TCONS_00028648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028648
Unique NameTCONS_00028648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028648 ID=TCONS_00028648|Name=TCONS_00028648|organism=Clytia hemisphaerica|type=transcript|length=449bp
GGAAAGGTTATCGAAGAGCCATTTCAGATAAGCGCTCTGGAGGAGAtacc
aaaaaaaacataaaggaAGTTTCAACACTTATAGTTCATAGAATGAAGCC
AGTCCCAGTAGGAAAACTTAAGAGTCAAGAGTAAGAGGAAAAGGACATCA
GTCTTGACTTCAAAGCAACCTTGCCCACAAAATAGTATGCCAACATCTAT
CTCCATCGGTGACCTCTTAAATGCAGGAAAGCTGGTGATTCCAACAGAGG
AGAAGGAAGTACCATTGATACTTGAATCTTTCAATATAAAACATGGAATA
TGGCTGAAACAAACACCTTTAACCTTTCGTATGCAATTACAAAAGTTTGC
TGAGGGAGGATTTCGTAATGCATTTAAAGCGTACACAACAGAGAATGATG
CGACAAAAATGTGGGTCATTAAGAAATTTAAGGCAACAGCTTAGGAAGT
Run BLAST on NCBI

transcript from alignment at sc0000695:45692..46448-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028648 ID=TCONS_00028648|Name=TCONS_00028648|organism=Clytia hemisphaerica|type=transcript|length=757bp|location=Sequence derived from alignment at sc0000695:45692..46448- (Clytia hemisphaerica)
GGAAAGGTTATCGAAGAGCCATTTCAGATAAGCGCTCTGGAGGAGATACC
AAAAAAAACATAAAGGAAGTTTCAACACTTATAGTTCATAGAATGAAGCC
AGTCCCAGTAGGAAAACTTAAGAGGTATGAACCTGCACAACCAAGGGATT
TCATTGACTTTTCATCATATTCGAAGTTAACACTGAAAAATGTAAAGGAT
GCTTGTGAGAAGTTCTATGGAGAAGCAGCTGGCTCTTGTGATGTTCTTTA
TGATGTGTTAGGACCTTCTTGTTCATTAGATGAACAACTTTCTGGGATGA
AATTTTTCCGTGTGCGGTTTGTCAAGCCGTCAGAGATTTCCAATAAACCT
ATGTCATCTTCAAATGAAACCAACCGCATGTCCTCAAAGAGAGAAAATGA
CAGTGTAAAAAGTGTTCTTTTTTCTAAACCAGTCAAGAGTAAGAGGAAAA
GGACATCAGTCTTGACTTCAAAGCAACCTTGCCCACAAAATAGTATGCCA
ACATCTATCTCCATCGGTGACCTCTTAAATGCAGGAAAGCTGGTGATTCC
AACAGAGGAGAAGGAAGTACCATTGATACTTGAATCTTTCAATATAAAAC
ATGGAATATGGCTGAAACAAACACCTTTAACCTTTCGTATGCAATTACAA
AAGTTTGCTGAGGGAGGATTTCGTAATGCATTTAAAGCGTACACAACAGA
GAATGATGCGACAAAAATGTGGGTCATTAAGAAATTTAAGGCAACAGCTT
AGGAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016256XLOC_016256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028648-exon-sc0000695-1575043694:46325..46448TCONS_00028648-exon-sc0000695-1575043694:46325..46448Clytia hemisphaericaexon
TCONS_00028648-exon-sc0000695-1575043694:45692..46016TCONS_00028648-exon-sc0000695-1575043694:45692..46016Clytia hemisphaericaexon
TCONS_00028648-exon-sc0000695-1510915933:46325..46448TCONS_00028648-exon-sc0000695-1510915933:46325..46448Clytia hemisphaericaexon
TCONS_00028648-exon-sc0000695-1510915933:45692..46016TCONS_00028648-exon-sc0000695-1510915933:45692..46016Clytia hemisphaericaexon
TCONS_00028648-exon-sc0000695-1491911889:46325..46448TCONS_00028648-exon-sc0000695-1491911889:46325..46448Clytia hemisphaericaexon
TCONS_00028648-exon-sc0000695-1491911889:45692..46016TCONS_00028648-exon-sc0000695-1491911889:45692..46016Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000695supercontigsc0000695:45692..46448 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.109991	0.017761	0.315182	0.0383207	5.06363	0.746244	2.54279	2.61869	0.214203	0.616258	2.05856	0.174561	0.867001	0.696573	0.116341	0	0	0.130145	0	0	0	0.722945	0	4.51211e-07	2.36645	1.46343	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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