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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028682 ID=TCONS_00028682|Name=TCONS_00028682|organism=Clytia hemisphaerica|type=transcript|length=1334bp
GCTGTTAACATTTCTTAAAGATATCATCACTGCTATCAAATGTGCTGGAC
CGATCATAATGGCATGTTTAAGGAAAACTTgcacaaagaaaaaagaagaa
gatgcCAACGAGATCAATGAAATGGAAGCACTACAAGCAGGAGACAACAA
AAGAAAACGGGGTTTAATGTTGTATGGCGAGAGGTTTTAAACGGATATAC
CATCCCATTTTTATTGTTAATCACTATTGCAACTTTACACTTGATTGTAA
GATTCGTGAAACACTTTCGACCATCAAGTTTAAGATTAACATGGTTGATA
ACGAGATTTTGTGTTGGGTATTATATCATCATCGCTTTTTGCTACAAAAA
TATCTGCAGAACAGTCTTTCAGATTTTGAACTGCAAAACAATAAATGAAG
TAACATTCTTATACATTGACGGTACTGttgaatgtttttctttgtgGCAG
GTGGCAAATATGTTATTCTTGGTATTTTGGGTTGTTCCATTCCCATTTGC
AGTCGTTTTGGGCTACTAcctgtttaaaaacaaaaagatttctgTGACCA
CGTATctcatatttttattatttccaATGTTTTGTATTCTGAGAACTTGT
TTCTCAAGATGGAAAAGAACTGTCGAGACTGACAGGAGCGATTTCATTGG
CAACAGATTCGCAGAAATATTCGAAGAGCCCTACAGAGACAAATTCTTTT
GGTGGGAATCTTGGCGACTTATCGAACGTTTTATTGTTTCTGGCATAGCA
GTATTTCTGACGAACCCTATCTATCGCATNCTACAGAGACAAATTCTTTT
GGTGGGAATCTTGGCGACTTATCGAACGTTTTATTGTTTCTGGCATAGCA
GTATTTCTGACAAACCCTATCTATCGCATCTTATACCTGACCCCCGTCTT
TGCTTCCTTATCGTATTTCCACTTTCGAATGAATCCTTATAAACGTTCGA
TGTATATTCTAAAACGATTAGATACAGTTTCTTGGTTTTGTTTATCCATT
CATTTGTTCATCAACGGAATGCGAGCTGTTGTCTACATTTATGATGTACC
TAATATCGACTTTATACGTCATGCACTAGAAGCTGCTAACATATTGGAGA
ATTTATTTTCACCACTCTGGTATCTTATTATTTCATTCTTTCTTAGGAAG
TTGTGtgaaaaatgtttgaatttttaaatgttATATAATGGAAACTTTCT
CAGCAGTGCTAGCCTTTTTAGCTAGTATTTTTAAGACAAATACTGATAAG
AGCCTACTCTTAGGTGCCTAATAAAGGCCCCcctcttgtttattttttta
aatttcttttccaaccccggaccttattaggacc Run BLAST on NCBI transcript from alignment at sc0000697:124898..128009+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028682 ID=TCONS_00028682|Name=TCONS_00028682|organism=Clytia hemisphaerica|type=transcript|length=3112bp|location=Sequence derived from alignment at sc0000697:124898..128009+ (Clytia hemisphaerica)
GCTGTTAACATTTCTTAAAGATATCATCACTGCTATCAAATGTGCTGGAC
CGATCATAATGGCATGTTTAAGGTAAGAAAGAATTAAATATTTGCGTACA
GTTCAAAGGACACGATAATCACAAATTTGtaatattccaaaaattttgta
atATTTGCGGAGTGTTGTGATTTTCCAGTTGCACAGTTTTGCGATCAAGA
GATTGCACAGTTTTGTGATTTAAAAAGTATTTGACTTATTTATTACCTTG
AGATATTGGATGAGagcagaaaacaatcaaattaaattttttgcatTGCG
AATGTACATTGctgaaaaaataattactttattTATCAGCTCACTAACGT
AACGATAGAAAGAGACCTCGACCTCCTTTTTCGTTAATCTGAGTTTTAAG
TATTAAAGTAAGATAATATCACTCCCGataatattgagaattttgaaaaa
tcaagccagcTCTTTGCAGAGTATACTTGTTTTGTAACGAATGAGAATAA
ATTTGCACAGAATTAAGTAAGAATTAAGAGTTCCAAGTCGGCACGTTGAT
TTTTGGTTTAAATAATCTTTTGAATTGGATAATTCCTGTAAATTTCGGAT
TAACTCGCAATATTGCGAGCTACTTGATAGGACCATTTCTAGTTATTAAA
AAAGGCCAATGAATAACGTTGTTCATaaagaaacatcaaaatctagtact
gtttttgcttggaaaaactCGGAACATTTGGTCTTAATTCAGCTTGTTTG
TAGTTGTATGAACTTGTAAGATAAATCACACTATATAAAGTCAAATTAAA
ATACTTTTCTTATACCCTTATCTTAGGTCCcacatttccagaaaaattaa
atttaccGGTTGCGCCAcagaaaaacgttttttcacTTTAAAGTAGCTtt
gccctcctacatagcccacgCCTGATATATatgacattggcacttaaaag
GTTAAAGtagattttctcgagttctatggcTTTTAAAAACTTGAATTAGT
CATTTATTAAACTTGGTCCTTTTCCCGTATCTGTTCGAGTATTaggtata
tatatatattatatacacAAGCATatattaaaagattttgttcTTTTAAG
TTAATCCTTCCTCTTTTGAACGCATTACAGTTTACTCTTCAAATGTTCGA
AATAAATGAGgtcaaacttttttgtggcacacccggtattgAACAAAAAG
TGctttaattatttaaaaaaattgcaaaagtaaACAAGGACGCAGGGATT
CAATTACTAAAGTACGCATAAGAGAGTTACAGATTCTATTTTAATACATA
TATTGCCCCTATATTTCATAGCAATATATTGCAGTGTTAGTAAAGGCAGG
AGAATATTATACATTATGgaggtatacggaaaaaaatcggtggGGGAGTT
TCGAAATAAGATTGACAAACTTTACtagctgtaaactcttttcggcaaaa
agccctttttcgaattttcttcctcttttttAAATAGTGATTTGTCATAG
ATTATAATATAGTCTATATATTGCCTTGGCCATGACCTCTATAAAACAAA
AGTGCGCGCTgataaattacaaaactgcataGAAATTACAAAAATCGCAC
ATAGCAGTACCCCTACCCCAAAAGACAATTTCATTCGTGGGACAAAAGTT
CTCTGAATATATATTCTTGTGAATTCCATTTTAGGAAAACTTgcacaaag
aaaaaagaagaagatgcCAACGAGATCAATGAAATGGAAGCACTACAAGC
AGGAGACAACAAAAGAAAACGTAAAGAGATTTCAACTTCATCAatcttta
atattttggtcTCTTTCTTTCAGTTGAAAGCTTTGATAACAGTTCAGAGC
AATGAAAAAACGTTAATCGATAAACTTATGAACATGGATATTATGGTTAA
AAGCAGTGATGCTTTAGATGCACTTTGTCCTTTCAGGGGGTTTAATGTTG
TATGGCGAGAGGTTTTAAACGGATATACCATCCCATTTTTATTGTTAATC
ACTATTGCAACTTTACACTTGATTGTAAGATTCGTGAAACACTTTCGACC
ATCAAGTTTAAGATTAACATGGTTGATAACGAGATTTTGTGTTGGGTATT
ATATCATCATCGCTTTTTGCTACAAAAATATCTGCAGAACAGTCTTTCAG
ATTTTGAACTGCAAAACAATAAATGAAGTAACATTCTTATACATTGACGG
TACTGttgaatgtttttctttgtgGCAGGTGGCAAATATGTTATTCTTGG
TATTTTGGGTTGTTCCATTCCCATTTGCAGTCGTTTTGGGCTACTAcctg
tttaaaaacaaaaagatttctgTGACCACGTATctcatatttttattatt
tccaATGTTTTGTATTCTGAGAACTTGTTTCTCAAGATGGAAAAGAACTG
TCGAGACTGACAGGAGCGATTTCATTGGCAACAGATTCGCAGAAATATTC
GAAGAGCCCTACAGAGACAAATTCTTTTGGTGGGAATCTTGGCGACTTAT
CGAACGTTTTATTGTTTCTGGCATAGCAGTATTTCTGACGAACCCTATCT
ATCGCATNCTACAGAGACAAATTCTTTTGGTGGGAATCTTGGCGACTTAT
CGAACGTTTTATTGTTTCTGGCATAGCAGTATTTCTGACAAACCCTATCT
ATCGCATCTTATACCTGACCCCCGTCTTTGCTTCCTTATCGTATTTCCAC
TTTCGAATGAATCCTTATAAACGTTCGATGTATATTCTAAAACGATTAGA
TACAGTTTCTTGGTTTTGTTTATCCATTCATTTGTTCATCAACGGAATGC
GAGCTGTTGTCTACATTTATGATGTACCTAATATCGACTTTATACGTCAT
GCACTAGAAGCTGCTAACATATTGGAGAATTTATTTTCACCACTCTGGTA
TCTTATTATTTCATTCTTTCTTAGGAAGTTGTGtgaaaaatgtttgaatt
tttaaatgttATATAATGGAAACTTTCTCAGCAGTGCTAGCCTTTTTAGC
TAGTATTTTTAAGACAAATACTGATAAGAGCCTACTCTTAGGTGCCTAAT
AAAGGCCCCcctcttgtttatttttttaaatttcttttccaaccccggac
cttattaggacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028682-exon-sc0000697-1491911889:124898..124969 | TCONS_00028682-exon-sc0000697-1491911889:124898..124969 | Clytia hemisphaerica | exon |
| TCONS_00028682-exon-sc0000697-1510915933:124898..124969 | TCONS_00028682-exon-sc0000697-1510915933:124898..124969 | Clytia hemisphaerica | exon |
| TCONS_00028682-exon-sc0000697-1575043694:124898..124969 | TCONS_00028682-exon-sc0000697-1575043694:124898..124969 | Clytia hemisphaerica | exon |
| TCONS_00028682-exon-sc0000697-1491911889:126582..126667 | TCONS_00028682-exon-sc0000697-1491911889:126582..126667 | Clytia hemisphaerica | exon |
| TCONS_00028682-exon-sc0000697-1510915933:126582..126667 | TCONS_00028682-exon-sc0000697-1510915933:126582..126667 | Clytia hemisphaerica | exon |
| TCONS_00028682-exon-sc0000697-1575043694:126582..126667 | TCONS_00028682-exon-sc0000697-1575043694:126582..126667 | Clytia hemisphaerica | exon |
| TCONS_00028682-exon-sc0000697-1491911889:126834..128009 | TCONS_00028682-exon-sc0000697-1491911889:126834..128009 | Clytia hemisphaerica | exon |
| TCONS_00028682-exon-sc0000697-1510915933:126834..128009 | TCONS_00028682-exon-sc0000697-1510915933:126834..128009 | Clytia hemisphaerica | exon |
| TCONS_00028682-exon-sc0000697-1575043694:126834..128009 | TCONS_00028682-exon-sc0000697-1575043694:126834..128009 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000697 | supercontig | sc0000697:124898..128009 + |
Blast
The following BLAST results are available for this feature:
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