TCONS_00028742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028742
Unique NameTCONS_00028742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028742 ID=TCONS_00028742|Name=TCONS_00028742|organism=Clytia hemisphaerica|type=transcript|length=339bp
CTTGAGGAAAACATCCAAATGAGGGGGCAATATTTAAGATGACAAAGGAT
GTATGAGTTGCAGAGTGTGAGGGCTTTTTCGGGATTCAAATATTTCCTTA
TCCTCTGAAGAGCTGTAGTATTCCTACTTACAGTAGAACATATTTTGTCT
ACATGTTGGTTAAAATTCAGtttctcatcaaaaataatTCCTAGTATATA
GCaaaactgaattttttgcttttatagTAACATTCTTATACTTGATTGAA
ATATTAGAgttatcaatattttttcctAACAGCATCATTTGGAATTTTCC
TGGGTTTGCAACAAGATAGTTGGATTCGAACCAAGATAT
Run BLAST on NCBI

transcript from alignment at sc0000700:174639..174977

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028742 ID=TCONS_00028742|Name=TCONS_00028742|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at sc0000700:174639..174977 (Clytia hemisphaerica)
ATATCTTGGTTCGAATCCAACTATCTTGTTGCAAACCCAGGAAAATTCCA
AATGATGCTGTTaggaaaaaatattgataacTCTAATATTTCAATCAAGT
ATAAGAATGTTActataaaagcaaaaaattcagttttGCTATATACTAGG
AattatttttgatgagaaaCTGAATTTTAACCAACATGTAGACAAAATAT
GTTCTACTGTAAGTAGGAATACTACAGCTCTTCAGAGGATAAGGAAATAT
TTGAATCCCGAAAAAGCCCTCACACTCTGCAACTCATACATCCTTTGTCA
TCTTAAATATTGCCCCCTCATTTGGATGTTTTCCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016305XLOC_016305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028742-exon-sc0000700-1491911889:174639..174977TCONS_00028742-exon-sc0000700-1491911889:174639..174977Clytia hemisphaericaexon
TCONS_00028742-exon-sc0000700-1510915933:174639..174977TCONS_00028742-exon-sc0000700-1510915933:174639..174977Clytia hemisphaericaexon
TCONS_00028742-exon-sc0000700-1575043694:174639..174977TCONS_00028742-exon-sc0000700-1575043694:174639..174977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000700supercontigsc0000700:174639..174977 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.86446	9.94975	2.95617	3.25472	0.373645	0.290819	0.701721	2.02429	0.919882	0.854567	0.356327	0	0.396486	0	0	1.28153	1.02434	1.67986	0.316475	1.29461	1.84383	1.78544	3.71642	2.8208	0.586009	1.58418	3.37386	3.32716	1.81741	1.44209
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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