TCONS_00028720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028720
Unique NameTCONS_00028720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028720 ID=TCONS_00028720|Name=TCONS_00028720|organism=Clytia hemisphaerica|type=transcript|length=406bp
TGGCTTTTTTTGTATATCTTGGAATCATGAAAAAAGACAAGGAGAGCAAA
AAGAGTAAGGCCAACGGAGAATTGGTTTTAGATGAGATAACAGGCGACAA
AACAGATCTTCGATTACTCAAAGAACAGGGCATCACTTATCCAAAATCCG
AAAGAAAATGTCTACCTTCTGCTAGAGATAAatatcattttagtttaatt
tcATTCTTACGTACAACAATAGGCAAGGATTTAACAAAAGTTCCGATGCC
TGTATTTTTCAATGAACCTTTATCATTTTTACAGAGATTAACTGAAGATT
TAGAATATGCAAATTTACTGAATAAAGCTGCAGACTGTGAATGTCCTGTA
GAAAGATTAGTTTACGTTTCCGCATTCGCAAGCTCAAATTACGCAAATGT
ACCTGG
Run BLAST on NCBI

transcript from alignment at sc0000700:61498..63985+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028720 ID=TCONS_00028720|Name=TCONS_00028720|organism=Clytia hemisphaerica|type=transcript|length=2488bp|location=Sequence derived from alignment at sc0000700:61498..63985+ (Clytia hemisphaerica)
TGGCTTTTTTTGTATATCTTGGAATCATGAAAAAAGACAAGGAGAGCAAA
AAGGTATGATGTAATTCTCATTTTCACCCTAAAGGTATAACAACCCACAT
TACCATCTCTCAGTGTTCCCAGCTTCTTTTATCATTTTGGTTTTTTAAAT
ACATAGATTATTATTATAGCCACTTTTAGTATGGTTTGACATTGACAAAA
GGGAACGGCTTATTTTTATCAATCTTTCTTTTATTAACTCTCTCTCATTC
AATAGGTAGCGATTATAAACgaatcacttttaaaaaaaaggttcAGGGTT
TTCTCTGTGCTTAAAAACTGACATCCAAAATTGTTGTCNAAAAAAAAAAG
TTCAGGGTTTTCTCTGTGCTTAAAAACTGACATTCAAAATTGTTGTCATT
CTTGGAGagtttttttgcttattatGTCAAGTCTTATGATATATGCTGGT
ACATGAAGcttgaaaattctttcaaatcatTGTTGGGAGACTGTCAGAAC
TTAGACAAGCCTTGATCTTGCTTTGATTTTGAGTTTTGGTaattggtttt
gaaaatttgagagaTTGGAAATTGGAAAACCTCTCTTTTCTAAAGATGGT
TAGTATATAGGAAATAAGTGCTTAGAAATAAGAATGAATGAGTCTTTCGT
GATTCTAAAACATACTGCAGATGTGCCTTCTTATCTTTTTCTAATGCATG
TAGTTGTCGCAAATATTAATCAAATATTCCTGAAAGCCTTTACAGTAAAC
ACTGGGTCCAAATGAAATTTATCTTCAAAAAAGTCAAGACTCTATGGCTA
GGTCCCTGAGCCTCTGTTTATTCAATGAACGAGAGGTAATTCCATTTTCC
TGCTTTTTTCATCACCAGAGTAAGGCCAACGGAGAATTGGTTTTAGATGA
GATAACAGGCGACAAAACAGATCTTCGATTACTCAAAGAACAGGGCATCA
CTTATCCAAAATCCGAAAGAAAATGTCTACCTTCTGCTAGAGATAAatat
cattttagtttaatttcgTAAGTAAggttttttactcattttgagAAATC
GTGGAAGATTTTTTTAACACCACCTTGAGGCTTCTTGATACGAATATCGT
TATATATACTGATCATTCAAAAACTACATTTAAAAGTTATGGCTGGAATT
TGATATAATATACTCTGAATAACGAATGATAGGATACTAATTTGAATATT
CGAGTGTGAGATTCTGAACAGTTTTTGGCAATTATCATTTTGAGATCTgt
taaattttttcttcttttttttgccaGATTCTTACGTACAACAATAGGCA
AGGATTTAACAAAAGTTCCGATGCCTGTATTTTTCAATGAACCTTTATCA
TTTTTACAGGTAATTATTGAatcattttctcattttctctCCCTTTTTGC
AGTTTTCCTACAATTTTTAGCCTATGCATACGCTTTTTATTGGCAATCAT
TCCATGCCTATTTTGCATTGCCaatcacttttaattgaaattaCTTCATA
TTAAAGTAAAACATGCTTATATTTGTTAAAAAACTTTGATCACGAGGTAT
TGttataaatttagaaaaatcatcATTTGGCTTGACAATATTCCTTTTAT
TTCTGTGTTGCTGATTATGCACAAAAATTCCTAGTATTCATCAACTTTGT
TTTTACAGAGATTAACTGAAGATTTAGAATATGCAAATTTACTGAATAAA
GCTGCAGGTACTTTGTTGTTTTGCCTGTATAATCCTACTATATTTATTTG
CTTTATTAAGACTTTACGTTTTGGGATTGGATTCCAAATACATAAGGGCT
TAAATACTTTAGAGATATTATCTTTGCTTACGTGATTCTTGTGGAGAACT
GTAACTTCAAATCACCTTATCTGGAGACATGATTAAGCTGCCTTAAGTGT
GCAGAAGTGATAGATGATTCTGATCATTTTCGGCCTCGAGATATTTTTAG
ATTCGTTTTACGTGATTCAGTCGCTAATAttagaaaatttcaagttttga
atgaaaataagcTTTTCTAGATTCAATATTTTTCCTCTCAATAGTTATCG
TTCCATTTTCATTTCGTAATAACTTGATAAAAAGGAAACTAAATGATATT
TTCCCCTTGATTTATTCTATTTAAAGTCATTTTCGGTGTTAATGACCTAG
TTCAATCTCATCCTGATATGGGCCGtttgaaattatcaaaatgaatAATT
GATTTGTCCCTTTTCTTTATATCCGAGGTTTAAATTACAGGGGATCGATC
CCGGGCCCTTCAAGTCCAAATTCTAAATATTTATCATAAAGTAAATTGAG
CCTTACGGAAATAGTGTTATAAATTAGCCTAAAGTTTGATTCGGATATGC
AAGTTAACCGATAATAACAAGGATTTAGTGCTTGAtttaaattcttcttt
ttcgttcttttacAGACTGTGAATGTCCTGTAGAAAGATTAGTTTACGTT
TCCGCATTCGCAAGCTCAAATTACGCAAATGTACCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016291XLOC_016291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028720-exon-sc0000700-1491911889:61498..61550TCONS_00028720-exon-sc0000700-1491911889:61498..61550Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1510915933:61498..61550TCONS_00028720-exon-sc0000700-1510915933:61498..61550Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1575043694:61498..61550TCONS_00028720-exon-sc0000700-1575043694:61498..61550Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1491911889:62366..62514TCONS_00028720-exon-sc0000700-1491911889:62366..62514Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1510915933:62366..62514TCONS_00028720-exon-sc0000700-1510915933:62366..62514Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1575043694:62366..62514TCONS_00028720-exon-sc0000700-1575043694:62366..62514Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1491911889:62775..62856TCONS_00028720-exon-sc0000700-1491911889:62775..62856Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1510915933:62775..62856TCONS_00028720-exon-sc0000700-1510915933:62775..62856Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1575043694:62775..62856TCONS_00028720-exon-sc0000700-1575043694:62775..62856Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1491911889:63156..63204TCONS_00028720-exon-sc0000700-1491911889:63156..63204Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1510915933:63156..63204TCONS_00028720-exon-sc0000700-1510915933:63156..63204Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1575043694:63156..63204TCONS_00028720-exon-sc0000700-1575043694:63156..63204Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1491911889:63913..63985TCONS_00028720-exon-sc0000700-1491911889:63913..63985Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1510915933:63913..63985TCONS_00028720-exon-sc0000700-1510915933:63913..63985Clytia hemisphaericaexon
TCONS_00028720-exon-sc0000700-1575043694:63913..63985TCONS_00028720-exon-sc0000700-1575043694:63913..63985Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000700supercontigsc0000700:61498..63985 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.48594	4.50367	1.54427	0.784328	8.83745	1.58409	23.8153	16.9208	1.21551	7.05662	2.27353	1.61975	4.98359	3.64847	13.3709	17.9887	3.42434	7.8745	17.9967	12.0056	19.2094	16.8928	12.3095	11.0375	0	0	47.9032	29.96	24.2193	26.9317
Blast
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BLAST of TCONS_00028720 vs. Swiss-Prot (Human)
Match: OSBP1 (Oxysterol-binding protein 1 OS=Homo sapiens GN=OSBP PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.234e-23
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 3 
Query:   87 ITGDKTDLRLLKE--QGITYPKSERKCLPSARDKYHFSLISFLRTTIGKDLTKVPMPVFFNEPLSFLQRLTEDLEYANLLNKAADCECPVERLVYVSAFASSNYANV 401
            I+G  +D+ L ++    +   K E++     +  Y  +L S ++  IGK+L+K+PMPV FNEPLS LQRLTEDLEY  LL++AA CE  +E+L YV+AF  S+Y+  
Sbjct:  381 ISGASSDISLDEQYKHQLEETKKEKRTRIPYKPNYSLNLWSIMKNCIGKELSKIPMPVNFNEPLSMLQRLTEDLEYHELLDRAAKCENSLEQLCYVAAFTVSSYSTT 487
The following BLAST results are available for this feature:
BLAST of TCONS_00028720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OSBP14.234e-2344.86Oxysterol-binding protein 1 OS=Homo sapiens GN=OSB... [more]
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