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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028708 ID=TCONS_00028708|Name=TCONS_00028708|organism=Clytia hemisphaerica|type=transcript|length=416bp
gaagaaaataatatttttcattcaaattttggtGGTGCTTGGCTCAACCA
GTTCGACCAGCGAAGTAGGAAATAAAGAAGCAGCTTTAGACACgaaaaac
aatccaaaaAAAACTCTTGTTCATTCGTCTGCTTCCACTTGTCGAGCGGG
TCGAGACGGTCGAGCGGGTCGAGACGGTCGTGATGGCTTGAACGGGTCAC
CTGGACGAGACGGGGAAGATGGATGCCCGGGACAAGACGGCAAAGACGGA
CTACCTGGCGTCAGAGGGCCAGAAGGTGTTCAAGGTATCCAAGGCCGTCC
TGGGTCAAATGGAACCAAAGGAGACCAAGGTGTTCCAGGAAAAGATGGCA
AAGACGGTATCAATGGAGTTCCTGGGGTAAATGGAAGAAAGGGCGAGCAA
GGCCCTCCTGGAAAGG Run BLAST on NCBI protein sequence of TCONS_00028708-protein >TCONS_00028708-protein ID=TCONS_00028708-protein|Name=TCONS_00028708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
KKIIFFIQILVVLGSTSSTSEVGNKEAALDTKNNPKKTLVHSSASTCRAG
RDGRAGRDGRDGLNGSPGRDGEDGCPGQDGKDGLPGVRGPEGVQGIQGRP
GSNGTKGDQGVPGKDGKDGINGVPGVNGRKGEQGPPGK Run BLAST on NCBI transcript from alignment at sc0000698:140489..142953+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028708 ID=TCONS_00028708|Name=TCONS_00028708|organism=Clytia hemisphaerica|type=transcript|length=2465bp|location=Sequence derived from alignment at sc0000698:140489..142953+ (Clytia hemisphaerica)
gaagaaaataatatttttcattcaaattttggtGGTGCTTGGCTCAACCA
GTTCGACCAGCGAAGTAGGAAATAAAGAAGCAGCTTTAGACACgaaaaac
aatccaaaagtAAGTTCTTTGAATTTTACAATCTTCATTGTGTTATTAAC
ACTTACCCTGACTATCAGAGGTTaggttttcaaagaatatattaacctcg
gGAGACCAatattataaattttatcgcgcatgtgtcaatctaatcactgt
agaaagaatcacaGATGAAGAgcactgaatagaatctcgattcgtcggca
cagcgtcgatatatgattcgacctgtgcttttcacggtaattaACACGAG
CTTGGCCAGTGGGTTCGACTGACAATCCCTGCAttaataacacgcatgcg
taatttgtcatTCTTTTAGACCACACGTAGCTatttcccgtgataaacaa
agacaaatgaatcgctaggggtggtacagtcactttcggtcggggaatat
aaaatatgaaatttgtcgttcttttttgtcgtttttttatgaaatttgtc
gttccaaaataaatttcattctGAGAAAATTCTTACGgcgatccgccaaa
ttaaattctcgcctaaATTCAttctttaagggctctgaccatagtgaatt
tttcataattgccgtgtttaaaatgtgttttctgactgatgtaaccaaca
aaactatggcatgttatacattttctgttagaaaaactattcctgaatct
gaaaattcaaaaattgcattgaaaaaatttgaNNgtatgaaaattttttc
gcagtagatggtgtatcttttaccgaacaataaaaatttttgcagacaat
ttttgtaaatgcttttttgtctcgaaatcttcaaaatagtggtttttcat
caatttttcatctggattttgcttaataaaacagtcataactttttacAT
ATCTTTTTAGAacaattttccgcaaaatttaaaatagttcaattctttgc
ggacagtttgaaaaaacttcgaaacaaaaaggttaattacccattaaaac
ttagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacgtctttttaaagttcata
acgtcatttttgcaattaagttcttaattactcttaagggatttgattaa
aaagcaatttataaaggcaattctttgttacaagtgttaaagaatctaaa
acataagtttcatgttcaaatactaaaatcaattttccgactatggtcag
agcccttaaggaaaaatatttcaatggaTTACTTCGAGGTTGGTCTTGGA
GACTTGTGAGCCGCCACTGGCTCTGTGGAGTATATGCACATACACTAAAC
TTTAATGACTTTTATACCCGCATCcgcaaaatatcaaaagatgatcatca
aaaatagcaaagatATTTTTATTGTGTCTAGGAACTTTTTGCTACAACAC
ATATTCAATCTTTCCTAGCAATCTTCTATTCTTTTTCATTAGAAAACTCT
TGTTCATTCGTCTGCTTCCACTTGTCGAGCGGGTCGAGACGGTCGAGCGG
GTCGAGACGGTCGTGATGGCTTGAACGGGTCACCTGGACGAGACGGGGAA
GATGGATGCCCGGGACAAGACGGCAAAGACGGACTACCTGGCGTCAGAGG
GCCAGAAGGTGTTCAAGGTATCCAAGGCCGTCCTGGGTCAAATGGAACCA
AAGGAGACCAAGGTGTTCCAGGAAAAGGTAAATGTGAAAGATTCGTATTC
TATTGGTCTTAGTATTAGATGttaatcataaaaaatgaaacttgaaaaaa
aaacgagaaaaaaaaaagcaacTTCAGGCTAAAAATGATTTGAGTGCAAA
ATCAGAGCAAACGTATGTAATTGATTTAAAGGAATTAGCAAAAAGTAAGC
TGCACACATCCTCTCGGGTATGATTGGATATATACGTATTTTTTGAATGG
TCCTAAACGcaaaaacgggggggggggggcaaactNAAAGCATGTAtgta
attaattttaaagagatCAGTAAAAAGTAAGCTGCGCGCATTCTCTCGGA
TATGATCGGATATATGTACGTAATTTTTGAATGGTCCTAAACGCAAAAAC
GGTGGGGGGGGACTCTCGAACGGGAATTTTACATACgttatcaaaacata
tcagaggatATCTTTTTGACTTACTCGTACTCTTTTTATAACACATATAA
GATTCCGTTATACTGAAAgtaatcaaataaatttcattatTAGATGGCAA
AGACGGTATCAATGGAGTTCCTGGGGTAAATGGAAGAAAGGGCGAGCAAG
GCCCTCCTGGAAAGG Coding sequence (CDS) from alignment at sc0000698:140489..142953+ >TCONS_00028708 ID=TCONS_00028708|Name=TCONS_00028708|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at sc0000698:140489..142953+ (Clytia hemisphaerica)
aagaaaataatatttttcattcaaattttggtGGTGCTTGGCTCAACCAG
TTCGACCAGCGAAGTAGGAAATAAAGAAGCAGCTTTAGACACgaaaaaca
atccaaaaAAAACTCTTGTTCATTCGTCTGCTTCCACTTGTCGAGCGGGT
CGAGACGGTCGAGCGGGTCGAGACGGTCGTGATGGCTTGAACGGGTCACC
TGGACGAGACGGGGAAGATGGATGCCCGGGACAAGACGGCAAAGACGGAC
TACCTGGCGTCAGAGGGCCAGAAGGTGTTCAAGGTATCCAAGGCCGTCCT
GGGTCAAATGGAACCAAAGGAGACCAAGGTGTTCCAGGAAAAGATGGCAA
AGACGGTATCAATGGAGTTCCTGGGGTAAATGGAAGAAAGGGCGAGCAAG
GCCCTCCTGGAAAGaagaaaataatatttttcattcaaattttggtGGTG
CTTGGCTCAACCAGTTCGACCAGCGAAGTAGGAAATAAAGAAGCAGCTTT
AGACACgaaaaacaatccaaaaAAAACTCTTGTTCATTCGTCTGCTTCCA
CTTGTCGAGCGGGTCGAGACGGTCGAGCGGGTCGAGACGGTCGTGATGGC
TTGAACGGGTCACCTGGACGAGACGGGGAAGATGGATGCCCGGGACAAGA
CGGCAAAGACGGACTACCTGGCGTCAGAGGGCCAGAAGGTGTTCAAGGTA
TCCAAGGCCGTCCTGGGTCAAATGGAACCAAAGGAGACCAAGGTGTTCCA
GGAAAAGATGGCAAAGACGGTATCAATGGAGTTCCTGGGGTAAATGGAAG
AAAGGGCGAGCAAGGCCCTCCTGGAAAGaagaaaataatatttttcattc
aaattttggtGGTGCTTGGCTCAACCAGTTCGACCAGCGAAGTAGGAAAT
AAAGAAGCAGCTTTAGACACgaaaaacaatccaaaaAAAACTCTTGTTCA
TTCGTCTGCTTCCACTTGTCGAGCGGGTCGAGACGGTCGAGCGGGTCGAG
ACGGTCGTGATGGCTTGAACGGGTCACCTGGACGAGACGGGGAAGATGGA
TGCCCGGGACAAGACGGCAAAGACGGACTACCTGGCGTCAGAGGGCCAGA
AGGTGTTCAAGGTATCCAAGGCCGTCCTGGGTCAAATGGAACCAAAGGAG
ACCAAGGTGTTCCAGGAAAAGATGGCAAAGACGGTATCAATGGAGTTCCT
GGGGTAAATGGAAGAAAGGGCGAGCAAGGCCCTCCTGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028708-exon-sc0000698-1491911889:140489..140597 | TCONS_00028708-exon-sc0000698-1491911889:140489..140597 | Clytia hemisphaerica | exon |
| TCONS_00028708-exon-sc0000698-1510915933:140489..140597 | TCONS_00028708-exon-sc0000698-1510915933:140489..140597 | Clytia hemisphaerica | exon |
| TCONS_00028708-exon-sc0000698-1575043694:140489..140597 | TCONS_00028708-exon-sc0000698-1575043694:140489..140597 | Clytia hemisphaerica | exon |
| TCONS_00028708-exon-sc0000698-1491911889:142131..142365 | TCONS_00028708-exon-sc0000698-1491911889:142131..142365 | Clytia hemisphaerica | exon |
| TCONS_00028708-exon-sc0000698-1510915933:142131..142365 | TCONS_00028708-exon-sc0000698-1510915933:142131..142365 | Clytia hemisphaerica | exon |
| TCONS_00028708-exon-sc0000698-1575043694:142131..142365 | TCONS_00028708-exon-sc0000698-1575043694:142131..142365 | Clytia hemisphaerica | exon |
| TCONS_00028708-exon-sc0000698-1491911889:142882..142953 | TCONS_00028708-exon-sc0000698-1491911889:142882..142953 | Clytia hemisphaerica | exon |
| TCONS_00028708-exon-sc0000698-1510915933:142882..142953 | TCONS_00028708-exon-sc0000698-1510915933:142882..142953 | Clytia hemisphaerica | exon |
| TCONS_00028708-exon-sc0000698-1575043694:142882..142953 | TCONS_00028708-exon-sc0000698-1575043694:142882..142953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000698 | supercontig | sc0000698:140489..142953 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008160 | Collagen |
Blast
The following BLAST results are available for this feature:
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