATATGAAGTAAGCACAGTTTTAAA
TGTGATTTGATTTAATTGGATCGTGATTTTCTATTTATATCATTATCTAT
TTTTTAGGTAATTAAACTAgagatttttcatttcttttagtCTGCATTGA
AAATCTTCTTTAATAAAGAATCGACTGCGGATGCTGGAACCTATCTTTCC
AATGCTATCAAAACTGGTAACAAAAACGCCCTAAGGAAGGTTGAGGATAA
GTTCCAAGAGGTGAAAGAATTCTTTGACATTGAGACAAAAGCGTTACTGG
TTTCAGGATTTTTGAAGCAAGAAGGtaagaaaaaaatatacctttagtgg
agaaattttggcgcagttttaatttttcaaaaatgtcatagacctttttc
agtttaaaagtcAGAATAAATTATTGCCTTATATTAATAAACAGTGAGAT
CATATGAAACTTGAAACatccaaaattaaaataatttgatatAATCATGC
GACCTTTTTACTTAAAAACAATAAACAGAAAATACACAGAAATAATTTGG
TCATTTTTAGCATTTTACACCAATTGCGCCAAATTTTGTCTGCGCCAAAA
TTTCTCCACTTAAGGTAGTATATTTCTTCTACACATTTACCAAATAAGAA
AATGATTTTAATTCTGTTAATTTGAAAGTTTGTTATTTTTGTTGTTTTAT
CAGGTGTTGACAGCATTGAAGATTATCATCCTCCGTTAGAACTGGAAACT
AAAGACTTAGCAACAAAAAGAAGATGGCTACATGGAAGAATTCACTTATT
TCTGAAAAACAATGTTATGGGTTCATTGGAAATGCTGACAAAAATGTTGC
CTGAACAAAAAACCCATAAGTGCCGTGACAAGAAATGCACTAAAGTAAGA
CTTTTATCTTAAAAATTAGGGTAAAAAGAGAATGGCATTTTTCTGATTTT
GCTTTACATTGTTTTCCATTTTTACAACCATATACTTTAACATGAAAACA
CTTCTAAATTGAAACTGTGACAAATTTGTGGGTTAGTAATTTTCTTTCAT
TAGCAGATGAATAAAAAGTGGTTCGTTAGTAAGTAATTAACTTCACTTTG
GTCTAAATTTATAGAGAAATAATACAGTGAAAAGATAAATTTGATTTTAA
TTAATTTTCATTTTTTACAGCGATTCTTCTTTTTGCCTGCAAAGAACATG
CATGAAGAAATAGAACATGGTCTACCTCCATTAACGAATTTGGAAGAAAC
ATCAAAAGAAGTTGCAGATGATGATTTGTACAATTACAGCTGTTCCAGGG
TATGTGTTGGTCTACTGCTTTTGAATGCGAATGATGCAGTAAAAGAAGGT
GATGGAGATAGGCTCATGAGGTTTTATAGAATTTACACATTCATATTTCG
TATGAACGGAAACCACAAGTATGCCTACATCTGCTTGCGATTAAAAGCAA
GAGAACTTGCACTCCTCTCAGCAAGAGAGTATCATAGGCTGAAATGGAAC
CGTTTCGTCAATAATGAAGGTGGTCGTGGAAAGAACATTTCTCTTGACTT
AAGATTAGAGCACATCAATAAAGTGACGAAAGCTTTAATCAAGTCCCAGG
GAATGCAAAATGTCACAGATGAAAGTGTTGAAAGTATTTCCAAGGCCATA
GGAGGGATGGAAGAATTGGTTGAATCCCAACTTTTAGATGCTGGGATTAC
AAAAAGATCTAGCCATCACTCAAATAAACATAAACACGACATGTTTGCCT
CTCTATTCAATGAAGTTCACTGTCAAAGCAAAAACTTTCAGGAAAAACCT
GGACGGAAACTTGAGTATTTCAAAAACTTTGACAATGACATATTTAAAAA
ACTAAATAAGGTATTACTTTTAAAATGGTTGAAAAGACTTACTACAAAAT
GGCACAACCAAGACTTTTTTTACGATGAAAAAGAAGACAGTTTATAAAAC
CTTTTCAAAGATTATATTTTAAAACAATTTGCAATTTTTTTTTTTTAGTT
TTTTACATTGATTATCAGGTAAAAGTGAAATTTGGCCAACAATATGTTTC
TGTGACCCCTAAACAAAGATTTTTTGGATACACGCTTTTTTTTATAAAAA
TAACTTTTATAAGAATATCAGGGTGAGATTTCAGAGTTAGAACAATAGGC
CTATTGATTAGAACAATAGAAAAATAAGAATAATGCTCACCCCAGCCAAA
CTATACTATTTTTATAAAAAAAAGCGTGTATTGCACTTTGAAGTTTTTGG
ATTTTGCTTGATTTGAATAGATTATGACCAAACCGACACATAATGTGAAA
AATATAACTATTTTACATAAAAAAACATATAAAACATAACCTATGACCCG
TTAGGTTTGACTGAAAAGATGTAAAATTGATTATGGAAAATATTATTGAC
TTATCTCCTAACTTTACTTTGACGTTATTAAAACCGTAAACAAATATTTT
GAGTTTAGGTATTGATTGAAAAGCTTCTCATTGTTTGTTAATAAAAATTT
TGGGTGAAGTTTTTGATTTTGACAACAAAGCTAATGATGTTAATGTTAAA
AAAGAGGATAACATATTGACATTCTACACTTGAATCAACCATATACATCT
CTCAATGATTATGAATTAGGTTTTGATATTTGATCATGATTATTATGAAT
TAGATGACAATATTTTTAGACATTTGATTAATTTGGACTTAAATTGCAAA
TCACAAATTCGCCTGACTCAGCTAAATTCTTTCATTTTCCTAAGGGATTT
TCTTTTCAAAAAGCATGAAATAACATATTTACAGGGATTTAATTTTCCAA
AAAACCCCAAAAACTAATGCGTGTAAGATAACAATTTATGCATTCCATTT
CACCCAAATAAATCTTGCCAAAAAATATCGTCATCAGAATCTAATTCATA
ATCATTGAGAGGTGTATATGGTTGATTCAAGGATAGCAAGTCAATGTTAT
CATCTTCTTCACTTGCATCATTAGCTTCATTGTCACAATAAAAAActtca
acaaaaatttgattaacAAACACACTTAGAGGCTCCTCAATGCCTAGact
caaaatatttgattcagTTTTAATAAAGTCAACATTTTCCATAATTAAAT
TTACATCTTTTTCAGCTAAATGTAACTGGTCAAGGCAATCCAAAACCACT
TTTTTCTCCATCTCACTTGCTGATCTAACTTTTTGCAAGGGTTCAGGTTG
AGGGATTTCAACCTCGGGTACATCTGTACATTTTTCACACACGCAAAACT
TTTCACAGACATCACAACATTCATGTAAATCTAATGCGCTACCAGCATCT
ggaatttcattgaaacattTCAGCAAAGACATCCTTCTGCATTCATTCTC
TTTGTTTTTGATGATTCTCTCCAAATCGTTATCATTGCAGTGAGAAATGT
CACAAGGACGATAAAATAAAATTGCATTACTTGATTGTCCATCTCGACCA
GCTCTACCAATTTCTTGAATGTATGCCTCAACATCTGAGGGTAGCCCTGC
GTGAATGATGTGTCTAATGTGCTTGATGTTAACTCCCATTCCCAGGGCAG
AAGTAGCcacaataaaaaaacattttccacctTGATCTTTTGAAAACTCC
TCCATAACTCTAAGCTTGAGGGGTTTGGGAGTATCGCCATGAAAGATACC
AACAGTTCCATTTCTATACTTTCTGTCAAAAAGCATGAATATATCACCAC
AAAGTTTGATACTGCTACAATATATTATAGCTTTTTCACAATGCCCATGA
CGATCAAAGTCTTCTAAAAGAGGTTTTAAGTAGGAAATGATTTCCTCAAA
ATCAGAAGTGATTTTTACTTTGTTGACAGAAATTTTCACATTAGGTTTTT
CAGGCGACAACCTTTCAATTTTATAGTTCTTCAACTGGAgcatatttaca
attttttttgttgtctttttatttGCTGTAGCGGTCAGACACAAAAATGG
TTTGTTGAAGATTGCACGTAAATTTCCAACTTCAGCATACATTTTACGAA
ACGCTTGCTTTTGAGTAGATGGGAGTCCCCTGAAAAGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00028839-exon-sc0000708-1491911889:4148..5180 | TCONS_00028839-exon-sc0000708-1491911889:4148..5180 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1510915933:4148..5180 | TCONS_00028839-exon-sc0000708-1510915933:4148..5180 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1575043694:4148..5180 | TCONS_00028839-exon-sc0000708-1575043694:4148..5180 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1491911889:5288..5471 | TCONS_00028839-exon-sc0000708-1491911889:5288..5471 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1510915933:5288..5471 | TCONS_00028839-exon-sc0000708-1510915933:5288..5471 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1575043694:5288..5471 | TCONS_00028839-exon-sc0000708-1575043694:5288..5471 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1491911889:5851..6041 | TCONS_00028839-exon-sc0000708-1491911889:5851..6041 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1510915933:5851..6041 | TCONS_00028839-exon-sc0000708-1510915933:5851..6041 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1575043694:5851..6041 | TCONS_00028839-exon-sc0000708-1575043694:5851..6041 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1491911889:6318..9186 | TCONS_00028839-exon-sc0000708-1491911889:6318..9186 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1510915933:6318..9186 | TCONS_00028839-exon-sc0000708-1510915933:6318..9186 | Clytia hemisphaerica | exon |
| TCONS_00028839-exon-sc0000708-1575043694:6318..9186 | TCONS_00028839-exon-sc0000708-1575043694:6318..9186 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000708 | supercontig | sc0000708:4148..9186 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00028839 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 6.818e-20 Identity = 82/271 (30.26%), Postives = 129/271 (47.60%), Query Frame = -3
Query: 3493 FRKMYAEVGNLR-AIFNKPFLCLXXXXXXXXXXKIVNMLQLKNYKIERLSPEKPNVKISVNKVKITSDFEEIISYLKPLLEDFDRHGHCEK-AIIYCSSIKLCGDIFMLFDRKYRNGTVGIFHGDTPKPLKLRVMEEFSKDQGGKCFFIVATSALGMGVNIKHIRHIIHAGLPSDVEAYIQEIGRAGRDGQSSNAILFYRPCDISHCNDNDLERIIKNK-----------------ENECRRMSLLKCFNEIPDAGSALDL---HECCDVC 4239
FR + ++G+L+ A+ P + LTATA+ + IV L L+N +I ++PN+ + V + I+ L+P L H E IIYC S K+ + + + N + G +H + + F +D+ +C ++AT A GMG+N IR +IH G P D+E+Y QEIGRAGRDG S+ + + P DI + N + L I K + CRR +L F + ++L + +CCD C
Sbjct: 680 FRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRR-----KTGNILQDLQPFLVKTSSHWEFEGPTIIYCPSRKMTQQV--TGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEI-QC--VIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADI-NLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNC 939
The following BLAST results are available for this feature:
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