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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028750 ID=TCONS_00028750|Name=TCONS_00028750|organism=Clytia hemisphaerica|type=transcript|length=2237bp
ctttactttcagtgacattttaaaaaagaaaagaaaaaattcaaaattac
agAATTATGAAAGAATTAATATTTCAAGTCCCCATATCTGAAAAGGCCGT
CAACGTTCGAACGCTTTCATTAGACAACGCTGTCATGATTTGGGTAGGTG
AGACTAACGAATTCGATAAATTAAACATTGCCTCGATAAGTCAAGACAtg
aagatgacgtcatcggttgatttgattggtcaaaGTTCATTGACAATGAG
TCAAAAATTGTGCAAAAGATTGAAAAAGCAAGTGCTTCTAAGCTATAATG
TGGCGGAGGAGAATCTGTCGGAAGCTAGTCTAACTGAAGACTTGATTATG
AAAGGTATTATCAATCGATTGGCTGCGGATCAAGGCTAGATGGTGGAATC
AAAATGTTTGGAGTAGAGTCTAGCGgtgaaaaaattcttccaaTATGCTG
CTGTTGTTGAAATGAAGTCCATATTGTATGAGAATACCCCTTTCTACATT
ATCCCTTGTAAATATTATCTCACTTTAGTTTTGGTGAGCTCGGGAAGAGT
AACAACACGTGTATAAATGGCGCAATTCAAGCTtaaatatttcagaattt
tcGTTTTTAGTATTCTTAAGATATGTGCAAATTTTCTGAAGTGAAAATTC
TCTAAAATTCTGAAAAGGGTTTCGTCATTCATTATGCAGCCACTTTAGTT
TTAAACTTTTCTTGCTAAGGTGATACTTGTTGCGACTAGCTCATCAATAT
TAGTTTGGTCACCGGTCGGTCAATTGTGGCTGTTTCAAGTTCCCGggggg
tatgtccgagccaaagttcgaaGATTTGACTGAATTAGACGTTTTGCGAC
CCTTTGGAAACCATTTTTCCAATTGTTATTGTTAATTTAtcgtttttgta
cccctttgaaaGACTTTCCAGGATTTACCCTTTATAGCTTTCACATACCC
GACAACCATCTTGCccaagtaccccctccccccccaaGACTAATGCATTC
CTTACTTCTGTTAGCAGTCATTTCTGACCGTCCCTTTTAATCCATATTTC
ACTCATTATTAGCTGCCTTTAATTCATATTTCGTGTACGTTATTGGATTT
AATTTTCGTGGatattaattttagcgtttttcgcgtgTTTTTTTGGCCAa
accgcgaaatacaattttttccaattttatcaataagtttgaaaaatccc
taggaagatgaaagaaatttgtctaaaaagggcaaaaaccgtgaaaatta
aaacccgcgaaatgcaatttttccgatttttttttcgaccggGAATATTA
gtttccgcaaaaattagttccaataagatAGGTTTTATAATTCATAGAAG
TGTATCTCTCAGGTCTATCTTACATCGTTTTATATTCTGTTGTAGATTTT
TTGAATAAAGATAAGGCGAAATAACAATATGAAAACTAACGAGAAAGGAA
CGTTACCAGTAAATTCCCTTATAGAGGACCAAGATATATTTTACATGAAA
CAAGCTCTCAAGCTCTCCAAAGAAACTCTTGAAAGACGTGAAGTCCCTAT
CGCCTGTCTTATTGTTTACAAGAATAACGTCATTGCTCGTGGCTCTAACG
ACGTCAACCGTACGAAAAACGCTACACGGCACGCTGAGCTTTTGGCGATC
GAAGAGGTACGTGAATATGCAAAAACGGAATCACTAGACGTGACGCAAGT
TTTTAAAGACTCTACTTTATACGTGACAACGGAGCCTTGTGTTATGTGCG
CGGCCGCTTTAAGGCTAGTCGGTTTAACAAACGTTGTATACGGATGTGGG
AATCAACGTTTTGGAGGTTGCGGATCAAGGCTAGATGCTCATTCGAGGAT
GCCTAGGAACAATACTACAGAAGAAGTACCACCTGTTGCGAAACGATTAA
AAATGGACGCTCTATCTGGTAGTTGCTTGATTGCTATGGGTGATCCTTTA
GTTTGTCGGACAGGCATAATGGCGGATGAAGCTGTGAATATGTTGAAATT
ATTTTACGCCGGTGAGAATCCAAACGCGCCGAACCCGAAAGATAAGAGTG
GGCGAATGGAAGCATTAAGGAAAGAAAAAGAGAGTTGAGGATGTAAGCTA
CGTGAGTGAAAAGGTCATGGGCTGAAGACTGGTagatcattgagtttcaa
gccgaaggctagaggtcaatctccttggtaggatttgaagccaacaaatc
ctaccaaagttgcgcggccttgagcgacccgcctggt Run BLAST on NCBI transcript from alignment at sc0000703:136296..138532+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028750 ID=TCONS_00028750|Name=TCONS_00028750|organism=Clytia hemisphaerica|type=transcript|length=2237bp|location=Sequence derived from alignment at sc0000703:136296..138532+ (Clytia hemisphaerica)
ctttactttcagtgacattttaaaaaagaaaagaaaaaattcaaaattac
agAATTATGAAAGAATTAATATTTCAAGTCCCCATATCTGAAAAGGCCGT
CAACGTTCGAACGCTTTCATTAGACAACGCTGTCATGATTTGGGTAGGTG
AGACTAACGAATTCGATAAATTAAACATTGCCTCGATAAGTCAAGACAtg
aagatgacgtcatcggttgatttgattggtcaaaGTTCATTGACAATGAG
TCAAAAATTGTGCAAAAGATTGAAAAAGCAAGTGCTTCTAAGCTATAATG
TGGCGGAGGAGAATCTGTCGGAAGCTAGTCTAACTGAAGACTTGATTATG
AAAGGTATTATCAATCGATTGGCTGCGGATCAAGGCTAGATGGTGGAATC
AAAATGTTTGGAGTAGAGTCTAGCGgtgaaaaaattcttccaaTATGCTG
CTGTTGTTGAAATGAAGTCCATATTGTATGAGAATACCCCTTTCTACATT
ATCCCTTGTAAATATTATCTCACTTTAGTTTTGGTGAGCTCGGGAAGAGT
AACAACACGTGTATAAATGGCGCAATTCAAGCTtaaatatttcagaattt
tcGTTTTTAGTATTCTTAAGATATGTGCAAATTTTCTGAAGTGAAAATTC
TCTAAAATTCTGAAAAGGGTTTCGTCATTCATTATGCAGCCACTTTAGTT
TTAAACTTTTCTTGCTAAGGTGATACTTGTTGCGACTAGCTCATCAATAT
TAGTTTGGTCACCGGTCGGTCAATTGTGGCTGTTTCAAGTTCCCGggggg
tatgtccgagccaaagttcgaaGATTTGACTGAATTAGACGTTTTGCGAC
CCTTTGGAAACCATTTTTCCAATTGTTATTGTTAATTTAtcgtttttgta
cccctttgaaaGACTTTCCAGGATTTACCCTTTATAGCTTTCACATACCC
GACAACCATCTTGCccaagtaccccctccccccccaaGACTAATGCATTC
CTTACTTCTGTTAGCAGTCATTTCTGACCGTCCCTTTTAATCCATATTTC
ACTCATTATTAGCTGCCTTTAATTCATATTTCGTGTACGTTATTGGATTT
AATTTTCGTGGatattaattttagcgtttttcgcgtgTTTTTTTGGCCAa
accgcgaaatacaattttttccaattttatcaataagtttgaaaaatccc
taggaagatgaaagaaatttgtctaaaaagggcaaaaaccgtgaaaatta
aaacccgcgaaatgcaatttttccgatttttttttcgaccggGAATATTA
gtttccgcaaaaattagttccaataagatAGGTTTTATAATTCATAGAAG
TGTATCTCTCAGGTCTATCTTACATCGTTTTATATTCTGTTGTAGATTTT
TTGAATAAAGATAAGGCGAAATAACAATATGAAAACTAACGAGAAAGGAA
CGTTACCAGTAAATTCCCTTATAGAGGACCAAGATATATTTTACATGAAA
CAAGCTCTCAAGCTCTCCAAAGAAACTCTTGAAAGACGTGAAGTCCCTAT
CGCCTGTCTTATTGTTTACAAGAATAACGTCATTGCTCGTGGCTCTAACG
ACGTCAACCGTACGAAAAACGCTACACGGCACGCTGAGCTTTTGGCGATC
GAAGAGGTACGTGAATATGCAAAAACGGAATCACTAGACGTGACGCAAGT
TTTTAAAGACTCTACTTTATACGTGACAACGGAGCCTTGTGTTATGTGCG
CGGCCGCTTTAAGGCTAGTCGGTTTAACAAACGTTGTATACGGATGTGGG
AATCAACGTTTTGGAGGTTGCGGATCAAGGCTAGATGCTCATTCGAGGAT
GCCTAGGAACAATACTACAGAAGAAGTACCACCTGTTGCGAAACGATTAA
AAATGGACGCTCTATCTGGTAGTTGCTTGATTGCTATGGGTGATCCTTTA
GTTTGTCGGACAGGCATAATGGCGGATGAAGCTGTGAATATGTTGAAATT
ATTTTACGCCGGTGAGAATCCAAACGCGCCGAACCCGAAAGATAAGAGTG
GGCGAATGGAAGCATTAAGGAAAGAAAAAGAGAGTTGAGGATGTAAGCTA
CGTGAGTGAAAAGGTCATGGGCTGAAGACTGGTagatcattgagtttcaa
gccgaaggctagaggtcaatctccttggtaggatttgaagccaacaaatc
ctaccaaagttgcgcggccttgagcgacccgcctggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028750-exon-sc0000703-1491911889:136296..138532 | TCONS_00028750-exon-sc0000703-1491911889:136296..138532 | Clytia hemisphaerica | exon |
| TCONS_00028750-exon-sc0000703-1510915933:136296..138532 | TCONS_00028750-exon-sc0000703-1510915933:136296..138532 | Clytia hemisphaerica | exon |
| TCONS_00028750-exon-sc0000703-1575043694:136296..138532 | TCONS_00028750-exon-sc0000703-1575043694:136296..138532 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000703 | supercontig | sc0000703:136296..138532 + |
Blast
BLAST of TCONS_00028750 vs. Swiss-Prot (Human)
Match: ADAT2 (tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 1.979e-48 Identity = 86/184 (46.74%), Postives = 117/184 (63.59%), Query Frame = 1
Query: 1492 YMKQALKLSKETLERREVPIACLIVYKNNVIARGSNDVNRTKNATRHAELLAIEEVREYAKTESLDVTQVFKDSTLYVTTEPCVMCAAALRLVGLTNVVYGCGNQRFGGCGSRLD-AHSRMPRNNTTEEVPPVAKRLKMDALSGSCLIAMGDPLVCRTGIMADEAVNMLKLFYAGENPNAPNPK 2040
+M++A+ ++KE LE EVP+ CL+VY N V+ +G N+VN+TKNATRHAE++AI++V ++ + ++VF+ + LYVT EPC+MCAAALRL+ + VVYGC N+RFGGCGS L+ A + +P NT G P C G A+EAV MLK FY ENPNAP K
Sbjct: 25 WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLP--NT------------------------GRPFQCIPGYRAEEAVEMLKTFYKQENPNAPKSK 182
The following BLAST results are available for this feature:
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