TCONS_00028639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028639
Unique NameTCONS_00028639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028639 ID=TCONS_00028639|Name=TCONS_00028639|organism=Clytia hemisphaerica|type=transcript|length=397bp
GGAAGGGCAAGTAAGGATGCATTTCATGAGATGTTGTAAACGAAAACCTG
AATTTGAGGACCTTAAAATTTTAGGCTCTACAATCAAAGGAGAAGTACAC
TTATTGACAATTGAGGCACTATTTATTAGGGAAATAAATTCAGACCTCCA
CACCAAGGATGAGTTTAAAAGCAGACAGCTGCTCATTAAGATTTGAATAC
TATTTATTCCATTGTCGTTATTAATGACAGCCTTGGGTATATGTATCTAT
TTTTGAtgattacattgtttttatatGTACATGCACAATTTTATGACTTA
ATTGTTTCCTTTTCTCTTTTAATACTTGTTTTATACTCCCatgtgatttt
atgatttttttcaattttttagaaataactgAACATTTTGCTTGTAG
Run BLAST on NCBI

transcript from alignment at sc0000694:4650..5046

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028639 ID=TCONS_00028639|Name=TCONS_00028639|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at sc0000694:4650..5046 (Clytia hemisphaerica)
CTACAAGCAAAATGTTcagttatttctaaaaaattgaaaaaaatcataaa
atcacatGGGAGTATAAAACAAGTATTAAAAGAGAAAAGGAAACAATTAA
GTCATAAAATTGTGCATGTACatataaaaacaatgtaatcaTCAAAAATA
GATACATATACCCAAGGCTGTCATTAATAACGACAATGGAATAAATAGTA
TTCAAATCTTAATGAGCAGCTGTCTGCTTTTAAACTCATCCTTGGTGTGG
AGGTCTGAATTTATTTCCCTAATAAATAGTGCCTCAATTGTCAATAAGTG
TACTTCTCCTTTGATTGTAGAGCCTAAAATTTTAAGGTCCTCAAATTCAG
GTTTTCGTTTACAACATCTCATGAAATGCATCCTTACTTGCCCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016249XLOC_016249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028639-exon-sc0000694-1491911889:4650..5046TCONS_00028639-exon-sc0000694-1491911889:4650..5046Clytia hemisphaericaexon
TCONS_00028639-exon-sc0000694-1510915933:4650..5046TCONS_00028639-exon-sc0000694-1510915933:4650..5046Clytia hemisphaericaexon
TCONS_00028639-exon-sc0000694-1575043694:4650..5046TCONS_00028639-exon-sc0000694-1575043694:4650..5046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000694supercontigsc0000694:4650..5046 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.377423	0.368047	0.641006	1.04521	2.29039	0.2011	2.18356	1.81709	0.954141	0.787905	2.48547	0.502723	0.753036	0.391018	0.642939	0.459982	0.28333	0.290404	1.80544	2.93885	1.45966	0.533976	1.73098	2.16386	1.41828	2.35073	1.2938	4.97082	0.41891	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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