TCONS_00028687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028687
Unique NameTCONS_00028687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028687 ID=TCONS_00028687|Name=TCONS_00028687|organism=Clytia hemisphaerica|type=transcript|length=235bp
CCGGCTCTTATTGGAATACTTTAAGGGTCTGGCTACATCTTGAATATAAA
CAAATCaactaaaattcaaaatggcgcaTTTCATCTTTCCaaattcataa
ttttgaaaattgatttttcaaccTCAAGTATCGACTATTTTGGCACTATG
CAGCTATGAGTGACTGGAAATTCGAAGGAATCACTGAATCAATTCAAAAG
GTTGATTTTCCTTGGCTAATGTCGGtctttttttt
Run BLAST on NCBI

transcript from alignment at sc0000697:146..380

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028687 ID=TCONS_00028687|Name=TCONS_00028687|organism=Clytia hemisphaerica|type=transcript|length=235bp|location=Sequence derived from alignment at sc0000697:146..380 (Clytia hemisphaerica)
aaaaaaaagaCCGACATTAGCCAAGGAAAATCAACCTTTTGAATTGATTC
AGTGATTCCTTCGAATTTCCAGTCACTCATAGCTGCATAGTGCCAAAATA
GTCGATACTTGAggttgaaaaatcaattttcaaaattatgaatttGGAAA
GATGAAAtgcgccattttgaattttagttGATTTGTTTATATTCAAGATG
TAGCCAGACCCTTAAAGTATTCCAATAAGAGCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016270XLOC_016270Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028687-exon-sc0000697-1491911889:146..380TCONS_00028687-exon-sc0000697-1491911889:146..380Clytia hemisphaericaexon
TCONS_00028687-exon-sc0000697-1510915933:146..380TCONS_00028687-exon-sc0000697-1510915933:146..380Clytia hemisphaericaexon
TCONS_00028687-exon-sc0000697-1575043694:146..380TCONS_00028687-exon-sc0000697-1575043694:146..380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000697supercontigsc0000697:146..380 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.950605	2.20749	0	14.4606	16.6211	16.2927	9.38651	4.10732	2.03503	1.97525	0.649226	2.5933	4.71303	2.76768	4.15821	0	3.00027	2.07252	1.08437	3.77005	0	2.23542	5.08081	10.4662	7.47269	0	0	3.24593	1.10236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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