|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028815 ID=TCONS_00028815|Name=TCONS_00028815|organism=Clytia hemisphaerica|type=transcript|length=2115bpRun BLAST on NCBI protein sequence of TCONS_00028815-protein >TCONS_00028815-protein ID=TCONS_00028815-protein|Name=TCONS_00028815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp MKMHSYHSGKVLSLSMSPISHVAATTGEDGTVRLYDYFAKKLLCQKKFNSRun BLAST on NCBI transcript from alignment at sc0000705:112860..146426- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028815 ID=TCONS_00028815|Name=TCONS_00028815|organism=Clytia hemisphaerica|type=transcript|length=33567bp|location=Sequence derived from alignment at sc0000705:112860..146426- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000705:112860..146426- >TCONS_00028815 ID=TCONS_00028815|Name=TCONS_00028815|organism=Clytia hemisphaerica|type=CDS|length=20772bp|location=Sequence derived from alignment at sc0000705:112860..146426- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028815 vs. Swiss-Prot (Human)
Match: CFA44 (Cilia- and flagella-associated protein 44 OS=Homo sapiens GN=CFAP44 PE=1 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 4.056e-44 Identity = 89/243 (36.63%), Postives = 147/243 (60.49%), Query Frame = 2
Query: 320 QDSNGGIWSLDLSFSHTSQAPMKMHSYHSGKVLSLSMSPISHVAATTGEDGTVRLYDYFAKKLLCQKKFNSSGHSVIWIPRVIDTSCSSILVGFGDGVIRHLTITNSNKRT--SKNPNASNVALHLSQVFKPHLKAVTCMVIDTPGKILATGSEDGIVFFFQIDKVFKPLGFVEVETHVVSLEWSSVT-XXXXXXXXXXDGAVFEFKPPQAGK-FDTAKSFQIPLEDLLINKFQFESVKDDLL 1036
QD+NG IW LDLSFS+ +Q P + S+HSG + ++++SP++++ ATT D +VR+YD+ +K L Q KF G +++W+PR+++ + + I+VGF DGV+R L + + T + + + L QVFKPH VT + + G+ILATGS+D VFFF++++ +KP+G++ V L WS ++ LL++ ++G + E P + D ++D+ I F F SVK +L
Sbjct: 442 QDANGAIWKLDLSFSNITQDPECLFSFHSGAIEAVAVSPLTYLMATTALDCSVRIYDFASKTPLAQMKFKQGGTALVWVPRMVNFTGAQIIVGFEDGVVRILELYDPKGLTIFAGRKKILDADIQLKQVFKPHTACVTALAYERDGEILATGSKDQTVFFFEVERDYKPIGYINTPGPVCQLMWSPMSHPESTLLIICENGYILEAPLPTIKQEEDDHDVVSYEIKDMCIKCFHFSSVKSKIL 684 HSP 2 Score: 143.665 bits (361), Expect = 2.324e-35 Identity = 86/240 (35.83%), Postives = 127/240 (52.92%), Query Frame = 2
Query: 1259 VLRGFYKCASSDNFILTLDGWDAGFFYECKFPVEKKKMDEKQVKLMKKFGQEPEKKEEGNIKAIKIPEISDVPVSSINFSKNGDFLAMGLQSGAIRVQ--NMRKTTFEKLDSYWFINAHDNQTGVIRDIAISFDNKFLMSVGEDGNIFTFSFMDQQKLKEFEQTRTQIKTKTIESRP-ADDIDDPKHYSIELEKQKAEHDKKLRLAEEKKQNVKTVIGKLRREFCKLKGKNAELPSYLQL 1969
+L GFY + F ++L G+D+GF Y C+FP + D K+ K EP I + + D P+ +I F+ N + G+++GAIRV N + L YW N HDN G I+ IA SFD++FL++ G DGNIF F+ + L++ + + IE+ P +DI+DPK YSIE ++K EHDK ++ E K + I LR EFC L N +LP ++Q
Sbjct: 751 ILCGFY--SEPGKFWVSLGGYDSGFLYHCEFPPCDESSDFKEQK------DEP-------IDVRYLADTEDNPIQTITFNINKVMMFCGMKNGAIRVYVLNQNDPSLTSLVDYWHFNMHDNNYGCIKSIANSFDDRFLVTAGADGNIFVFNIFSEFMLRKDMKAKVPSPRFGIETEPIPEDIEDPKAYSIENARRKREHDKLMKEVGEIKARKREQIKALRSEFCNLLEMNEKLPKHMQF 975 The following BLAST results are available for this feature:
BLAST of TCONS_00028815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.