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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028579 ID=TCONS_00028579|Name=TCONS_00028579|organism=Clytia hemisphaerica|type=transcript|length=547bp
ATTATCATGAAAATGAAGCAAATACCTCAAGATTACTCAAATGGAAGCTT
AATAGCTCACTGGACAATAGTTTACAAAATGAGGTCACTTTTCTCAAAGA
TGAGTTAGCCAATTTGGAAATGAAGAAAAGTCAGGAAATCTTAACACTAA
GCGAGAGAACTGAGCGACAAATCAGCACTCTTCATGTCCTCCGCCACAAA
AGAGAAAAACTTGATACAAGAAGAGAACGAACAGCTGAAAGAATCACTTT
CCAAGAAAGAACATCTTTGTTTACAACTGCAAGaaatattgaatgaaaaa
tcaCAACAAATCGTCCGCATGCAACACAAGGAGACTGAAAACAGATCCAA
TTTAAATACAGAGGTCAAAAATTTGCGATCGAAGAAAAGTCAATTGGAAA
ATCGTGTATCAGACCTGGAAAAGGCTTTTTACAAACAATTATCAAAGATC
AAAGAGTTTGAATCACAATTCAAAGAAATGAAAGAACAACGTGATATTTC
AATGATAgccaaagaagaagaaatagCTGAGTTGAAACAACAAAACG Run BLAST on NCBI transcript from alignment at sc0000692:9195..15017+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028579 ID=TCONS_00028579|Name=TCONS_00028579|organism=Clytia hemisphaerica|type=transcript|length=5823bp|location=Sequence derived from alignment at sc0000692:9195..15017+ (Clytia hemisphaerica)
ATTATCATGAAAATGAAGCAAATACCTCAAGATTACTCAAATGGAAGCTT
AATGTATgttaaaaatgcaattttctaTTTATCTGTCAACGTTGCGGTGT
ATTATtttacgctttttttataagaaccagtaaagttTTTCTGAGGctca
gctgttcttatttttttggcactttgagcctgaaattgttcttatcctgt
tcttttgATGTAATTGGATGTAATTGGGGTATCTTAGGCGTtataccaaa
ttttttttcttaaacccCNATGTAATTGGGGTATCTTAGGCGTtatacca
aattttttttcttaaacccctaaattgcttgaaattgagtaaattTAGGC
TCAGCaatgttcttaaattattcttatttcttgccgattttgagcctcat
tgttcttataaaaaaatagtgTTTTATGGTGTTTCACAGGTATGCAAAGA
GATTCAATTCAAATTCGTGTTTATTTGTCTTCTGAAAAGGGTGAATTTGA
CCGAAATATTACAAGCAGTTTTTGTCCAACCAAAGTATTTCAGTGTAAAC
ACATTCTTTGCTATGATTTTTTACTTTCAGAGCTCACTGGACAATAGTTT
ACAAAATGAGGTCACTTTTCTCAAAGATGAGTTAGCCAATTTGGAAATGA
AGAAAAGTCAGGAAATCTTAACACTAAGCGAGGTAAACAATTATTGGATA
CATGTAAAGTTTCAAGTGGTCAAAACTTAATTGAAATGTCTCTGAAAAAT
AGACCATTGAGACCAAAAATAATTGTTACTCTCTGGGCTAGCTAGGGGGT
TTGGGGGGTGTTGttgggttggaaaaaaatgtactgggtggaaaattttg
aaaaggaggctaatacagcagaattagggcaaaagagggaactttttgtt
gattgttggaataaaaatgtcttgagtggtaaattttcgaaaattaatga
gcggggggacgcttattaggcacctgagagtaacCAGGAACAAAGGAGAG
CCATCATATAGGTGGATGTCTTTAGCAATGATCAAAAACTGAATGAGAAC
CTTTGATTCGAAAACCTTTGATTCGAAAACCTTTcgattttgccaaaaaa
agtttttttacacaTATCATACTCAAAttaaagtacacgttttttttata
agaacatccaacatttttgaagccttcgaatgttcttaaccaTTTGAGTT
TATAGCCTTTTGAGCCTATAAATGTTtttaacgtgttcttattttgacca
ttttccgagcatttttgcccattttgcGGTGTTTTAGaatctgcaaagcc
ttaaaatgttcttaacttgttcttaacattttggccatcgaagttttatt
ttcttatattgttcttataaaaaacgtatttGCTTAGCTTTTACTTCATT
GCTAATGTACTAGAGAACTGAGCGACAAATCAGCACTCTTCAGAAGAAAT
TGTCCACCACCACAAAAGAGAAAGACTTGATACAAGAAGAGAACGAACAG
CTGAAAGAATCACTTTCAAAGAAAGAACATCTTTGTTTACAACTGCAAGa
aatattgaatgaaaaatcaCAACAAATCGTCCGTATGCAACACCAGGAGA
CTGAAAACAGATCCAATTTAAATACAGAGGTAGTTGTTaattcactttta
tttttcaccctcagaatcaaaaaaattttcaaaacgcTGATTCACAAATC
TTTTggctcgcgaaattaaatctcaCAAAGATTAATACGATCTAAATAAC
CTCTAGTATCTAAtcgtatttttgtctcgatccttCGTCCAATATATACG
ATCTAAATATATTGCATCAAATTTCTACTAGAAGCCGTTTTTCACGTCTG
TTTTAATAAAGGTGTGCCCTAACATGAAGTTAGATCATCCAGCTACTGTA
CTCAAGGTTGTGGAGTAGGTCACACTAAAGATTGCCAAAATTGCATGCAT
TCGGTACATCTTTAACTTGATGCTCGGCAGCTAGAGGGGAAtgagagtgg
cgccctcccctaccttcggataGTCCTAAAGAAAAGAGAGCATTGGGTCT
CCCTCAACTTGGGTTGGAAACTTACGTATGTTATAATGGTGCGTTTCTAT
AGATCACCTCCAATGCAACAAACCAGGTTGTTTAGTTTTCCTTGATTTAA
TTATGTAATGCATCAATTATATAGGTAAAAAATTTGCGATCGAAGAAAAG
TCAATTGGAAAATCGTGTATCAGACCTAGAAAAGGTAGATTTCATTTCTC
TTTTAGAATTGAAGTTatcttctatttcttcaaaattatCTGCAtagttc
aaattttcttttcaacccTTATAATTATAATANAcatggacccccccccc
tggcatAGATTGTCACGAAAATCTCTCAAAAATGTATATCCCTTAGAGTC
GCAAATTATTAAGTTTATGAGTGTGGAAGAGCAGAATATTTTAATCTTAa
ctttgatttcgttttttaAAAGTCTGAAAGTACTTAATGCACTTTAAATG
TTCCAAGAACACAGTTTGGACAGCGACTcataaacattcaaaaatcttAG
AATGGAGATATAATTTGTGCCTGAAACTCAAACCTAGATTAACGCAccga
atcaaaagaaaaattcttttttgtacTAAAATTCTTGCTCCGTGGTACAT
TTTGTACTAGCTCGTCAATACAACGACTTTGAAGAATTGAGCCCTCACAA
AATCGAAGTTGCTGCACGCTTGCTTGGCCTATGGATTTGGAACACCTTGG
TTAACTCCCATCTTTCATGTTCTCTCCTTAGGTTTCAACacaaacagtaa
caccaaatacGTCACAAAGTCTTATGACCTTCAAACCAAATCACCAAATC
TGGAAGAAAAACCCCTCAAGTCTCAAGAAGATTATTACGAAGAAAGTTAC
CATCATGAAACTGAAGCAAATACCTCAAGATTACTCAAATGGAAGCTTAA
TGTATGTTCaaaatgctattttctattTATCTGTCAACGTTGCGGTGTAT
TAcacttttttacacttttttttttaagaaccagtAAAGTTTTTCTGAac
ctcggctgttcttatttttttggcactttgagcctgaaattgttcttatc
ctgttcttactTATTGGATGTAATTGGGGTATAttaggcgttatacccaa
tttttacttctttgacccctaaattgcttgaaattgagtaaattttggct
cagcaatgttcttaaattattctaatttttgccgattttgagccttattg
ttcttataaaaaatagttttaTGGTGTTTCACAGGTATACAAAGGGATTC
AATTCAAACTCGTGTTTATTTGTCTTCTGAAAAGGGtgaatttgaccaaa
atattacaACTGGAGTCTTTTTCAAGGAGTTTTTGTCCAACCAAAGTATT
TCAGTGTAAATACACTCTTTGCTATGATTATTTACTTTCAGAGCTCACTG
GACAATAGTTTACAAAATGAGGTCACCTTTCTCAAAGATGAGTTAGCCAA
TTTGGAAATGAAGAAAAGCCAGGAAATCTTAACACTAAGCGAGGTAAACA
ATTATTGGATACATATAAAGTTTCAAGTGGtcgaaattaaattgaaatgt
cTCTGAAAAATAGACCATTGAGACCAAAAATAATTGTTACTCTCGGGGCT
AGGtagggggtttggaataagcgggggggggggctgaagttgggttggaa
aaaaatgtactgggtggaaaattttgaaaaggacGCTAATatagcagaat
tagggcaaaagagggaactttttcccaaaaattattAAGGGGGGGGGTGA
TTgttcgaataaaaatgtcttgagtggaaaattttcgaaaattaatgggc
gggggacgcttattaggcacctgagagtaacCAGGAACAGAGAAGAGCCA
TCCTATAGGTTTATGTCTTTAGCAATGATCAAAAACTGAATGACAACCAT
TGATTCGAAAACCTTTTGCCAGAAAAAGTCTTTTACACATCATGATACTC
AAATTAAAGTATTTGCTTAGCTTTTACTCCATTGTAAAATGTGCTAACTA
TATGTACTAGAGAACTGAGCGACAAATCAGCACTCTTCATGTCCTCCGCC
ACAAAAGAGAAAAACTTGATACAAGAAGAGAACGAACAGCTGAAAGAATC
ACTTTCCAAGAAAGAACATCTTTGTTTACAACTGCAAGaaatattgaatg
aaaaatcaCAACAAATCGTCCGCATGCAACACAAGGAGACTGAAAACAGA
TCCAATTTAAATACAGAGGTAGTTGTGGTTAATTTGCTTTGATCAGAtta
ttttcgcgagattaaatcaCGTGAGATTACTTacgcgaaacttttttaaa
acGCTGATTTTTGATTCGCAAATCTTTTGgctcgcaaaattaaatcttgC
AAAGATTTTAAATACGATCTAAATGATTTCTAGCATCTATAtcgtatttt
tgtctcgatcctccgtccaATATATACGATCTAAATATATTGCATCAAAT
TTCTACTAGAAGCCGTTTTTCGAAATCTTAATTGAATATAGGGTCACGTC
TGTTTGTGCCGTAACGTGAAGTTATATCATTCAGCTATTGTACGCAAGTC
TGCGGGCTAGGTCACACTAAAGATTTCCAAGATTGCATTTGGTACCTCTT
TTACTTGATGCTCAGCAGCTAGAGACACAGACCCAGGAAAATGAGAGTGG
ctccctcccctaccttcggataGTCCTAAAGAAAAGAGAGCCTCTGGGTT
TCCTTCAAGTTGGGTCGGAAACTTACGTATATATGGCGTGTTTCTATAGA
TCACCTCCAATATAACAAACCAGGTTATTTCGTTTTCCTTGATTTAATCT
TGTAATGCATCAATTATACAGGTCAAAAATTTGCGATCGAAGAAAAGTCA
ATTGGAAAATCGTGTATCAGACCTGGAAAAGGTAGATTTCATTTCTCTTT
TAGAATTGAAGTTatatatttctttaaaattatctgcatagttcaaattt
tcttttcgacCCTTATAATTATAATGATATTTTACGACCGCCTACGTCGT
AGGTTTGGCCTGGACGGAACAATCTCTAATGTTTGCGAGAGACTAATTCC
ATACCAGACCTCCCTAATTTCTTGCTCATGGTAATTGCACAAAACCTatt
catgtttttgttttcaagactTGATCCACCAAAGTTTTCACGGGACGACC
TTTCTTTATATAACGATCGTCATTAAACATGAGCATTTTTGTTGTCTTCC
CTATTCTTTAATTACGGTGTGTTTATTTTCGCTAACAGGCTTTTTACAAA
CAATTATCAAAGATCAAAGAGTTTGAATCACAATTCAAAGAAATGAAAGA
ACAACGTGATATTTCAATGATAGTAAGGTCTTGTTTGAAAACCCCAACTA
GTATGTACCCTTCTGTCCACTTTTTCTCTTAGtttgaaccacaagtgatt
ttgtgGTTTAGAGAGGTTGGCTAACTCGATCTGGCCAGCCAGGGTGCAGT
ACGCAGTGCTGATGAGTcccaataaggacgaaatgcatatgctgctctgc
cacccaaatctcctgagtgaatatagttggacagaaatttttgatttctt
cacatatataaaaaaattcacgaATATAAGTTGGCTAggtgaatttcttt
tttaaagtttaaagagTAGACTTGTTCCCTTTGTATGATATGTAGTGTTC
CCTTTTTCCTTGGTTACGTCTTGTCATCAAATTCCAAAACACTTAGAATA
ATCTGCTTCAttatttcgttttttatatgttaggccaaagaagaagaaat
agCTGAGTTGAAACAACAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028579-exon-sc0000692-1491911889:9195..9247 | TCONS_00028579-exon-sc0000692-1491911889:9195..9247 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1510915933:9195..9247 | TCONS_00028579-exon-sc0000692-1510915933:9195..9247 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1575043694:9195..9247 | TCONS_00028579-exon-sc0000692-1575043694:9195..9247 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1491911889:9775..9876 | TCONS_00028579-exon-sc0000692-1491911889:9775..9876 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1510915933:9775..9876 | TCONS_00028579-exon-sc0000692-1510915933:9775..9876 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1575043694:9775..9876 | TCONS_00028579-exon-sc0000692-1575043694:9775..9876 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1491911889:13255..13462 | TCONS_00028579-exon-sc0000692-1491911889:13255..13462 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1510915933:13255..13462 | TCONS_00028579-exon-sc0000692-1510915933:13255..13462 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1575043694:13255..13462 | TCONS_00028579-exon-sc0000692-1575043694:13255..13462 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1491911889:14066..14125 | TCONS_00028579-exon-sc0000692-1491911889:14066..14125 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1510915933:14066..14125 | TCONS_00028579-exon-sc0000692-1510915933:14066..14125 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1575043694:14066..14125 | TCONS_00028579-exon-sc0000692-1575043694:14066..14125 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1491911889:14483..14566 | TCONS_00028579-exon-sc0000692-1491911889:14483..14566 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1510915933:14483..14566 | TCONS_00028579-exon-sc0000692-1510915933:14483..14566 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1575043694:14483..14566 | TCONS_00028579-exon-sc0000692-1575043694:14483..14566 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1491911889:14978..15017 | TCONS_00028579-exon-sc0000692-1491911889:14978..15017 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1510915933:14978..15017 | TCONS_00028579-exon-sc0000692-1510915933:14978..15017 | Clytia hemisphaerica | exon |
| TCONS_00028579-exon-sc0000692-1575043694:14978..15017 | TCONS_00028579-exon-sc0000692-1575043694:14978..15017 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000692 | supercontig | sc0000692:9195..15017 + |
Blast
The following BLAST results are available for this feature:
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