TCONS_00028689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028689
Unique NameTCONS_00028689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028689 ID=TCONS_00028689|Name=TCONS_00028689|organism=Clytia hemisphaerica|type=transcript|length=495bp
ACTGTAACTACTTTTCCAACCAGATAGTTGCTATAGCCAGATTAGACAAA
GTATGGCAACATTACACAAAGTTACAGTAATATCAATCTACGTTTttcta
aaatcgatttgtgagtgactccttaacaacaacaacaatgaCTCAAAATT
TCTGCAACATAGACATagggcgctgtggtatagtcgTCATTGGCCTTGGT
TGCTGCACCACCGCTGTTTCAAAGTGAAATAACAAACCTACAAAAACAGG
AATCAACACACTTTGccatttttaattttgcaaataAATCCAGTGAAGTT
ACCGTTCACTTTCGATATCAGGGATATCGCACTGTGTTGCTGTATTTTAA
TGCACTGTGTTGCTGTATATTCTGCTTTTTCGCTCACAGTATAGTAAAGG
GGCGCTGATTGGATCAATATTTCCGCCCCATATTTCTCAGTATTAATCTG
GGACAGGGGCTCATTATTCTTTTCATAATCATGTTTTGCtgctaa
Run BLAST on NCBI

transcript from alignment at sc0000697:10623..11117

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028689 ID=TCONS_00028689|Name=TCONS_00028689|organism=Clytia hemisphaerica|type=transcript|length=495bp|location=Sequence derived from alignment at sc0000697:10623..11117 (Clytia hemisphaerica)
ttagcaGCAAAACATGATTATGAAAAGAATAATGAGCCCCTGTCCCAGAT
TAATACTGAGAAATATGGGGCGGAAATATTGATCCAATCAGCGCCCCTTT
ACTATACTGTGAGCGAAAAAGCAGAATATACAGCAACACAGTGCATTAAA
ATACAGCAACACAGTGCGATATCCCTGATATCGAAAGTGAACGGTAACTT
CACTGGATTtatttgcaaaattaaaaatggCAAAGTGTGTTGATTCCTGT
TTTTGTAGGTTTGTTATTTCACTTTGAAACAGCGGTGGTGCAGCAACCAA
GGCCAATGAcgactataccacagcgccctATGTCTATGTTGCAGAAATTT
TGAGtcattgttgttgttgttaaggagtcactcacaaatcgattttagaa
AAACGTAGATTGATATTACTGTAACTTTGTGTAATGTTGCCATACTTTGT
CTAATCTGGCTATAGCAACTATCTGGTTGGAAAAGTAGTTACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016272XLOC_016272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028689-exon-sc0000697-1491911889:10623..11117TCONS_00028689-exon-sc0000697-1491911889:10623..11117Clytia hemisphaericaexon
TCONS_00028689-exon-sc0000697-1510915933:10623..11117TCONS_00028689-exon-sc0000697-1510915933:10623..11117Clytia hemisphaericaexon
TCONS_00028689-exon-sc0000697-1575043694:10623..11117TCONS_00028689-exon-sc0000697-1575043694:10623..11117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000697supercontigsc0000697:10623..11117 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.120966	0.421361	0	0.167286	0.396574	0.159483	0.447919	0.209066	0.258962	0	0.330461	0.412502	0.34271	0.352193	0.0755914	0.0931224	0.286342	0	0.137988	0	0	0	0.129309	0.133185	0.118864	0.170094	0	0.413051	0.140278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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