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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028749 ID=TCONS_00028749|Name=TCONS_00028749|organism=Clytia hemisphaerica|type=transcript|length=1472bp
GATATGATGAAATGatgaaattaaataaacggCCCTCAAACATCGATGGA
CCAATAGAATTAAACTTCCTGTTCACCTTTTTAAAATGTAACTTGCATGA
TATTTATAGTATACGTTAAAAGAATTTGATCAGGCCGTTCTAAAAGACTT
TCACACATGGTATAAATACGAGCTATCCAATGCAGTTCAGCCAGTCAGTT
ATTAACTCGCATTAGTAAAtcgaaagaaattttgaacttcTGGAGGAACA
GAAACAACACGGATATAATGGATGAATTCCAGAACCAGGTAATCAATGAG
AcattgaaattcatcaaagagCAGGACAAGAATGCTTACCAACAATTAGA
AGATAATGCTTccatgaaaaatgacgtcatttcggCCATCAAAGAAGTCG
CTGAAGAGGTCTTTAAACTGGACCATGAGCTCAAAGATGTCCCCGACGAA
GGCGCCAAATTCATCCTTGAAAAGAATTTGTCTCAAGAACGAATGGACAT
GATCAAGAAAGGTCTTCAGATTCCAACCTTCAAGTTGAATCTTTCCAAAA
GTGTTTACGACGGAAGATACATGGCGTATTTCATGAAAGATGAAAACACC
CTTTTGAAAGCACCTCGTGTTTTAGATTCCATTCAAGCCGTTGACATGGT
GACTGCACAACAGTGCGGAAGTATTGTTGTAGAAGCAATAATGCTTACAA
TGGCTGCCTGTGGAATCCCGATCAGCCCTGGTCAATTTGGAATTCACCAG
GCCATCGAGACCGTAACTATGAACGCAACACCTGGTTACCCTCTTCACCG
GGCGGTAGAAGCATTCGTGAAGGCGTGGGATCAAGGCGATGTTTATAAAG
CAGCAAATCTCTTTGGTTTACTCAAAGCTACTCAAGTTCCCCCACAATTC
CCAATCATTGCATGGCCAACCATATTCTGGATGGTTATTTATGACCTTTG
TAGCGGAATGAGTTCACCACGACGATTAAAAATCATTGCTCGAGTACAAG
CGGAAATCGTCGCTGCATTGAACAGTGATGGAGCGAAAAAAAGAGTTTTG
ATTGTAAAGCTGGCTCAAGCGATTCCGGAAGCACATTACTTCAATCACAA
GGTCATGAATATGAATCAATTAGAGAAAATCAAAGCTGAGATTGAGCCAG
AGAAAAAACAAgaataattttgttttgaaaattatgaacaCATGGTTGAA
TTTATACCGATAGATTAACATTAAAAtcttatttcatatttttgttaACT
AGAGTTGTACTGCTATGCAGTTGTACTATCCATTATTATCACAAACTCTG
ATTCAGTTGAGCTGCTATTGTGTTTGACTTCAAGTTATCCTTTGAATCTC
ATATTTCTAGTTTGCTTAAGCTTAAACTTCTAGATCTATGTACTTgtaat
atttgcaaaatttacTGAACTCTATTTTTCATATCTTTTGTTGCTGTTGG
TGTAAATTAGATATTTATCTAT Run BLAST on NCBI protein sequence of TCONS_00028749-protein >TCONS_00028749-protein ID=TCONS_00028749-protein|Name=TCONS_00028749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MDEFQNQVINETLKFIKEQDKNAYQQLEDNASMKNDVISAIKEVAEEVFK
LDHELKDVPDEGAKFILEKNLSQERMDMIKKGLQIPTFKLNLSKSVYDGR
YMAYFMKDENTLLKAPRVLDSIQAVDMVTAQQCGSIVVEAIMLTMAACGI
PISPGQFGIHQAIETVTMNATPGYPLHRAVEAFVKAWDQGDVYKAANLFG
LLKATQVPPQFPIIAWPTIFWMVIYDLCSGMSSPRRLKIIARVQAEIVAA
LNSDGAKKRVLIVKLAQAIPEAHYFNHKVMNMNQLEKIKAEIEPEKKQE Run BLAST on NCBI transcript from alignment at sc0000703:104484..107032+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028749 ID=TCONS_00028749|Name=TCONS_00028749|organism=Clytia hemisphaerica|type=transcript|length=2549bp|location=Sequence derived from alignment at sc0000703:104484..107032+ (Clytia hemisphaerica)
GATATGATGAAATGatgaaattaaataaacggCCCTCAAACATCGATGGA
CCAATAGAATTAAACTTCCTGTTCACCTTTTTAAAATGTAACTTGCATGA
TATTTATAGTATACGTTAAAAGAATTTGATCAGGCCGTTCTAAAAGACTT
TCACACATGGTATAAATACGAGCTATCCAATGCAGTTCAGCCAGTCAGTT
ATTAACTCGCATTAGTAAAtcgaaagaaattttgaacttcTGGAGGAACA
GAAACAACACGGATATAATGGATGAATTCCAGAACCAGGtcagtgaaaaa
aattaaatcataaCTTTTACAATACCATGTGTGTTAGGagcttaaaaata
tttctatagtcactttttaattttgataaaattgaggAGGCATTAAACAG
GAGTCCGTTGCATTTACTGACCTCTAaaaaccctggaccaagctttatct
gtcatctttgatcggatgtttttttgaaagtgacgaaattttggacaact
gacaaatattttccccgacgaaaattttccccggccttaatgcgtttacc
aactaccagcaagtgacgaatttttcccgacgaaaatcttcaccgacgaa
aattttccccgacgaagttttccccgataaggtacccgtaaagaagccat
tgtgtCAAAACTTTGACTAACAAAAAACGGCATTATATCACTAGTATGCA
AgcaaaagtagatctagcgctgtCACTGTGGGTACCACTTCCAAAAGAAC
accaatcaattttttttgcttggccaGGATATCGGAGAAACTTTATCCAG
TGTCTAAGACCAGTGTCATTACAATAAAACTGTTTGCTTTGCGTTTGTCA
CAGACGAAGAATTCTGACGTCAGTTCTTCAAAGTAGAATCTGACCCAGTC
TCCTCAAACTTGTTGCCCACTCTCTAGCCCGGGTTccacttaaagttttt
tttatagactggattgCGCGATTAAGTAGCCGGTAGTATATGGTGATATG
CTTTGCTTAGTTATTTTTAGAAGgtaaaacagtatgaagcaatgttttta
ttttgagaataagggattgcaaatctgatgtttgtttctcatttttgatt
atatctttcaattccaaatagttttattgttatttggatttttaacattt
tttctcaaaatggcgacctcaccaaacgctcctagtctaactacttcact
ggactcagcgtcataaaaaattatcaaaaagcaaagttcagccaaaagtc
tagagtctactttttgatgaactttgctttttgataattttttatgacgt
tgAGTCCAGTACCCCCACACTCTAGATCTGAACTAAAAAAAGACCCTTTT
CATTCAATCTAATAGGTAATCAATGAGAcattgaaattcatcaaagagCA
GGACAAGAATGCTTACCAACAATTAGAAGATAATGCTTccatgaaaaatg
acgtcatttcggCCATCAAAGAAGTCGCTGAAGAGGTCTTTAAACTGGAC
CATGAGCTCAAAGATGTCCCCGACGAAGGCGCCAAATTCATCCTTGAAAA
GAATTTGTCTCAAGAACGAATGGACATGATCAAGAAAGGTCTTCAGATTC
CAACCTTCAAGTTGAATCTTTCCAAAAGTGTTTACGACGGAAGATACATG
GCGTATTTCATGAAAGATGAAAACACCCTTTTGAAAGCACCTCGTGTTTT
AGATTCCATTCAAGCCGTTGACATGGTGACTGCACAACAGTGCGGAAGTA
TTGTTGTAGAAGCAATAATGCTTACAATGGCTGCCTGTGGAATCCCGATC
AGCCCTGGTCAATTTGGAATTCACCAGGCCATCGAGACCGTAACTATGAA
CGCAACACCTGGTTACCCTCTTCACCGGGCGGTAGAAGCATTCGTGAAGG
CGTGGGATCAAGGCGATGTTTATAAAGCAGCAAATCTCTTTGGTTTACTC
AAAGCTACTCAAGTTCCCCCACAATTCCCAATCATTGCATGGCCAACCAT
ATTCTGGATGGTTATTTATGACCTTTGTAGCGGAATGAGTTCACCACGAC
GATTAAAAATCATTGCTCGAGTACAAGCGGAAATCGTCGCTGCATTGAAC
AGTGATGGAGCGAAAAAAAGAGTTTTGATTGTAAAGCTGGCTCAAGCGAT
TCCGGAAGCACATTACTTCAATCACAAGGTCATGAATATGAATCAATTAG
AGAAAATCAAAGCTGAGATTGAGCCAGAGAAAAAACAAgaataattttgt
tttgaaaattatgaacaCATGGTTGAATTTATACCGATAGATTAACATTA
AAAtcttatttcatatttttgttaACTAGAGTTGTACTGCTATGCAGTTG
TACTATCCATTATTATCACAAACTCTGATTCAGTTGAGCTGCTATTGTGT
TTGACTTCAAGTTATCCTTTGAATCTCATATTTCTAGTTTGCTTAAGCTT
AAACTTCTAGATCTATGTACTTgtaatatttgcaaaatttacTGAACTCT
ATTTTTCATATCTTTTGTTGCTGTTGGTGTAAATTAGATATTTATCTAT Coding sequence (CDS) from alignment at sc0000703:104484..107032+ >TCONS_00028749 ID=TCONS_00028749|Name=TCONS_00028749|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0000703:104484..107032+ (Clytia hemisphaerica)
ATGGATGAATTCCAGAACCAGGTAATCAATGAGAcattgaaattcatcaa
agagCAGGACAAGAATGCTTACCAACAATTAGAAGATAATGCTTccatga
aaaatgacgtcatttcggCCATCAAAGAAGTCGCTGAAGAGGTCTTTAAA
CTGGACCATGAGCTCAAAGATGTCCCCGACGAAGGCGCCAAATTCATCCT
TGAAAAGAATTTGTCTCAAGAACGAATGGACATGATCAAGAAAGGTCTTC
AGATTCCAACCTTCAAGTTGAATCTTTCCAAAAGTGTTTACGACGGAAGA
TACATGGCGTATTTCATGAAAGATGAAAACACCCTTTTGAAAGCACCTCG
TGTTTTAGATTCCATTCAAGCCGTTGACATGGTGACTGCACAACAGTGCG
GAAGTATTGTTGTAGAAGCAATAATGCTTACAATGGCTGCCTGTGGAATC
CCGATCAGCCCTGGTCAATTTGGAATTCACCAGGCCATCGAGACCGTAAC
TATGAACGCAACACCTGGTTACCCTCTTCACCGGGCGGTAGAAGCATTCG
TGAAGGCGTGGGATCAAGGCGATGTTTATAAAGCAGCAAATCTCTTTGGT
TTACTCAAAGCTACTCAAGTTCCCCCACAATTCCCAATCATTGCATGGCC
AACCATATTCTGGATGGTTATTTATGACCTTTGTAGCGGAATGAGTTCAC
CACGACGATTAAAAATCATTGCTCGAGTACAAGCGGAAATCGTCGCTGCA
TTGAACAGTGATGGAGCGAAAAAAAGAGTTTTGATTGTAAAGCTGGCTCA
AGCGATTCCGGAAGCACATTACTTCAATCACAAGGTCATGAATATGAATC
AATTAGAGAAAATCAAAGCTGAGATTGAGCCAGAGAAAAAACAAgaataa
ATGGATGAATTCCAGAACCAGGTAATCAATGAGAcattgaaattcatcaa
agagCAGGACAAGAATGCTTACCAACAATTAGAAGATAATGCTTccatga
aaaatgacgtcatttcggCCATCAAAGAAGTCGCTGAAGAGGTCTTTAAA
CTGGACCATGAGCTCAAAGATGTCCCCGACGAAGGCGCCAAATTCATCCT
TGAAAAGAATTTGTCTCAAGAACGAATGGACATGATCAAGAAAGGTCTTC
AGATTCCAACCTTCAAGTTGAATCTTTCCAAAAGTGTTTACGACGGAAGA
TACATGGCGTATTTCATGAAAGATGAAAACACCCTTTTGAAAGCACCTCG
TGTTTTAGATTCCATTCAAGCCGTTGACATGGTGACTGCACAACAGTGCG
GAAGTATTGTTGTAGAAGCAATAATGCTTACAATGGCTGCCTGTGGAATC
CCGATCAGCCCTGGTCAATTTGGAATTCACCAGGCCATCGAGACCGTAAC
TATGAACGCAACACCTGGTTACCCTCTTCACCGGGCGGTAGAAGCATTCG
TGAAGGCGTGGGATCAAGGCGATGTTTATAAAGCAGCAAATCTCTTTGGT
TTACTCAAAGCTACTCAAGTTCCCCCACAATTCCCAATCATTGCATGGCC
AACCATATTCTGGATGGTTATTTATGACCTTTGTAGCGGAATGAGTTCAC
CACGACGATTAAAAATCATTGCTCGAGTACAAGCGGAAATCGTCGCTGCA
TTGAACAGTGATGGAGCGAAAAAAAGAGTTTTGATTGTAAAGCTGGCTCA
AGCGATTCCGGAAGCACATTACTTCAATCACAAGGTCATGAATATGAATC
AATTAGAGAAAATCAAAGCTGAGATTGAGCCAGAGAAAAAACAAgaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028749-exon-sc0000703-1491911889:104484..104771 | TCONS_00028749-exon-sc0000703-1491911889:104484..104771 | Clytia hemisphaerica | exon |
| TCONS_00028749-exon-sc0000703-1510915933:104484..104771 | TCONS_00028749-exon-sc0000703-1510915933:104484..104771 | Clytia hemisphaerica | exon |
| TCONS_00028749-exon-sc0000703-1575043694:104484..104771 | TCONS_00028749-exon-sc0000703-1575043694:104484..104771 | Clytia hemisphaerica | exon |
| TCONS_00028749-exon-sc0000703-1491911889:105849..107032 | TCONS_00028749-exon-sc0000703-1491911889:105849..107032 | Clytia hemisphaerica | exon |
| TCONS_00028749-exon-sc0000703-1510915933:105849..107032 | TCONS_00028749-exon-sc0000703-1510915933:105849..107032 | Clytia hemisphaerica | exon |
| TCONS_00028749-exon-sc0000703-1575043694:105849..107032 | TCONS_00028749-exon-sc0000703-1575043694:105849..107032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000703 | supercontig | sc0000703:104484..107032 + |
Blast
The following BLAST results are available for this feature:
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