TCONS_00028637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028637
Unique NameTCONS_00028637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028637 ID=TCONS_00028637|Name=TCONS_00028637|organism=Clytia hemisphaerica|type=transcript|length=2168bp
GAAAAGAAGATGATAACTGGgaTGAAATCGTCGTTTACCTTTGAAAAATC
GCACTTGGTCATGTATTGGAACTTTGTTTATCTGGATTGGGGATGCCTCA
CATTTTTTAATGTCATCCAATCGAATCTCGCTGTACAGTAATTGGTTCTT
ATCTGCCGTGCATCGCGCCAACATGTACGTCTCTGGTCGCTCCACTGTTT
CTTGGACATCTACCTTTAATCCTATGATTATGAAATAATAATTTCACAAA
CGAGACCTTACGACAATTTTATAACGCATGTTTATCGTACAGTGttaatg
ttttgtttgtttgattgCATCCACAAAAAGTCTAGTATCACATGTTATTA
CCTGTCCTTTGGAAATATTCCTCATCCGTCAAGAAAATGGCTGGGTCGTA
CAGCGTGTTGAATGTTACGAGGAAGTGAGACGCGCTCGAGACGGATGACG
AGTCGTGCCAACATACAAGTGTTCTGACCCTCTGGTACTTCTTTAAACGC
ACTGCCTCGTTCGGTGATTTTGGGTCGTAATTTTCGAGGAGCCGATCAAA
TTCATCACTTAACTCCTGCTCGCCAATCGTTTCGTAATATTCATCGGATT
TAATCCTGAGGAAATCTTCCTGTTTATTGAACATTGTCTGGCGGACTTCT
TGTAGTGTAAACATTCTTCCtgtaaaatttgtgttttttttaattaaccT
TTATTATATAAATATAACTATAAGACAATTTCATTAGAACTAGAAGCGGG
AACAATTCAGTTCATCAATTTTACCTGACCTTACATATTCGACTAATATT
TGGCTTTTAGGTCAGCATGAATATACCCctgacaaggcaaattttgtagg
tTTTTCACTACCCGCCCGGACNTTAATCCTGAGGAAATCTTCCTGTTTAT
TGAACATTGTCTGGCGGACTTCTTGTAGTGTAAACATTCTTCCtgtaaaa
tttgtgtttttttaattaACCTTTATTATATAGATATAACTATAAGACAA
TTTCATTAGAACTAGAAGCGGGAACAATTCAGTTAATCAATTTTACCTAA
CCTTACATATTCGACTAATATTTGGCTTTTAGGTCAGCATGGATATACCC
ctgacaaggcaaattttgtaggtTTTTCACTACCCGCCCGGACACTATAT
ACTCCATCCCCCATGTGCGGACCTTTTCTGGAAGATNTTTTCACTACCCG
CCCGGACACTATATACTCCATCCCCCCATGTGCGGACCTTTTCTGGAAGA
GTCCATTCTCATACTGAGAGTTTAGATTAGGTTTTACCCTCAGTGGTATA
CTGTGTGATCGTTGGTTCTCCTTTGTCATCCATTACCAGTTTTTCATAAG
TCTGTGGAACAATAGGCTTTCCCAATGAATACTTTCCctgataaaaaaaa
tagaattcgTAAATTAAGTATTTTTGTTTaaagatgtttttaatcaataa
gtTTCGTAGATATAATTGATTTTGCACTTGCTTAATCACGAAATTCAATC
TCTCATGAAACTTAATAACTCTCTAATTGTcaataaataatttttgctAA
ACAATTAAGATTAAAGCTTGTCCCTTGGTCACTTTCTCTGAATTgttcta
aaaaaatatataacgaCTTTAATCGGAGGCCTAAACAAAACtttgaaata
cttctttgacttCTTCTGCTAActgcttttttaattcaaacgTTGATATT
TCCATCGGCACAGATATGTTTGTTTTGAgaatcctgaaaaaaaatagaac
aaGTTTTCTCCACcaactttaaaaatatttagattCCATAGTTACCTTAG
TTTAAGGTTTCTCAGTTGAAACTCGAGAATgatattgatttaaaaaaggc
caaaaatacgcaccttctttttttcttccgaATCCGCAATCTTTTCCGTT
CAGTTTGGCCACCGAACCGATCAAGATCAACTTTGGAAACTTGAAGGAAA
TTGGAAATGATTTGTCCCCCGTTTTCGGGAACATTGCCgtttttgtgttt
tattttgaaattaattgcgATCTGCCTCATTATTGGTGGCTTGTCATTGG
GAAGGCTTTCTACGAACTTTATAACGCCGTCTCTATCGAATACGTAGTTG
TCCAAATTACCAACATGATTTGATGGCTTCGCTAAGCCCTGtgcttcttt
ttctttcctCTGTATTGT
Run BLAST on NCBI

transcript from alignment at sc0000694:19513..22598-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028637 ID=TCONS_00028637|Name=TCONS_00028637|organism=Clytia hemisphaerica|type=transcript|length=3086bp|location=Sequence derived from alignment at sc0000694:19513..22598- (Clytia hemisphaerica)
GAAAAGAAGATGATAACTGGGTAGAAAGTTTTTTGTCAACATGAAGATTG
TCATCTCTAAAAGTGATAATCTGTAATCACAGCCTCTTTTTGCCTCTTTT
GAAGAGAATGTAGCTTTCATTACCCGTTGAAACCTAAGTTTTGCCTCATC
CTTAAGGTGGTATTGTATTTCATTATAAATGTTTTTAATATGGCCAGCCA
TCGTATGTAGACCTTCAAGAGGTAGCACTTCATATCTTGGAACAGCAGTT
TTACATTCTTTAAGATTTCCGTGAAGCAAAGCTGGGAAACATTGTTTGCC
TTTGACCGTTTCGGCGAAAATCTTGTCAATTTGTTTTTTGGTTTTGTTCG
TGAGTTGGTCTTTGTTCTGAAATATTAAAATGGTTTGTATTTTCCACACA
TCTTTTTCTTTTTAGGAACAATTCAAATAATACTTTCTATATGCTATTTA
GAAGTATTTTCTTATTGGTCTTTGTAACTTTCCAAATTTACAAGGGTCTT
AAATTTCCGAGGACTCTTCTAGGAATGGCCTTATCGTATTTTTCTGCTCC
AAATGTATCATTCCCTCTAGCTTTTGACCTACCTTTCTTTGATGGAGCTC
TGAAATCATGCCTTCTCTATCAAGATCAGCGTAAAAGTTTGTTCTGCCAT
TCTCAGCACCTATTCGACCTGCTGTTGTTTGTAACATATCAGTGATTCTC
GAATTGAGAGAGACATGTTTTGTATTGAGTGAATGTGCAAGGTCGTATGT
TCTTTCCCCATCCACTTCGCACGCCCAACAAAAATACCTTCCTCCTTTCT
GGTGTCCGGACTCAAGCTGACAAGCAGGGCCGTCTCCTATAAGATAATAA
TTAATTTAAATCTTGAGAGCCTTTCTGTTTGCTGTAACTTGTATTATCAT
AAAAACAGCTTTCTATAATTTTTTTATTTCTTTTTTAGGATGAAATCGTC
GTTTACCTTTGAAAAATCGCACTTGGTCATGTATTGGAACTTTGTTTATC
TGGATTGGGGATGCCTCACATTTTTTAATGTCATCCAATCGAATCTCGCT
GTACAGTAATTGGTTCTTATCTGCCGTGCATCGCGCCAACATGTACGTCT
CTGGTCGCTCCACTGTTTCTTGGACATCTACCTTTAATCCTATGATTATG
AAATAATAATTTCACAAACGAGACCTTACGACAATTTTATAACGCATGTT
TATCGTACAGTGTTAATGTTTTGTTTGTTTGATTGCATCCACAAAAAGTC
TAGTATCACATGTTATTACCTGTCCTTTGGAAATATTCCTCATCCGTCAA
GAAAATGGCTGGGTCGTACAGCGTGTTGAATGTTACGAGGAAGTGAGACG
CGCTCGAGACGGATGACGAGTCGTGCCAACATACAAGTGTTCTGACCCTC
TGGTACTTCTTTAAACGCACTGCCTCGTTCGGTGATTTTGGGTCGTAATT
TTCGAGGAGCCGATCAAATTCATCACTTAACTCCTGCTCGCCAATCGTTT
CGTAATATTCATCGGATTTAATCCTGAGGAAATCTTCCTGTTTATTGAAC
ATTGTCTGGCGGACTTCTTGTAGTGTAAACATTCTTCCTGTAAAATTTGT
GTTTTTTTTAATTAACCTTTATTATATAAATATAACTATAAGACAATTTC
ATTAGAACTAGAAGCGGGAACAATTCAGTTCATCAATTTTACCTGACCTT
ACATATTCGACTAATATTTGGCTTTTAGGTCAGCATGAATATACCCCTGA
CAAGGCAAATTTTGTAGGTTTTTCACTACCCGCCCGGACNTTAATCCTGA
GGAAATCTTCCTGTTTATTGAACATTGTCTGGCGGACTTCTTGTAGTGTA
AACATTCTTCCTGTAAAATTTGTGTTTTTTTAATTAACCTTTATTATATA
GATATAACTATAAGACAATTTCATTAGAACTAGAAGCGGGAACAATTCAG
TTAATCAATTTTACCTAACCTTACATATTCGACTAATATTTGGCTTTTAG
GTCAGCATGGATATACCCCTGACAAGGCAAATTTTGTAGGTTTTTCACTA
CCCGCCCGGACACTATATACTCCATCCCCCATGTGCGGACCTTTTCTGGA
AGATNTTTTCACTACCCGCCCGGACACTATATACTCCATCCCCCCATGTG
CGGACCTTTTCTGGAAGAGTCCATTCTCATACTGAGAGTTTAGATTAGGT
TTTACCCTCAGTGGTATACTGTGTGATCGTTGGTTCTCCTTTGTCATCCA
TTACCAGTTTTTCATAAGTCTGTGGAACAATAGGCTTTCCCAATGAATAC
TTTCCCTGATAAAAAAAATAGAATTCGTAAATTAAGTATTTTTGTTTAAA
GATGTTTTTAATCAATAAGTTTCGTAGATATAATTGATTTTGCACTTGCT
TAATCACGAAATTCAATCTCTCATGAAACTTAATAACTCTCTAATTGTCA
ATAAATAATTTTTGCTAAACAATTAAGATTAAAGCTTGTCCCTTGGTCAC
TTTCTCTGAATTGTTCTAAAAAAATATATAACGACTTTAATCGGAGGCCT
AAACAAAACTTTGAAATACTTCTTTGACTTCTTCTGCTAACTGCTTTTTT
AATTCAAACGTTGATATTTCCATCGGCACAGATATGTTTGTTTTGAGAAT
CCTGAAAAAAAATAGAACAAGTTTTCTCCACCAACTTTAAAAATATTTAG
ATTCCATAGTTACCTTAGTTTAAGGTTTCTCAGTTGAAACTCGAGAATGA
TATTGATTTAAAAAAGGCCAAAAATACGCACCTTCTTTTTTTCTTCCGAA
TCCGCAATCTTTTCCGTTCAGTTTGGCCACCGAACCGATCAAGATCAACT
TTGGAAACTTGAAGGAAATTGGAAATGATTTGTCCCCCGTTTTCGGGAAC
ATTGCCGTTTTTGTGTTTTATTTTGAAATTAATTGCGATCTGCCTCATTA
TTGGTGGCTTGTCATTGGGAAGGCTTTCTACGAACTTTATAACGCCGTCT
CTATCGAATACGTAGTTGTCCAAATTACCAACATGATTTGATGGCTTCGC
TAAGCCCTGTGCTTCTTTTTCTTTCCTCTGTATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016248XLOC_016248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028637-exon-sc0000694-1575043694:22579..22598TCONS_00028637-exon-sc0000694-1575043694:22579..22598Clytia hemisphaericaexon
TCONS_00028637-exon-sc0000694-1575043694:19513..21660TCONS_00028637-exon-sc0000694-1575043694:19513..21660Clytia hemisphaericaexon
TCONS_00028637-exon-sc0000694-1510915933:22579..22598TCONS_00028637-exon-sc0000694-1510915933:22579..22598Clytia hemisphaericaexon
TCONS_00028637-exon-sc0000694-1510915933:19513..21660TCONS_00028637-exon-sc0000694-1510915933:19513..21660Clytia hemisphaericaexon
TCONS_00028637-exon-sc0000694-1491911889:22579..22598TCONS_00028637-exon-sc0000694-1491911889:22579..22598Clytia hemisphaericaexon
TCONS_00028637-exon-sc0000694-1491911889:19513..21660TCONS_00028637-exon-sc0000694-1491911889:19513..21660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000694supercontigsc0000694:19513..22598 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.205903	0	0	0	0	0	0	0	0.210612	0	0	0	0	0	0	0.219919	0	0	0.0920558	0	0	0.300955	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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