|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028705 ID=TCONS_00028705|Name=TCONS_00028705|organism=Clytia hemisphaerica|type=transcript|length=2812bpRun BLAST on NCBI transcript from alignment at sc0000698:115546..130387+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028705 ID=TCONS_00028705|Name=TCONS_00028705|organism=Clytia hemisphaerica|type=transcript|length=14842bp|location=Sequence derived from alignment at sc0000698:115546..130387+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00028705 vs. Swiss-Prot (Human)
Match: DAAM1 (Disheveled-associated activator of morphogenesis 1 OS=Homo sapiens GN=DAAM1 PE=1 SV=2) HSP 1 Score: 382.104 bits (980), Expect = 2.900e-115 Identity = 202/470 (42.98%), Postives = 300/470 (63.83%), Query Frame = 1
Query: 1132 FNWTKIPDVKLKGTIFSDLDENQIIPLLDFKRIDKAFSAYQKKE--------KDPEQDQEDGGSVLNFKPKELSFIDNRRAQNCQIMLKNVNQPNEVIREAVCTMDVEDRLTRDMVEQMLKFIPTPDEANLFNTHANESHQFAAGDSYLYEMSKIPHFEQRLKALYYQKGFSERVGDIKPKIECVIRACKQVSRSKRLKTLFEVILCFGNYMNKGSRANASGFKVSSLNKIIDTKSSSDKRVTLLHFIITVLEMKFPSVFQLEEELPDIRSAAKVNPAELTKELQLLRAGIVEIEKELQYQSTLKKKDRLPNDRFVETVGSFVKVANFSIQEVDEIYKEMEDRLVKTFSLFGEDPKSTAGEDFFGVFNGFLNSFAESKGEN---VXXXXXXXXXXXXXXSLAQQREKERQRSAAKKLMSDNLSAEDKRKSLSERSPGEFDDLISALRTGDVFGDEMTMFSKQGRKRTGKQ 2508
FNW+K+P+ KL+GT+++++D+ ++ +LD + +++ FSAYQ+++ K E D D K KELS ID RRAQNC I+L + N+ I+ A+ TMD ++ L +DM+EQ+LKF+P + +L H +E + A D +L+EMS+I H++QRL++LY++K F+ERV ++KPK+E + ++V RS LK L EV+L FGNYMNKG R NA GFK+SSLNKI DTKSS DK +TLLH++IT++E K+PSV L EEL DI AAKVN EL KE+ LR+G+ +E EL+YQ K + P D+FV V F+ VA+FS +V+++ E +D K FGE+ ++FFG+F+ FL + +E+K EN + ++++E R L +QRE+ER+ AK+ + GEFDDL+SALR+G+VF +++ K+ RKR Q
Sbjct: 613 FNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQRGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQ---KSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKE---------------NSEESGEFDDLVSALRSGEVFDKDLSKL-KRNRKRITNQ 1063 HSP 2 Score: 96.2857 bits (238), Expect = 4.332e-20 Identity = 62/210 (29.52%), Postives = 117/210 (55.71%), Query Frame = 1
Query: 253 HLDFFDMVRNEDEKELTKRYGVQQIDAKSASSMLDVLKQKIGHTPSYVHXXXXXXXXXXXPVD-AKKGLSYWRIIDRIIQEIALQQRDGTDPDMAPIDIHVKHIIEKMTTEDFKDDTVSKLAKRESEMAEMRSTVEKMADKLDXXXXXXXXXXXXCD-------ELINKAKKLEQQLNVEMVSRMKLEEVVKEVGASIPDDAKIANLASM 858
HLDFF+M+RNEDE E KR+ + ID KSA+ M ++ ++++ H+ +Y H +SI+ H L +P + + YW ++DRIIQ+I +Q G DPD P+ E+F V ++ E+E+ + + EKM + ++ ++ E+ ++ CD E++ K++++L E ++++ V ++ A + + ++ A AS+
Sbjct: 331 HLDFFEMLRNEDELEFAKRFELVHIDTKSATQMFELTRKRLTHSEAYPHFMSILHHCLQMPYKRSGNTVQYWLLLDRIIQQIVIQNDKGQDPDSTPL-------------ENFNIKNVVRMLVNENEVKQWKEQAEKMRKEHNELQQKLEKKERECDAKTQEKEEMMQTLNKMKEKLEKETTEHKQVKQQVADLTAQLHELSRRAVCASI 527 The following BLAST results are available for this feature:
BLAST of TCONS_00028705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.