TCONS_00028838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028838
Unique NameTCONS_00028838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028838 ID=TCONS_00028838|Name=TCONS_00028838|organism=Clytia hemisphaerica|type=transcript|length=592bp
AGAGGTCCTAGAACAGAGCCTTGTGGAACACCATGAGGGATTATTTTAAT
AGAAGATTTATTAGATGAAATAGAGACAAACTGGGATCTGTTAGATAAAT
ATGATCTGAACCAGTCATTAGCCTTTCCTCTAACCCCATAGTGGTCGATT
TTTGAAATTAGAATAGAATGATCAACAGTATCGAAAGCCTTTTGCAAATC
AACAAGAACACCACACACAAAGTTACCATCATCAAGAGATTTCCGAATAC
GTTCAACAATATTAAGTAAGGTATGGATGGTTGAGTGAGATCTACGAAAA
CCAAACTGGCGCTCAAAAAATACTCGATTAGAATCTAAGAAAGTAATAAG
ACGAGAGTACATAAGTTTCTCAAGAATTTTCTCTATGTTGGAAAGGAGAG
ATTTAGGGCGATAATTGGATATTTCAAGTGTAgagcctttgtttttgaaa
acgggAATAACTTTCGAGAGTTTAAGCATTGTGGGAAAACAACCAGATGC
AACtgaaaggttaaaaagaaaagaaaggggTCCAGAGAGATCAAACTTTA
GAAGACGAAGAATTTTTGGGGAAATGCTATAAGGGCCAGATG
Run BLAST on NCBI

protein sequence of TCONS_00028838-protein

>TCONS_00028838-protein ID=TCONS_00028838-protein|Name=TCONS_00028838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
SGPYSISPKILRLLKFDLSGPLSFLFNLSVASGCFPTMLKLSKVIPVFKN
KGSTLEISNYRPKSLLSNIEKILEKLMYSRLITFLDSNRVFFERQFGFRR
SHSTIHTLLNIVERIRKSLDDGNFVCGVLVDLQKAFDTVDHSILISKIDH
YGVRGKANDWFRSYLSNRSQFVSISSNKSSIKIIPHGVPQGSVLGP
Run BLAST on NCBI

transcript from alignment at sc0000707:148285..148876

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028838 ID=TCONS_00028838|Name=TCONS_00028838|organism=Clytia hemisphaerica|type=transcript|length=592bp|location=Sequence derived from alignment at sc0000707:148285..148876 (Clytia hemisphaerica)
CATCTGGCCCTTATAGCATTTCCCCAAAAATTCTTCGTCTTCTAAAGTTT
GATCTCTCTGGAcccctttcttttctttttaacctttcaGTTGCATCTGG
TTGTTTTCCCACAATGCTTAAACTCTCGAAAGTTATTcccgttttcaaaa
acaaaggctcTACACTTGAAATATCCAATTATCGCCCTAAATCTCTCCTT
TCCAACATAGAGAAAATTCTTGAGAAACTTATGTACTCTCGTCTTATTAC
TTTCTTAGATTCTAATCGAGTATTTTTTGAGCGCCAGTTTGGTTTTCGTA
GATCTCACTCAACCATCCATACCTTACTTAATATTGTTGAACGTATTCGG
AAATCTCTTGATGATGGTAACTTTGTGTGTGGTGTTCTTGTTGATTTGCA
AAAGGCTTTCGATACTGTTGATCATTCTATTCTAATTTCAAAAATCGACC
ACTATGGGGTTAGAGGAAAGGCTAATGACTGGTTCAGATCATATTTATCT
AACAGATCCCAGTTTGTCTCTATTTCATCTAATAAATCTTCTATTAAAAT
AATCCCTCATGGTGTTCCACAAGGCTCTGTTCTAGGACCTCT

Coding sequence (CDS) from alignment at sc0000707:148285..148876

>TCONS_00028838 ID=TCONS_00028838|Name=TCONS_00028838|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0000707:148285..148876 (Clytia hemisphaerica)
TCTGGCCCTTATAGCATTTCCCCAAAAATTCTTCGTCTTCTAAAGTTTGA
TCTCTCTGGAcccctttcttttctttttaacctttcaGTTGCATCTGGTT
GTTTTCCCACAATGCTTAAACTCTCGAAAGTTATTcccgttttcaaaaac
aaaggctcTACACTTGAAATATCCAATTATCGCCCTAAATCTCTCCTTTC
CAACATAGAGAAAATTCTTGAGAAACTTATGTACTCTCGTCTTATTACTT
TCTTAGATTCTAATCGAGTATTTTTTGAGCGCCAGTTTGGTTTTCGTAGA
TCTCACTCAACCATCCATACCTTACTTAATATTGTTGAACGTATTCGGAA
ATCTCTTGATGATGGTAACTTTGTGTGTGGTGTTCTTGTTGATTTGCAAA
AGGCTTTCGATACTGTTGATCATTCTATTCTAATTTCAAAAATCGACCAC
TATGGGGTTAGAGGAAAGGCTAATGACTGGTTCAGATCATATTTATCTAA
CAGATCCCAGTTTGTCTCTATTTCATCTAATAAATCTTCTATTAAAATAA
TCCCTCATGGTGTTCCACAAGGCTCTGTTCTAGGACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016365XLOC_016365Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028838-proteinTCONS_00028838-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028838-exon-sc0000707-1491911889:148285..148876TCONS_00028838-exon-sc0000707-1491911889:148285..148876Clytia hemisphaericaexon
TCONS_00028838-exon-sc0000707-1510915933:148285..148876TCONS_00028838-exon-sc0000707-1510915933:148285..148876Clytia hemisphaericaexon
TCONS_00028838-exon-sc0000707-1575043694:148285..148876TCONS_00028838-exon-sc0000707-1575043694:148285..148876Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000707supercontigsc0000707:148285..148876 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.05386	2.68889	3.2395	3.84838	2.83793	1.89577	1.87035	2.00338	1.40305	0.587506	0.561309	1.31631	1.22073	1.66803	0.803987	0.821507	0.993644	1.17694	1.23774	0.312429	1.32979	1.35215	1.02321	0.876617	2.47591	2.23242	0.946023	1.74903	2.42922	0.69503
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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