|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028668 ID=TCONS_00028668|Name=TCONS_00028668|organism=Clytia hemisphaerica|type=transcript|length=2205bp
gcttatttttctgaagaaaaagaaTGGATCAtaacaaatgaaaagaaaaa
tgaacctTCATGAGTATATAACCCAGAACAATGCCCAATGGCCAAAGCTC
AataattttccaattcttttaCCAAATCCAGGTCTCAGTGtgctttttaa
aaaacatgattgtgaaaaaacttaaattaaTCAGATTCTAAAATATTAGG
AAAATCTGTAATGTAGGCATTTCCACCATCAACTTCAAGAGATATGCATT
GTTCAAAGATGTCTTTAATTTCAATGATGCTCAATTTGTTATCAAGCTTG
ACTTTTTTAACCAAACATTTGTTTTCATCAAACTTCAAACATTTCAGAAA
GCTGCTTGATGGTTCAAATATTTGAACTGGTTCAACATTAAAGTAATGTC
CAAAAGCAATATAATATGAATCTCCATCATCAGTCTTAAAGCAAGCAAAA
CGTTGAATGGAAAAGTAGTGGCCTGTGGTCAGAGAAACGGATATACTATT
TCGACGGACTTCTTTTGTGCGACAACCAGACCTTATTATGAACCCACCAA
GCTTAATAGATGGAAAGGTTGACACTGATGAATGCATTACCATAAACCGA
CTTGTAAATAGTTGGTCTTCTTCTCTGGTGACATAATAAGGTGAAAGACT
GCCAATACCAGTTAAAGTTTGAGTAATTCGAAAAATATGTTTGTGGTAGG
TTCCATTTAGTTGCTTCAAGTACTTGTGCTCCTTGGTATTTGGTTTTATA
CAAATTTCTGCGAGGTATGGAAGATTATTTGAGGCAGAAACAGCACTTGC
TAATTGAAAAGGAATGTTTTGTGTACCATGGATGAGTTTTAAAATATAAC
CATTCTTATCCTCAAAACTGAACAAGCTATAAACATAGAGAGGACCAAGC
TCCAAAACAGTTTGCGGTAGATGTACCAAAGAGTGGATATTAATGGTCAT
ATAACGGCGGGTATAGAGCTTATCGAAAGATGCACAGAATAAGAAGAGAA
ATCTTCTGGCAGTATTAATATCGtctaaattaatttttgatttcagcAGA
AGGTGAACAGCATGACTGAGTAgataaaaatgctcaaaataaATTGACGG
TAGAAGATTTAACATAACAGGAACAAAATAATACAGCAAAAATGAGCGAA
ACTCTGATGCTTTCCAATAGCCAAGATTACCTTTGATGGTACGGGGAACA
CGGGATATATGATTTGGCGGCTTCAGGGATACTAAACGATCTTCTATGGT
AGGTAAGGATTGAAAAACAGAATAACTTTCTCCTTTATGGGAGCCATCAA
ACCAAAAAGACATAAGTAACTTTGTGACTCCAAGAAGAACTGCATGCATG
TAATCGATATACCCATACCACGAATGACATCATAATCTGGTACAAGCATT
AATGGTGATGGTCCTTTAACACCCTTAACATGTGCCTCGCTAGAATTGAT
TGCTTCAATAGCatattcctttgttttggagtgtGTACGAGGAGGGCCAG
ACGGGTTAGCCTTATCAAACGGAAAGCATCTCACATTACCATTTTTATTT
GTCTTTTCTGTTTTTCCTTCCTGTAAACATTTAGGACACCCATAAAATGA
ATTGAACTGCTGAAAATTTAAGACACTCGCTTTAGCAGGCATATCAAAGG
TTCCACAGAGCAACATTGACTTGATTGTTACatctttattaattttgatt
ccACAATAGGAAAATTCTCTCAATGTTTCAAATTGTGGTGGCAAGAATAA
GAGCATGTTAGGATGAGTTTCACCATACCACAGGCCACTGATTAATATGT
TCTCCTTTTTTCTTCGNAAGAGCATGTTAGGATGAGTTTCACCATACCAC
AGGCCACTGATTAATATATTCTCCTTTTTTCTTCGGTCTTCATAAGGTAA
TTCGTTAATGGTGTAGAAAACTGGCCAGATAGAAGATTTGATACTTTTAA
AAAGGGGTACACCATCTGTATTCCACATGAAGGAAATGttcaaaggattg
ttaagaaaCGAAGAGAATGATTTGTAGAGTGAAAAGTCGTAAATATCAGA
CGGGGAAGAAGAATTGCGATTGAAGCGATGTGACAGCTTTTCCAACATTC
CAGCACGTGAGAAAATGGACTTGATTTGGGCTTTGATATCAAATTCCATA
AAATAAGATTTAGCCAATGGTTTTGAAGACTTTTTTGATTGAGCACAAGT
AGAAT Run BLAST on NCBI protein sequence of TCONS_00028668-protein >TCONS_00028668-protein ID=TCONS_00028668-protein|Name=TCONS_00028668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MHAVLLGVTKLLMSFWFDGSHKGESYSVFQSLPTIEDRLVSLKPPNHISR
VPRTIKGNLGYWKASEFRSFLLYYFVPVMLNLLPSIYFEHFYLLSHAVHL
LLKSKINLDDINTARRFLFLFCASFDKLYTRRYMTINIHSLVHLPQTVLE
LGPLYVYSLFSFEDKNGYILKLIHGTQNIPFQLASAVSASNNLPYLAEIC
IKPNTKEHKYLKQLNGTYHKHIFRITQTLTGIGSLSPYYVTREEDQLFTS
RFMVMHSSVSTFPSIKLGGFIIRSGCRTKEVRRNSISVSLTTGHYFSIQR
FACFKTDDGDSYYIAFGHYFNVEPVQIFEPSSSFLKCLKFDENKCLVKKV
KLDNKLSIIEIKDIFEQCISLEVDGGNAYITDFPNILESD Run BLAST on NCBI transcript from alignment at sc0000695:70580..72784 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028668 ID=TCONS_00028668|Name=TCONS_00028668|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at sc0000695:70580..72784 (Clytia hemisphaerica)
ATTCTACTTGTGCTCAATCAAAAAAGTCTTCAAAACCATTGGCTAAATCT
TATTTTATGGAATTTGATATCAAAGCCCAAATCAAGTCCATTTTCTCACG
TGCTGGAATGTTGGAAAAGCTGTCACATCGCTTCAATCGCAATTCTTCTT
CCCCGTCTGATATTTACGACTTTTCACTCTACAAATCATTCTCTTCGttt
cttaacaatcctttgaaCATTTCCTTCATGTGGAATACAGATGGTGTACC
CCTTTTTAAAAGTATCAAATCTTCTATCTGGCCAGTTTTCTACACCATTA
ACGAATTACCTTATGAAGACCGAAGAAAAAAGGAGAATATATTAATCAGT
GGCCTGTGGTATGGTGAAACTCATCCTAACATGCTCTTNCGAAGAAAAAA
GGAGAACATATTAATCAGTGGCCTGTGGTATGGTGAAACTCATCCTAACA
TGCTCTTATTCTTGCCACCACAATTTGAAACATTGAGAGAATTTTCCTAT
TGTggaatcaaaattaataaagatGTAACAATCAAGTCAATGTTGCTCTG
TGGAACCTTTGATATGCCTGCTAAAGCGAGTGTCTTAAATTTTCAGCAGT
TCAATTCATTTTATGGGTGTCCTAAATGTTTACAGGAAGGAAAAACAGAA
AAGACAAATAAAAATGGTAATGTGAGATGCTTTCCGTTTGATAAGGCTAA
CCCGTCTGGCCCTCCTCGTACacactccaaaacaaaggaatatGCTATTG
AAGCAATCAATTCTAGCGAGGCACATGTTAAGGGTGTTAAAGGACCATCA
CCATTAATGCTTGTACCAGATTATGATGTCATTCGTGGTATGGGTATATC
GATTACATGCATGCAGTTCTTCTTGGAGTCACAAAGTTACTTATGTCTTT
TTGGTTTGATGGCTCCCATAAAGGAGAAAGTTATTCTGTTTTTCAATCCT
TACCTACCATAGAAGATCGTTTAGTATCCCTGAAGCCGCCAAATCATATA
TCCCGTGTTCCCCGTACCATCAAAGGTAATCTTGGCTATTGGAAAGCATC
AGAGTTTCGCTCATTTTTGCTGTATTATTTTGTTCCTGTTATGTTAAATC
TTCTACCGTCAATttattttgagcatttttatcTACTCAGTCATGCTGTT
CACCTTCTgctgaaatcaaaaattaatttagaCGATATTAATACTGCCAG
AAGATTTCTCTTCTTATTCTGTGCATCTTTCGATAAGCTCTATACCCGCC
GTTATATGACCATTAATATCCACTCTTTGGTACATCTACCGCAAACTGTT
TTGGAGCTTGGTCCTCTCTATGTTTATAGCTTGTTCAGTTTTGAGGATAA
GAATGGTTATATTTTAAAACTCATCCATGGTACACAAAACATTCCTTTTC
AATTAGCAAGTGCTGTTTCTGCCTCAAATAATCTTCCATACCTCGCAGAA
ATTTGTATAAAACCAAATACCAAGGAGCACAAGTACTTGAAGCAACTAAA
TGGAACCTACCACAAACATATTTTTCGAATTACTCAAACTTTAACTGGTA
TTGGCAGTCTTTCACCTTATTATGTCACCAGAGAAGAAGACCAACTATTT
ACAAGTCGGTTTATGGTAATGCATTCATCAGTGTCAACCTTTCCATCTAT
TAAGCTTGGTGGGTTCATAATAAGGTCTGGTTGTCGCACAAAAGAAGTCC
GTCGAAATAGTATATCCGTTTCTCTGACCACAGGCCACTACTTTTCCATT
CAACGTTTTGCTTGCTTTAAGACTGATGATGGAGATTCATATTATATTGC
TTTTGGACATTACTTTAATGTTGAACCAGTTCAAATATTTGAACCATCAA
GCAGCTTTCTGAAATGTTTGAAGTTTGATGAAAACAAATGTTTGGTTAAA
AAAGTCAAGCTTGATAACAAATTGAGCATCATTGAAATTAAAGACATCTT
TGAACAATGCATATCTCTTGAAGTTGATGGTGGAAATGCCTACATTACAG
ATTTTCCTAATATTTTAGAATCTGAttaatttaagttttttcacaatcat
gttttttaaaaagcaCACTGAGACCTGGATTTGGtaaaagaattggaaaa
ttatTGAGCTTTGGCCATTGGGCATTGTTCTGGGTTATATACTCATGAag
gttcatttttcttttcatttgttaTGATCCAttctttttcttcagaaaaa
taagc Coding sequence (CDS) from alignment at sc0000695:70580..72784 >TCONS_00028668 ID=TCONS_00028668|Name=TCONS_00028668|organism=Clytia hemisphaerica|type=CDS|length=1173bp|location=Sequence derived from alignment at sc0000695:70580..72784 (Clytia hemisphaerica)
ATGCATGCAGTTCTTCTTGGAGTCACAAAGTTACTTATGTCTTTTTGGTT
TGATGGCTCCCATAAAGGAGAAAGTTATTCTGTTTTTCAATCCTTACCTA
CCATAGAAGATCGTTTAGTATCCCTGAAGCCGCCAAATCATATATCCCGT
GTTCCCCGTACCATCAAAGGTAATCTTGGCTATTGGAAAGCATCAGAGTT
TCGCTCATTTTTGCTGTATTATTTTGTTCCTGTTATGTTAAATCTTCTAC
CGTCAATttattttgagcatttttatcTACTCAGTCATGCTGTTCACCTT
CTgctgaaatcaaaaattaatttagaCGATATTAATACTGCCAGAAGATT
TCTCTTCTTATTCTGTGCATCTTTCGATAAGCTCTATACCCGCCGTTATA
TGACCATTAATATCCACTCTTTGGTACATCTACCGCAAACTGTTTTGGAG
CTTGGTCCTCTCTATGTTTATAGCTTGTTCAGTTTTGAGGATAAGAATGG
TTATATTTTAAAACTCATCCATGGTACACAAAACATTCCTTTTCAATTAG
CAAGTGCTGTTTCTGCCTCAAATAATCTTCCATACCTCGCAGAAATTTGT
ATAAAACCAAATACCAAGGAGCACAAGTACTTGAAGCAACTAAATGGAAC
CTACCACAAACATATTTTTCGAATTACTCAAACTTTAACTGGTATTGGCA
GTCTTTCACCTTATTATGTCACCAGAGAAGAAGACCAACTATTTACAAGT
CGGTTTATGGTAATGCATTCATCAGTGTCAACCTTTCCATCTATTAAGCT
TGGTGGGTTCATAATAAGGTCTGGTTGTCGCACAAAAGAAGTCCGTCGAA
ATAGTATATCCGTTTCTCTGACCACAGGCCACTACTTTTCCATTCAACGT
TTTGCTTGCTTTAAGACTGATGATGGAGATTCATATTATATTGCTTTTGG
ACATTACTTTAATGTTGAACCAGTTCAAATATTTGAACCATCAAGCAGCT
TTCTGAAATGTTTGAAGTTTGATGAAAACAAATGTTTGGTTAAAAAAGTC
AAGCTTGATAACAAATTGAGCATCATTGAAATTAAAGACATCTTTGAACA
ATGCATATCTCTTGAAGTTGATGGTGGAAATGCCTACATTACAGATTTTC
CTAATATTTTAGAATCTGAttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028668-exon-sc0000695-1491911889:70580..72784 | TCONS_00028668-exon-sc0000695-1491911889:70580..72784 | Clytia hemisphaerica | exon |
| TCONS_00028668-exon-sc0000695-1510915933:70580..72784 | TCONS_00028668-exon-sc0000695-1510915933:70580..72784 | Clytia hemisphaerica | exon |
| TCONS_00028668-exon-sc0000695-1575043694:70580..72784 | TCONS_00028668-exon-sc0000695-1575043694:70580..72784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000695 | supercontig | sc0000695:70580..72784 . |
Blast
The following BLAST results are available for this feature:
|
