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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028811 ID=TCONS_00028811|Name=TCONS_00028811|organism=Clytia hemisphaerica|type=transcript|length=4102bpRun BLAST on NCBI protein sequence of TCONS_00028811-protein >TCONS_00028811-protein ID=TCONS_00028811-protein|Name=TCONS_00028811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1025bp MATDWLQSTQANATFVIGDDDEEEEIYFGSFRGDVVGLRYYAGKVNNHEMRun BLAST on NCBI transcript from alignment at sc0000705:40675..75019- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028811 ID=TCONS_00028811|Name=TCONS_00028811|organism=Clytia hemisphaerica|type=transcript|length=34345bp|location=Sequence derived from alignment at sc0000705:40675..75019- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000705:40675..75019- >TCONS_00028811 ID=TCONS_00028811|Name=TCONS_00028811|organism=Clytia hemisphaerica|type=CDS|length=61560bp|location=Sequence derived from alignment at sc0000705:40675..75019- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028811 vs. Swiss-Prot (Human)
Match: HLTF (Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2) HSP 1 Score: 557.755 bits (1436), Expect = 2.449e-177 Identity = 274/551 (49.73%), Postives = 384/551 (69.69%), Query Frame = 3
Query: 1464 PRATLIVCPLSVIHNWQHQLETHLEYGA-LDVYVYYGSDRCQNPDELAKKDVILTTYQTLSTDFAKMSKTDYKKMSALHQVNWLRVVLDEGHCIRNITSNQSKACIALNSERRWFVTGTPVQNSFKDLYAVLCFLRVSPFHKRPDWWKRIIERPLNAAERGGDVQGVLEILQAILLNISIRRTKQHKVNNKSVIDLPPKNIYVQYIEMSEEERKLYETFKNEGKAILERYITENKLSASYAHMLVILMRLRQLCCHPKLCAQILDCFNQPAGGASQTPEKLMMKLQQILTVLLSSG-DEECPICLDAFNNPVITHCAHLYCRPCIEGVIRADKP--KCPLCRNDISKEKLVKPAAEKDDIINGEGGGAKQATWSSSSKVDGLITMLKQESEENPRRKHLVVSQFAQFLNLLEKPIQESGYKFVRLDGSMTMKQRTDAITRFSDKSDNSPTIMLLSLKAGGVGLNLTAATRVFLMDPAWNPASEDQCFDRCHRLGQTEEVKVYKFVVKNTVEEKMLELQDKKRDMMKRTFGPKQSSKDRQK-MRIEDVQTLF 3101
PR TLI+CPLSV+ NW Q H++ L+ YVYYG DR + P L+K+D++LTTY L+ D+ +K D S LH + WLRV+LDEGH IRN + Q+KA + L SERRW +TGTP+QNS KDL+++L FL++ PF R +WW R I+RP+ + GG L LQ+++ NI++RRTK K+ K V++LP + +++Q+I +S+EERK+Y++ KNEG+A + RY E + A YA +L +L+RLRQ+CCH L + N P+G + TPE+L KL + + ++LSSG DEEC ICLD+ PVITHCAH++C+PCI VI+ ++P KCPLCRNDI ++ L++ E+ + + W+SSSK++ L+ L ++NP K LVVSQF FL+L+E P++ SG+ F RLDGSM K+R ++I F + SPTIMLLSLKAGGVGLNL+AA+RVFLMDPAWNPA+EDQCFDRCHRLGQ +EV + KF+VK++VEE ML++Q+KKR++ FG K+ + D K +I +++TL
Sbjct: 475 PRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYG--TKGD----SPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDR-EWWHRTIQRPVTMGDEGG-----LRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVSS-NGPSG--NDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEE---LARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLI 1007 HSP 2 Score: 271.166 bits (692), Expect = 5.458e-75 Identity = 139/295 (47.12%), Postives = 194/295 (65.76%), Query Frame = 3
Query: 78 IGDDDEEEEIYFGSFRGDVVGLRYYAGKVNNHEMVSLHREPNNPYDRNAIRVDNVLGQQVGHIKREQASVLASLVDGRKAKIEGVVPFGTKNKFTMPCDISLCGSPANQQYCKDLLRRRGYSLGMNSDNKRHADGSSASQSTSKGAPARPSYVAKTNSTKERVQMTGQQLEREIDTLFESTFDKGKQKIKEPSQSIKIPLYNHQKQALAWMVSRENNENLPPFWKRQGTNYNLSIVNHTTKEKPEIVKGGILADDMGLGKTLSIISLIVTNYRNEQPLVNIDKTSSVQQDIMKKK 962
+ D+E + + FGS RG VVGLRYY G VNN+EMV+L R+PNNPYD+NAI+V+NV G QVGH+K+E A LA ++D + A+IEGVVPFG N FTMP ++ G N++ D L++ G+ LG G + G A PSY ++ VQMT +QL+ E D LFE + K EP+++I+ PL HQKQALAWMVSREN++ LPPFW+++ Y +I N + K++PE V GGILADDMGLGKTL+ I++I+TN+ + +PL V+++++KK+
Sbjct: 49 LTSDEEVDSVLFGSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALAYIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTL----GFNLESGWGSGR-AGPSYSMPVHAA---VQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVILTNFHDGRPL----PIERVKKNLLKKE 331 The following BLAST results are available for this feature:
BLAST of TCONS_00028811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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