TCONS_00028666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028666
Unique NameTCONS_00028666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028666 ID=TCONS_00028666|Name=TCONS_00028666|organism=Clytia hemisphaerica|type=transcript|length=652bp
ggaaagTCAATCTttgcgggacttattttcgcaaCTAACTCCGACTCTAA
ATTTTCGtgaggatttaatttcgcgaattgctgaattttttcagattttc
actttttttttagtttgattACGAGATTTTGTgtgtacagtagagtctct
ataACCCAAATGGCTAAGAGGAATGAAAATTTATACCCTTAAGctCTTAA
TTGAACACACTGATGGCTCaagcaaaaaatttcaaacatggAAACCGAAC
AATTGTGttggaaaacaattttttattgaatatcTTATCGTTGAAGTTTT
GGTTGAAGGACAACGTTGCCTCGCTCTTACATTTATGCCATTTGATGAAG
ACAGCGATACTTCTGATCATAtttatttgcaatattttggaACAAAGAAA
GTtGAGAAGATTTCCAAATCCTTGCTGATTCCATATAAAAATTTTGTAAC
TAACAAGGACTCAAGATCAAAATCTAGTAATTATAGGTATTATCAACTAG
AAGATTGTGCACAATGGTTTCAGTCCTTAAAAATGGAATTGATACTTTTC
AAAAgTTTGTATGCTGTTTCACCCTGCTCAGTTAAAGTGTTCAACAACAA
GTCCGGCAATCAATTAGAAGGAACGATATCAAAGCATAACATTATTAATA
gg
Run BLAST on NCBI

transcript from alignment at sc0000695:147326..150987-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028666 ID=TCONS_00028666|Name=TCONS_00028666|organism=Clytia hemisphaerica|type=transcript|length=3662bp|location=Sequence derived from alignment at sc0000695:147326..150987- (Clytia hemisphaerica)
GGAAAGTCAATCTTTGCGGGACTTATTTTCGCAACTAACTCCGACTCTAA
ATTTTCGTGAGGATTTAATTTCGCGAATTGCTGAATTTTTTCAGATTTTC
ACTTTTTTTTTAGTTTGATTACGAGATTTTGTGTGTACAGTAGAGTCTCT
ATAACCCAAATGGCTAAGAGGAATGAAAATTTATACCCTTAAGGTACATA
ATTTCAGTGTCAGGATAATCTGATAGCGTATCAATGACCTATAAACCTAT
GCATGAGTTGTTTTCTTGTCACCAAAAACCACCAGTAAACCACTCCAGGT
GGTATTATAAATAAATTATGTAAGATCCATAGCAGGCAGCTAAAAGTGCT
TCCAAATTCAAAATTCGAAGCCATCTTATTAAGAGCTCTTAAAAGCTAGT
GTTTATATTGGAAAGAGTAAAAGTTTTTTGGCTTTCAAATTCAGAAATGA
CAGTTTTTCAGGGAATATCAAGGAATGTCATTTCTATTTTTCAGTAAAAT
TTGAGAGGTTGAAGTATCACACTTTCTTTATTATTTTAAAGATTTTTTCA
AAAAATGGCTCTTAAAAAAATCACAATGACAAGAACTTCAAAATAACATT
GAATTTAGGCAAAATTTAAGAATCTTAATATTTTAAATTTATTTTATAGC
TCTTAATTGAACACACTGATGGCTCAAGCAAAAAATTTCAAACATGGAAA
CCGAACAATTGTGTTGGAAAACAATTTTTTATTGAATATCTTATCGTTGA
AGTTTTGGTTGAAGGACAACGTTGCCTCGCTCTTGTAAGTTTTTTCCCAA
GATTTCTACCTTATTGATGACAAACCCATACCATTTTTTCCTTTCTGTTA
AAAACTTTAGCTAATTTTCTCTTTATTCACATTGAACTATCACCTAGTCC
CCTACAACAGTAGGTCCATCTGGTTACAGGCTAAAATCAGCATTGAGAAT
ATATTTATATTCATTTATTTAGACATTTATGCCATTTGATGAAGACAGCG
ATACTTCTGATCATATTTATTTGCAATATTTTGGAACAAAGAAAGTGTAA
GTTTTCATCAGATATCTTAAAGACAAAACAAATGGAATTCTGGGGCATAT
TGATGTCCATAGAGACCTATTGCTGTCATGTCTAACTTTGTTGGATCTAA
ATTTGGTAGTTAACTCTTAATTAATGACCTCTCCCCATTTTATGACTTTT
TGCCAAAAAGTGTTTTAAAAACCTTCTTTTTTATAGGGAATTCACTAAAA
TCACTCCAATATCATGTAATTATGACCACCCCCCCCCAATTAATTTCATA
ATTTTTTAAAGTCCATCTCCCCCGCTTATTCCGCTTATTCTACCACCCCC
CCTTCAATTAAGCACAGAAGAGTATGATTCTTTAATTTTTAAGCATGTTT
TTGTTTTATAGTGTGAAGATTTCCAAATCCTTACTGATTCCATATAAAAA
TTTTGGAACTAACAAGGTATACTTTTTAAACAAAAATATAATAATTATTT
CTATTACGTTTAAAGTTTATTATTATTTAGATCAAACAATAAAATGGTCA
CTTTATTGTTTTTTTTTTATTTGTTCTCAGAAAGGAGTTGGAGTGTACTA
AAATGCAACATAGTTCTAAGAGCTCAAATTTACTTGCAATCCCTAGCTTT
AATTTATATTTTATATGTCGCTTCAAAACATTTCTTTTAATTCTTTTACA
GGACTCAAGATCAAAATCTAGTAATTATAGGTATTATCAACTAGAAGATT
GTGCACAATGGTTTCAGTCCTTAAAAATGGAATTGATACTTTTCAAAAGT
AAGCTTTGACCTCTCTTTTGATCTTTCAATAAGCAGGAAGATGAAAAACA
AAACATAAAAAAGCGACAAAAATTTCATACAATATGAGAAATATTTTTCT
CGCTCAGATTTTTCAATATTTTCCTCATCTGAAGGCAATTCCATATTGCA
CTCTGTATTGTGAGGTAACGATGATTAAATCTTCAAGCCTATTGAAGCAT
TTTTCAATTATTTATAATAATCTACAATTAGAAGAACCTGTGCTAGAAAC
CATTCCGTTGCAGCTTCTGCATATGCGATATACTTCTAGCTGCCTCTAGT
CAGATATGATCGTTTATCCTTGTTTAATGATTTTCTTTTAGGTTTGTATG
CTGTTTCACCCTGCTCAGTTAAAGTGTTCAAGTAAGATTTCACTTGTACT
TACTTTTTGAAAAATAGCTGATAGATTCAATGAAACTAAAGCTATTTAAC
CTGATTTAACCAAATTTTATAGGATCCNGAGTATGATTCTTTAATTTTTA
AGCATTTTTTTGTTTTATAGTGAGAAGATTTCCAAATCCTTGCTGATTCC
ATATAAAAATTTTGTAACTAACAAGGTATACTTTTTAAACAAAAATAGAA
TAATCATTTCTATTACGTTTAAAGTTTATTATTATTTAGGCAAATACTTT
TTTATTTATTGGTTTACGGATCCGCCGACGTTATTTTTGCCAAAATAAAT
AAAAAATAAAATAGAGATTTCAAAAGCTTTTATTTACTTTTTCTCCTCCG
ACCTTCAAAAAAGAAGAAATAAATAAAAAACTTTTACTTAAACAGGAAAA
CAAAAGAAAAGAAGAGAAAGAGATAGGGGTTAAATGATCTAACACAGCTG
TGCCCTATTCTGCCAATGTAAAGATATTTTGATCCTTCCCTTAATGTCAG
GGAACTTCCCTGTGGAATTTCCCTATCCACATAAAATAAACTAAATAGAT
CAAACAATAAAATGGTCACTTTATTGTTTTTTTTATTTGTTCTCAGAAAG
GAGTTAGAGTGTACTAAAATGCAACATAATTTTAAGAGCTCAAATTTACT
TGCAATCCCTAGCTTTAATTTATATTTTAATTTATATGTCTCTTCAAAAC
ATTTCTTTTAATTCTTTTACAGGACTCAAGATCAAAATCTAGTAATTATA
GGTATTATCAACTAGAAGATTGTGCACAATGGTTTCAGTCCTTAAAAATG
GAATTGATACTTTTCAAAAGTAAGCTTTGACCTCTCTTTTGATCTTTCAA
TAAGCAGGAAGATGAAAAACAAAACATAAAAAAGCGACAAAAATTTCATA
CAATATGAGAAATATTTTTCTCGCTCAGATTTTTCAATATTTTCCTCATC
TGAAGGCAATTCCATATTGCACTCTGTATTGTGAGGTAACGATGATTAAA
TCTTCAAGCCTATTGAAGCATTTTTCAATTATTTATAATAATCTACAATT
AGAAGAACCTGTGCTAGAAACCATTCCGTTGCAGCTTCTGCATATGCGAT
ATACTTCTAGCTGCCTCTAGTCAGATATGATCGTTTATCCTTGTTTAATG
ATTTTCTTTTAGGTTTGTATGCTGTTTCACCCTGCTCAGTTAAAGTGTTC
AAGTAAGATTTCACTTGTACTTACTTTTTGAAAAATAGCTGATAGATTCA
ATGAAACTAAAGCTATTTAACCTGATTTAACCAAATTTTATAGGATCCTT
TTCAAAAAATATTGTTTTACACTATTTTGAATGTATGCATCGAAAATTTA
TCTTTTCATGTATCTTTTTATTAATCTTTGTTATTTAAAAATATTTTATA
CCAGCAACAAGTCCGGCAATCAATTAGAAGGAACGATATCAAAGCATAAC
ATTATTAATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016257XLOC_016257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028666-exon-sc0000695-1575043694:150795..150987TCONS_00028666-exon-sc0000695-1575043694:150795..150987Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1575043694:150204..150338TCONS_00028666-exon-sc0000695-1575043694:150204..150338Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1575043694:149942..150015TCONS_00028666-exon-sc0000695-1575043694:149942..150015Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1575043694:148613..148667TCONS_00028666-exon-sc0000695-1575043694:148613..148667Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1575043694:147969..148065TCONS_00028666-exon-sc0000695-1575043694:147969..148065Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1575043694:147586..147625TCONS_00028666-exon-sc0000695-1575043694:147586..147625Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1575043694:147326..147383TCONS_00028666-exon-sc0000695-1575043694:147326..147383Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1510915933:150795..150987TCONS_00028666-exon-sc0000695-1510915933:150795..150987Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1510915933:150204..150338TCONS_00028666-exon-sc0000695-1510915933:150204..150338Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1510915933:149942..150015TCONS_00028666-exon-sc0000695-1510915933:149942..150015Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1510915933:148613..148667TCONS_00028666-exon-sc0000695-1510915933:148613..148667Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1510915933:147969..148065TCONS_00028666-exon-sc0000695-1510915933:147969..148065Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1510915933:147586..147625TCONS_00028666-exon-sc0000695-1510915933:147586..147625Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1510915933:147326..147383TCONS_00028666-exon-sc0000695-1510915933:147326..147383Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1491911889:150795..150987TCONS_00028666-exon-sc0000695-1491911889:150795..150987Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1491911889:150204..150338TCONS_00028666-exon-sc0000695-1491911889:150204..150338Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1491911889:149942..150015TCONS_00028666-exon-sc0000695-1491911889:149942..150015Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1491911889:148613..148667TCONS_00028666-exon-sc0000695-1491911889:148613..148667Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1491911889:147969..148065TCONS_00028666-exon-sc0000695-1491911889:147969..148065Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1491911889:147586..147625TCONS_00028666-exon-sc0000695-1491911889:147586..147625Clytia hemisphaericaexon
TCONS_00028666-exon-sc0000695-1491911889:147326..147383TCONS_00028666-exon-sc0000695-1491911889:147326..147383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000695supercontigsc0000695:147326..150987 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.341265	0.126286	7.0349e-05	0	0	0	0	0	0	0	0	0	0.01282	0	0	0	0	0	0	0.244751	0.368956	0	1.08063	0.114673	0.185614	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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