TCONS_00028578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028578
Unique NameTCONS_00028578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1170

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028578 ID=TCONS_00028578|Name=TCONS_00028578|organism=Clytia hemisphaerica|type=transcript|length=1170bp
agaaataataaaaataacaacaacaatcATGGATGAATTTTCCTACCTTT
CTGAATTTCCCGACAACATTAGCACTAATAGTGATGATACAGATTTCTTG
TTGTCATCAAACGTAGACAAGCTTGTTCTACAGCGAGATGGCGAGGTTGA
TTCTGATGATCAAGACACAGTTTGTTTAACAACTGAAGAAAATTACAAGT
TTACCTCCTTCGCGAAGAATAATGGTTGTGATCAAAGGTCAGATATCACT
GACGCCACAGCTGATTTGAGCTTTGTCCAACGGTTGAAGTCATCATATAA
ACCTCATGTCCATGAAGTATCAGTTGTAACAACTTCTCATGATCCCTTGA
TGAATTTAATGAATgaagaggaaaaagaagaatttgaaaagatGGATGAA
AAAGTGAGAGAGGGTcagaacattatcaataaacttCTCGCTGATATTTC
AAGGAACAGAGGCCCAGCAAAATGTAATACTTCAGAAGTCAATGAAGAAG
CTCCAAGTTTCAACacaaacagtaacaccaaatacGTCACAAAGTCTTAT
GACCTTCAAACCAAATCACCAAATCTGGAAGAAAAACCCCTCAAGTCTCA
AGAAGATTATTACGAAGAAAGTTACCATCATGAAACTGAAGCAAATACCT
CAAGATTACTCAAATGGAAGCTTAATAGCTCACTGGACAATAGTTTACAA
AATGAGGTCACCTTTCTCAAAGATGAGTTAGCCAATTTGGAAATGAAGAA
AAGCCAGGAAATCTTAACACTAAGCGAGAGAACTGAGCGACAAATCAGCA
CTCTTCATGTCCTCCGCCACAAAAGAGAAAAACTTGATACAAGAAGAGAA
CGAACAGCTGAAAGAATCACTTTCCAAGAAAGAACATCTTTGTTTACAAC
TGCAAGaaatattgaatgaaaaatcaCAACAAATCGTCCGCATGCAACAC
AAGGAGACTGAAAACAGATCCAATTTAAATACAGAGGTCAAAAATTTGCG
ATCGAAGAAAAGTCAATTGGAAAATCGTGTATCAGACCTGGAAAAGGCTT
TTTACAAACAATTATCAAAGATCAAAGAGTTTGAATCACAATTCAAAGAA
ATGAAAGAACAACGTGATATTTCAATGATAgccaaagaagaagaaatagC
TGAGTTGAAACAACAAAACG
Run BLAST on NCBI

protein sequence of TCONS_00028578-protein

>TCONS_00028578-protein ID=TCONS_00028578-protein|Name=TCONS_00028578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
EIIKITTTIMDEFSYLSEFPDNISTNSDDTDFLLSSNVDKLVLQRDGEVD
SDDQDTVCLTTEENYKFTSFAKNNGCDQRSDITDATADLSFVQRLKSSYK
PHVHEVSVVTTSHDPLMNLMNEEEKEEFEKMDEKVREGQNIINKLLADIS
RNRGPAKCNTSEVNEEAPSFNTNSNTKYVTKSYDLQTKSPNLEEKPLKSQ
EDYYEESYHHETEANTSRLLKWKLNSSLDNSLQNEVTFLKDELANLEMKK
SQEILTLSERTERQISTLHVLRHKREKLDTRRERTAERITFQERTSLFTT
ARNIE
Run BLAST on NCBI

transcript from alignment at sc0000692:4507..15017+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028578 ID=TCONS_00028578|Name=TCONS_00028578|organism=Clytia hemisphaerica|type=transcript|length=10511bp|location=Sequence derived from alignment at sc0000692:4507..15017+ (Clytia hemisphaerica)
agaaataataaaaataacaacaacaatcATGGATGAATTTTCCTACCTTT
CTGAATTTCCCGACAACATTAGCACTAATAGTGATGATACAGATTTCTTG
TTGTCATCAAACGTAGACAAGCTTGTTCTACAGCGAGATGGCGAGGTTGA
TTCTGATGATCAAGACACAGTTTGTTTAACAACTGAAGAAAATTACAAGT
TTACCTCCTTCGCGAAGAATAATGGTTGTGATCAAAGGTCAGATATCACT
GACGCCACAGCTGATTTGAGCTTTGTCCAACGGTTGAAGTCATCATATAA
ACCTCATGTCCATGAAGTATCAGTTGTAACAACTTCTCATGATCCCTTGA
TGAATTTAATGAATgaagaggaaaaagaagaatttggtatgttttgaaaa
tgactccaggccatattttagaaaggcaaggcagcgtcctttggtggcca
aaaagggcacttttccAGTGTGTTTCCACTAAAAAAGCTCTTGTTACCAg
tattttagtaatttcaagagGAGCAGTGTTCAATAATTGGACgcttaaag
ggcatgaaaaatggcctagACTTGTGTCTATGTGTTCTTTTCCATTCGAT
CATCCTAAATATAAAGCCAAAAGCCTTCTTTTGTACTGTGAATAATGATC
TAAACTTCTGCCTTTACGTTACCAAGTTTTTGTTTGAGCTTCAATAAATG
ATCTAAATTTATAACACTACTTACAATTGTTACTTGGTGTTTCAAGTTGG
TGCAGTCTTCAGGCAATGCAGTGTATTGTAgattttgtttccttttttct
atttttatttcattattttttaaattgattgCGCCTGCATGACACTGTGT
AGCAATTGTAAGTTAGTTATTTATTTCTCGATATTTCACTCgaatttttt
tgaacttttttgagcaCTTTGTGCCACAAAAGTTTACAATTCTTATCTAA
GCTTAGAAGAAAatggaactttttttttcttttcagaaaagatGGATGAA
AAAGTGAGAGAGGGTcagaacattatcaataaacttCTTGCAGATATTTC
AAGGAACAGGTTTGATGATATGTAGAGAGGGTcagaacattatcaataaa
cttCTTGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCTTGTTGATATTTCAAGAAACAGGTTTGATGAT
ATGTAGAGAGGGTcagaacattatcaataaacttCTCGCTGATATTTCAA
GGAACAGGTTTGATGATATGTATCTCCTCTTCTGGAAGCtagtgaaaatt
ttgaaaacacagaaatttgccaaaacctctaggaaaatgaaagacaTTAG
TTGAAAAAGGTGTACCAATTCCCGAAAATAAcacagatgagatggagttt
ttataagatattttaataattggtcatttgaagtaataaaaatgacgcgt
tctttagaaaaagtaacaaaattgttttattactggttaacaaccaacca
aatcaaacaagagcttttaaaaactccatctcgtcccaaatAACTCCTGT
GAAaactaaattatttttgaaaataattgtcTAGCGAAACTGAGCGAAAA
TATCTACTCGCAAAAATTAACCCACTTATTGAGATATTTACATCTATCGT
TACCCAACTTCTTTATTACAAGTGAAATGCCTTTTATGTAAATTtacaat
tcaaaaataaatgatcTTTAAAGTTCTTTATTCAGAGGCCCAGCAAAATG
TAATACTTCAGAAGTCAATGAAGAAGCTCCAAGTAAGAAATTGTTCTTGT
AGTTTCGTGTTTTCTTACTATCCCAACAAGATATGAAACTTTTTCCCATG
GCTTATATGAAAGAACAAGGTTTTAAGAAACGCTgaaaaaaagaatgtag
tcAATTTTATCTGTAGCTAtgatttttcaatatatttttagCTAAAGTCG
TTTACTCCATGGTATTCTAATTACTCGCATTGCATCATCatgaaaatctc
taaaaaatgtATCCCTTAGGGTCGCAGAATATTTTAATCTCGACTTCGAT
TTCTttcttcaatgcaacgactttgaaaaattgagctCCCACAAAATCGA
AGTTGATGCACGCTTGCTTGGCCTATGGATTTAGAACGCCTTGGTTAACT
CCCATCTTGTCTTCTCCGTAggtttcaaaacaaacaataacACCAAACAC
GTCACAAAATCTTATGACCTTCAATCCAAATCACCAGCTGCGGAGGAAAA
ACCCTTCAAGTCTCAAGAAGATTATTACGAAGAAAGTTATTATCATGAAA
ATGAAGCAAATACCTCAAGATTACTCAAATGGAAGCTTAATGTATgttaa
aaatgcaattttctaTTTATCTGTCAACGTTGCGGTGTATTATtttacgc
tttttttataagaaccagtaaagttTTTCTGAGGctcagctgttcttatt
tttttggcactttgagcctgaaattgttcttatcctgttcttttgATGTA
ATTGGATGTAATTGGGGTATCTTAGGCGTtataccaaattttttttctta
aacccCNATGTAATTGGGGTATCTTAGGCGTtataccaaattttttttct
taaacccctaaattgcttgaaattgagtaaattTAGGCTCAGCaatgttc
ttaaattattcttatttcttgccgattttgagcctcattgttcttataaa
aaaatagtgTTTTATGGTGTTTCACAGGTATGCAAAGAGATTCAATTCAA
ATTCGTGTTTATTTGTCTTCTGAAAAGGGTGAATTTGACCGAAATATTAC
AAGCAGTTTTTGTCCAACCAAAGTATTTCAGTGTAAACACATTCTTTGCT
ATGATTTTTTACTTTCAGAGCTCACTGGACAATAGTTTACAAAATGAGGT
CACTTTTCTCAAAGATGAGTTAGCCAATTTGGAAATGAAGAAAAGTCAGG
AAATCTTAACACTAAGCGAGGTAAACAATTATTGGATACATGTAAAGTTT
CAAGTGGTCAAAACTTAATTGAAATGTCTCTGAAAAATAGACCATTGAGA
CCAAAAATAATTGTTACTCTCTGGGCTAGCTAGGGGGTTTGGGGGGTGTT
Gttgggttggaaaaaaatgtactgggtggaaaattttgaaaaggaggcta
atacagcagaattagggcaaaagagggaactttttgttgattgttggaat
aaaaatgtcttgagtggtaaattttcgaaaattaatgagcggggggacgc
ttattaggcacctgagagtaacCAGGAACAAAGGAGAGCCATCATATAGG
TGGATGTCTTTAGCAATGATCAAAAACTGAATGAGAACCTTTGATTCGAA
AACCTTTGATTCGAAAACCTTTcgattttgccaaaaaaagtttttttaca
caTATCATACTCAAAttaaagtacacgttttttttataagaacatccaac
atttttgaagccttcgaatgttcttaaccaTTTGAGTTTATAGCCTTTTG
AGCCTATAAATGTTtttaacgtgttcttattttgaccattttccgagcat
ttttgcccattttgcGGTGTTTTAGaatctgcaaagccttaaaatgttct
taacttgttcttaacattttggccatcgaagttttattttcttatattgt
tcttataaaaaacgtatttGCTTAGCTTTTACTTCATTGCTAATGTACTA
GAGAACTGAGCGACAAATCAGCACTCTTCAGAAGAAATTGTCCACCACCA
CAAAAGAGAAAGACTTGATACAAGAAGAGAACGAACAGCTGAAAGAATCA
CTTTCAAAGAAAGAACATCTTTGTTTACAACTGCAAGaaatattgaatga
aaaatcaCAACAAATCGTCCGTATGCAACACCAGGAGACTGAAAACAGAT
CCAATTTAAATACAGAGGTAGTTGTTaattcacttttatttttcaccctc
agaatcaaaaaaattttcaaaacgcTGATTCACAAATCTTTTggctcgcg
aaattaaatctcaCAAAGATTAATACGATCTAAATAACCTCTAGTATCTA
AtcgtatttttgtctcgatccttCGTCCAATATATACGATCTAAATATAT
TGCATCAAATTTCTACTAGAAGCCGTTTTTCACGTCTGTTTTAATAAAGG
TGTGCCCTAACATGAAGTTAGATCATCCAGCTACTGTACTCAAGGTTGTG
GAGTAGGTCACACTAAAGATTGCCAAAATTGCATGCATTCGGTACATCTT
TAACTTGATGCTCGGCAGCTAGAGGGGAAtgagagtggcgccctccccta
ccttcggataGTCCTAAAGAAAAGAGAGCATTGGGTCTCCCTCAACTTGG
GTTGGAAACTTACGTATGTTATAATGGTGCGTTTCTATAGATCACCTCCA
ATGCAACAAACCAGGTTGTTTAGTTTTCCTTGATTTAATTATGTAATGCA
TCAATTATATAGGTAAAAAATTTGCGATCGAAGAAAAGTCAATTGGAAAA
TCGTGTATCAGACCTAGAAAAGGTAGATTTCATTTCTCTTTTAGAATTGA
AGTTatcttctatttcttcaaaattatCTGCAtagttcaaattttctttt
caacccTTATAATTATAATANAcatggacccccccccctggcatAGATTG
TCACGAAAATCTCTCAAAAATGTATATCCCTTAGAGTCGCAAATTATTAA
GTTTATGAGTGTGGAAGAGCAGAATATTTTAATCTTAactttgatttcgt
tttttaAAAGTCTGAAAGTACTTAATGCACTTTAAATGTTCCAAGAACAC
AGTTTGGACAGCGACTcataaacattcaaaaatcttAGAATGGAGATATA
ATTTGTGCCTGAAACTCAAACCTAGATTAACGCAccgaatcaaaagaaaa
attcttttttgtacTAAAATTCTTGCTCCGTGGTACATTTTGTACTAGCT
CGTCAATACAACGACTTTGAAGAATTGAGCCCTCACAAAATCGAAGTTGC
TGCACGCTTGCTTGGCCTATGGATTTGGAACACCTTGGTTAACTCCCATC
TTTCATGTTCTCTCCTTAGGTTTCAACacaaacagtaacaccaaatacGT
CACAAAGTCTTATGACCTTCAAACCAAATCACCAAATCTGGAAGAAAAAC
CCCTCAAGTCTCAAGAAGATTATTACGAAGAAAGTTACCATCATGAAACT
GAAGCAAATACCTCAAGATTACTCAAATGGAAGCTTAATGTATGTTCaaa
atgctattttctattTATCTGTCAACGTTGCGGTGTATTAcactttttta
cacttttttttttaagaaccagtAAAGTTTTTCTGAacctcggctgttct
tatttttttggcactttgagcctgaaattgttcttatcctgttcttactT
ATTGGATGTAATTGGGGTATAttaggcgttatacccaatttttacttctt
tgacccctaaattgcttgaaattgagtaaattttggctcagcaatgttct
taaattattctaatttttgccgattttgagccttattgttcttataaaaa
atagttttaTGGTGTTTCACAGGTATACAAAGGGATTCAATTCAAACTCG
TGTTTATTTGTCTTCTGAAAAGGGtgaatttgaccaaaatattacaACTG
GAGTCTTTTTCAAGGAGTTTTTGTCCAACCAAAGTATTTCAGTGTAAATA
CACTCTTTGCTATGATTATTTACTTTCAGAGCTCACTGGACAATAGTTTA
CAAAATGAGGTCACCTTTCTCAAAGATGAGTTAGCCAATTTGGAAATGAA
GAAAAGCCAGGAAATCTTAACACTAAGCGAGGTAAACAATTATTGGATAC
ATATAAAGTTTCAAGTGGtcgaaattaaattgaaatgtcTCTGAAAAATA
GACCATTGAGACCAAAAATAATTGTTACTCTCGGGGCTAGGtagggggtt
tggaataagcgggggggggggctgaagttgggttggaaaaaaatgtactg
ggtggaaaattttgaaaaggacGCTAATatagcagaattagggcaaaaga
gggaactttttcccaaaaattattAAGGGGGGGGGTGATTgttcgaataa
aaatgtcttgagtggaaaattttcgaaaattaatgggcgggggacgctta
ttaggcacctgagagtaacCAGGAACAGAGAAGAGCCATCCTATAGGTTT
ATGTCTTTAGCAATGATCAAAAACTGAATGACAACCATTGATTCGAAAAC
CTTTTGCCAGAAAAAGTCTTTTACACATCATGATACTCAAATTAAAGTAT
TTGCTTAGCTTTTACTCCATTGTAAAATGTGCTAACTATATGTACTAGAG
AACTGAGCGACAAATCAGCACTCTTCATGTCCTCCGCCACAAAAGAGAAA
AACTTGATACAAGAAGAGAACGAACAGCTGAAAGAATCACTTTCCAAGAA
AGAACATCTTTGTTTACAACTGCAAGaaatattgaatgaaaaatcaCAAC
AAATCGTCCGCATGCAACACAAGGAGACTGAAAACAGATCCAATTTAAAT
ACAGAGGTAGTTGTGGTTAATTTGCTTTGATCAGAttattttcgcgagat
taaatcaCGTGAGATTACTTacgcgaaacttttttaaaacGCTGATTTTT
GATTCGCAAATCTTTTGgctcgcaaaattaaatcttgCAAAGATTTTAAA
TACGATCTAAATGATTTCTAGCATCTATAtcgtatttttgtctcgatcct
ccgtccaATATATACGATCTAAATATATTGCATCAAATTTCTACTAGAAG
CCGTTTTTCGAAATCTTAATTGAATATAGGGTCACGTCTGTTTGTGCCGT
AACGTGAAGTTATATCATTCAGCTATTGTACGCAAGTCTGCGGGCTAGGT
CACACTAAAGATTTCCAAGATTGCATTTGGTACCTCTTTTACTTGATGCT
CAGCAGCTAGAGACACAGACCCAGGAAAATGAGAGTGGctccctccccta
ccttcggataGTCCTAAAGAAAAGAGAGCCTCTGGGTTTCCTTCAAGTTG
GGTCGGAAACTTACGTATATATGGCGTGTTTCTATAGATCACCTCCAATA
TAACAAACCAGGTTATTTCGTTTTCCTTGATTTAATCTTGTAATGCATCA
ATTATACAGGTCAAAAATTTGCGATCGAAGAAAAGTCAATTGGAAAATCG
TGTATCAGACCTGGAAAAGGTAGATTTCATTTCTCTTTTAGAATTGAAGT
TatatatttctttaaaattatctgcatagttcaaattttcttttcgacCC
TTATAATTATAATGATATTTTACGACCGCCTACGTCGTAGGTTTGGCCTG
GACGGAACAATCTCTAATGTTTGCGAGAGACTAATTCCATACCAGACCTC
CCTAATTTCTTGCTCATGGTAATTGCACAAAACCTattcatgtttttgtt
ttcaagactTGATCCACCAAAGTTTTCACGGGACGACCTTTCTTTATATA
ACGATCGTCATTAAACATGAGCATTTTTGTTGTCTTCCCTATTCTTTAAT
TACGGTGTGTTTATTTTCGCTAACAGGCTTTTTACAAACAATTATCAAAG
ATCAAAGAGTTTGAATCACAATTCAAAGAAATGAAAGAACAACGTGATAT
TTCAATGATAGTAAGGTCTTGTTTGAAAACCCCAACTAGTATGTACCCTT
CTGTCCACTTTTTCTCTTAGtttgaaccacaagtgattttgtgGTTTAGA
GAGGTTGGCTAACTCGATCTGGCCAGCCAGGGTGCAGTACGCAGTGCTGA
TGAGTcccaataaggacgaaatgcatatgctgctctgccacccaaatctc
ctgagtgaatatagttggacagaaatttttgatttcttcacatatataaa
aaaattcacgaATATAAGTTGGCTAggtgaatttcttttttaaagtttaa
agagTAGACTTGTTCCCTTTGTATGATATGTAGTGTTCCCTTTTTCCTTG
GTTACGTCTTGTCATCAAATTCCAAAACACTTAGAATAATCTGCTTCAtt
atttcgttttttatatgttaggccaaagaagaagaaatagCTGAGTTGAA
ACAACAAAACG

Coding sequence (CDS) from alignment at sc0000692:4507..15017+

>TCONS_00028578 ID=TCONS_00028578|Name=TCONS_00028578|organism=Clytia hemisphaerica|type=CDS|length=6426bp|location=Sequence derived from alignment at sc0000692:4507..15017+ (Clytia hemisphaerica)
gaaataataaaaataacaacaacaatcATGGATGAATTTTCCTACCTTTC
TGAATTTCCCGACAACATTAGCACTAATAGTGATGATACAGATTTCTTGT
TGTCATCAAACGTAGACAAGCTTGTTCTACAGCGAGATGGCGAGGTTGAT
TCTGATGATCAAGACACAGTTTGTTTAACAACTGAAGAAAATTACAAGTT
TACCTCCTTCGCGAAGAATAATGGTTGTGATCAAAGGTCAGATATCACTG
ACGCCACAGCTGATTTGAGCTTTGTCCAACGGTTGAAGTCATCATATAAA
CCTCATGTCCATGAAGTATCAGTTGTAACAACTTCTCATGATCCCTTGAT
GAATTTAATGAATgaagaggaaaaagaagaatttgaaaagatGGATGAAA
AAGTGAGAGAGGGTcagaacattatcaataaacttCTCGCTGATATTTCA
AGGAACAGAGGCCCAGCAAAATGTAATACTTCAGAAGTCAATGAAGAAGC
TCCAAGTTTCAACacaaacagtaacaccaaatacGTCACAAAGTCTTATG
ACCTTCAAACCAAATCACCAAATCTGGAAGAAAAACCCCTCAAGTCTCAA
GAAGATTATTACGAAGAAAGTTACCATCATGAAACTGAAGCAAATACCTC
AAGATTACTCAAATGGAAGCTTAATAGCTCACTGGACAATAGTTTACAAA
ATGAGGTCACCTTTCTCAAAGATGAGTTAGCCAATTTGGAAATGAAGAAA
AGCCAGGAAATCTTAACACTAAGCGAGAGAACTGAGCGACAAATCAGCAC
TCTTCATGTCCTCCGCCACAAAAGAGAAAAACTTGATACAAGAAGAGAAC
GAACAGCTGAAAGAATCACTTTCCAAGAAAGAACATCTTTGTTTACAACT
GCAAGaaatattgaatgagaaataataaaaataacaacaacaatcATGGA
TGAATTTTCCTACCTTTCTGAATTTCCCGACAACATTAGCACTAATAGTG
ATGATACAGATTTCTTGTTGTCATCAAACGTAGACAAGCTTGTTCTACAG
CGAGATGGCGAGGTTGATTCTGATGATCAAGACACAGTTTGTTTAACAAC
TGAAGAAAATTACAAGTTTACCTCCTTCGCGAAGAATAATGGTTGTGATC
AAAGGTCAGATATCACTGACGCCACAGCTGATTTGAGCTTTGTCCAACGG
TTGAAGTCATCATATAAACCTCATGTCCATGAAGTATCAGTTGTAACAAC
TTCTCATGATCCCTTGATGAATTTAATGAATgaagaggaaaaagaagaat
ttgaaaagatGGATGAAAAAGTGAGAGAGGGTcagaacattatcaataaa
cttCTCGCTGATATTTCAAGGAACAGAGGCCCAGCAAAATGTAATACTTC
AGAAGTCAATGAAGAAGCTCCAAGTTTCAACacaaacagtaacaccaaat
acGTCACAAAGTCTTATGACCTTCAAACCAAATCACCAAATCTGGAAGAA
AAACCCCTCAAGTCTCAAGAAGATTATTACGAAGAAAGTTACCATCATGA
AACTGAAGCAAATACCTCAAGATTACTCAAATGGAAGCTTAATAGCTCAC
TGGACAATAGTTTACAAAATGAGGTCACCTTTCTCAAAGATGAGTTAGCC
AATTTGGAAATGAAGAAAAGCCAGGAAATCTTAACACTAAGCGAGAGAAC
TGAGCGACAAATCAGCACTCTTCATGTCCTCCGCCACAAAAGAGAAAAAC
TTGATACAAGAAGAGAACGAACAGCTGAAAGAATCACTTTCCAAGAAAGA
ACATCTTTGTTTACAACTGCAAGaaatattgaatgagaaataataaaaat
aacaacaacaatcATGGATGAATTTTCCTACCTTTCTGAATTTCCCGACA
ACATTAGCACTAATAGTGATGATACAGATTTCTTGTTGTCATCAAACGTA
GACAAGCTTGTTCTACAGCGAGATGGCGAGGTTGATTCTGATGATCAAGA
CACAGTTTGTTTAACAACTGAAGAAAATTACAAGTTTACCTCCTTCGCGA
AGAATAATGGTTGTGATCAAAGGTCAGATATCACTGACGCCACAGCTGAT
TTGAGCTTTGTCCAACGGTTGAAGTCATCATATAAACCTCATGTCCATGA
AGTATCAGTTGTAACAACTTCTCATGATCCCTTGATGAATTTAATGAATg
aagaggaaaaagaagaatttgaaaagatGGATGAAAAAGTGAGAGAGGGT
cagaacattatcaataaacttCTCGCTGATATTTCAAGGAACAGAGGCCC
AGCAAAATGTAATACTTCAGAAGTCAATGAAGAAGCTCCAAGTTTCAACa
caaacagtaacaccaaatacGTCACAAAGTCTTATGACCTTCAAACCAAA
TCACCAAATCTGGAAGAAAAACCCCTCAAGTCTCAAGAAGATTATTACGA
AGAAAGTTACCATCATGAAACTGAAGCAAATACCTCAAGATTACTCAAAT
GGAAGCTTAATAGCTCACTGGACAATAGTTTACAAAATGAGGTCACCTTT
CTCAAAGATGAGTTAGCCAATTTGGAAATGAAGAAAAGCCAGGAAATCTT
AACACTAAGCGAGAGAACTGAGCGACAAATCAGCACTCTTCATGTCCTCC
GCCACAAAAGAGAAAAACTTGATACAAGAAGAGAACGAACAGCTGAAAGA
ATCACTTTCCAAGAAAGAACATCTTTGTTTACAACTGCAAGaaatattga
atgagaaataataaaaataacaacaacaatcATGGATGAATTTTCCTACC
TTTCTGAATTTCCCGACAACATTAGCACTAATAGTGATGATACAGATTTC
TTGTTGTCATCAAACGTAGACAAGCTTGTTCTACAGCGAGATGGCGAGGT
TGATTCTGATGATCAAGACACAGTTTGTTTAACAACTGAAGAAAATTACA
AGTTTACCTCCTTCGCGAAGAATAATGGTTGTGATCAAAGGTCAGATATC
ACTGACGCCACAGCTGATTTGAGCTTTGTCCAACGGTTGAAGTCATCATA
TAAACCTCATGTCCATGAAGTATCAGTTGTAACAACTTCTCATGATCCCT
TGATGAATTTAATGAATgaagaggaaaaagaagaatttgaaaagatGGAT
GAAAAAGTGAGAGAGGGTcagaacattatcaataaacttCTCGCTGATAT
TTCAAGGAACAGAGGCCCAGCAAAATGTAATACTTCAGAAGTCAATGAAG
AAGCTCCAAGTTTCAACacaaacagtaacaccaaatacGTCACAAAGTCT
TATGACCTTCAAACCAAATCACCAAATCTGGAAGAAAAACCCCTCAAGTC
TCAAGAAGATTATTACGAAGAAAGTTACCATCATGAAACTGAAGCAAATA
CCTCAAGATTACTCAAATGGAAGCTTAATAGCTCACTGGACAATAGTTTA
CAAAATGAGGTCACCTTTCTCAAAGATGAGTTAGCCAATTTGGAAATGAA
GAAAAGCCAGGAAATCTTAACACTAAGCGAGAGAACTGAGCGACAAATCA
GCACTCTTCATGTCCTCCGCCACAAAAGAGAAAAACTTGATACAAGAAGA
GAACGAACAGCTGAAAGAATCACTTTCCAAGAAAGAACATCTTTGTTTAC
AACTGCAAGaaatattgaatgagaaataataaaaataacaacaacaatcA
TGGATGAATTTTCCTACCTTTCTGAATTTCCCGACAACATTAGCACTAAT
AGTGATGATACAGATTTCTTGTTGTCATCAAACGTAGACAAGCTTGTTCT
ACAGCGAGATGGCGAGGTTGATTCTGATGATCAAGACACAGTTTGTTTAA
CAACTGAAGAAAATTACAAGTTTACCTCCTTCGCGAAGAATAATGGTTGT
GATCAAAGGTCAGATATCACTGACGCCACAGCTGATTTGAGCTTTGTCCA
ACGGTTGAAGTCATCATATAAACCTCATGTCCATGAAGTATCAGTTGTAA
CAACTTCTCATGATCCCTTGATGAATTTAATGAATgaagaggaaaaagaa
gaatttgaaaagatGGATGAAAAAGTGAGAGAGGGTcagaacattatcaa
taaacttCTCGCTGATATTTCAAGGAACAGAGGCCCAGCAAAATGTAATA
CTTCAGAAGTCAATGAAGAAGCTCCAAGTTTCAACacaaacagtaacacc
aaatacGTCACAAAGTCTTATGACCTTCAAACCAAATCACCAAATCTGGA
AGAAAAACCCCTCAAGTCTCAAGAAGATTATTACGAAGAAAGTTACCATC
ATGAAACTGAAGCAAATACCTCAAGATTACTCAAATGGAAGCTTAATAGC
TCACTGGACAATAGTTTACAAAATGAGGTCACCTTTCTCAAAGATGAGTT
AGCCAATTTGGAAATGAAGAAAAGCCAGGAAATCTTAACACTAAGCGAGA
GAACTGAGCGACAAATCAGCACTCTTCATGTCCTCCGCCACAAAAGAGAA
AAACTTGATACAAGAAGAGAACGAACAGCTGAAAGAATCACTTTCCAAGA
AAGAACATCTTTGTTTACAACTGCAAGaaatattgaatgagaaataataa
aaataacaacaacaatcATGGATGAATTTTCCTACCTTTCTGAATTTCCC
GACAACATTAGCACTAATAGTGATGATACAGATTTCTTGTTGTCATCAAA
CGTAGACAAGCTTGTTCTACAGCGAGATGGCGAGGTTGATTCTGATGATC
AAGACACAGTTTGTTTAACAACTGAAGAAAATTACAAGTTTACCTCCTTC
GCGAAGAATAATGGTTGTGATCAAAGGTCAGATATCACTGACGCCACAGC
TGATTTGAGCTTTGTCCAACGGTTGAAGTCATCATATAAACCTCATGTCC
ATGAAGTATCAGTTGTAACAACTTCTCATGATCCCTTGATGAATTTAATG
AATgaagaggaaaaagaagaatttgaaaagatGGATGAAAAAGTGAGAGA
GGGTcagaacattatcaataaacttCTCGCTGATATTTCAAGGAACAGAG
GCCCAGCAAAATGTAATACTTCAGAAGTCAATGAAGAAGCTCCAAGTTTC
AACacaaacagtaacaccaaatacGTCACAAAGTCTTATGACCTTCAAAC
CAAATCACCAAATCTGGAAGAAAAACCCCTCAAGTCTCAAGAAGATTATT
ACGAAGAAAGTTACCATCATGAAACTGAAGCAAATACCTCAAGATTACTC
AAATGGAAGCTTAATAGCTCACTGGACAATAGTTTACAAAATGAGGTCAC
CTTTCTCAAAGATGAGTTAGCCAATTTGGAAATGAAGAAAAGCCAGGAAA
TCTTAACACTAAGCGAGAGAACTGAGCGACAAATCAGCACTCTTCATGTC
CTCCGCCACAAAAGAGAAAAACTTGATACAAGAAGAGAACGAACAGCTGA
AAGAATCACTTTCCAAGAAAGAACATCTTTGTTTACAACTGCAAGaaata
ttgaatgagaaataataaaaataacaacaacaatcATGGATGAATTTTCC
TACCTTTCTGAATTTCCCGACAACATTAGCACTAATAGTGATGATACAGA
TTTCTTGTTGTCATCAAACGTAGACAAGCTTGTTCTACAGCGAGATGGCG
AGGTTGATTCTGATGATCAAGACACAGTTTGTTTAACAACTGAAGAAAAT
TACAAGTTTACCTCCTTCGCGAAGAATAATGGTTGTGATCAAAGGTCAGA
TATCACTGACGCCACAGCTGATTTGAGCTTTGTCCAACGGTTGAAGTCAT
CATATAAACCTCATGTCCATGAAGTATCAGTTGTAACAACTTCTCATGAT
CCCTTGATGAATTTAATGAATgaagaggaaaaagaagaatttgaaaagat
GGATGAAAAAGTGAGAGAGGGTcagaacattatcaataaacttCTCGCTG
ATATTTCAAGGAACAGAGGCCCAGCAAAATGTAATACTTCAGAAGTCAAT
GAAGAAGCTCCAAGTTTCAACacaaacagtaacaccaaatacGTCACAAA
GTCTTATGACCTTCAAACCAAATCACCAAATCTGGAAGAAAAACCCCTCA
AGTCTCAAGAAGATTATTACGAAGAAAGTTACCATCATGAAACTGAAGCA
AATACCTCAAGATTACTCAAATGGAAGCTTAATAGCTCACTGGACAATAG
TTTACAAAATGAGGTCACCTTTCTCAAAGATGAGTTAGCCAATTTGGAAA
TGAAGAAAAGCCAGGAAATCTTAACACTAAGCGAGAGAACTGAGCGACAA
ATCAGCACTCTTCATGTCCTCCGCCACAAAAGAGAAAAACTTGATACAAG
AAGAGAACGAACAGCTGAAAGAATCACTTTCCAAGAAAGAACATCTTTGT
TTACAACTGCAAGaaatattgaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016208XLOC_016208Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028578-proteinTCONS_00028578-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028578-exon-sc0000692-1491911889:4507..4892TCONS_00028578-exon-sc0000692-1491911889:4507..4892Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1510915933:4507..4892TCONS_00028578-exon-sc0000692-1510915933:4507..4892Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1575043694:4507..4892TCONS_00028578-exon-sc0000692-1575043694:4507..4892Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1491911889:5493..5527TCONS_00028578-exon-sc0000692-1491911889:5493..5527Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1510915933:5493..5527TCONS_00028578-exon-sc0000692-1510915933:5493..5527Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1575043694:5493..5527TCONS_00028578-exon-sc0000692-1575043694:5493..5527Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1491911889:8126..8163TCONS_00028578-exon-sc0000692-1491911889:8126..8163Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1510915933:8126..8163TCONS_00028578-exon-sc0000692-1510915933:8126..8163Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1575043694:8126..8163TCONS_00028578-exon-sc0000692-1575043694:8126..8163Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1491911889:8642..8688TCONS_00028578-exon-sc0000692-1491911889:8642..8688Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1510915933:8642..8688TCONS_00028578-exon-sc0000692-1510915933:8642..8688Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1575043694:8642..8688TCONS_00028578-exon-sc0000692-1575043694:8642..8688Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1491911889:11976..12145TCONS_00028578-exon-sc0000692-1491911889:11976..12145Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1510915933:11976..12145TCONS_00028578-exon-sc0000692-1510915933:11976..12145Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1575043694:11976..12145TCONS_00028578-exon-sc0000692-1575043694:11976..12145Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1491911889:12636..12737TCONS_00028578-exon-sc0000692-1491911889:12636..12737Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1510915933:12636..12737TCONS_00028578-exon-sc0000692-1510915933:12636..12737Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1575043694:12636..12737TCONS_00028578-exon-sc0000692-1575043694:12636..12737Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1491911889:13255..13462TCONS_00028578-exon-sc0000692-1491911889:13255..13462Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1510915933:13255..13462TCONS_00028578-exon-sc0000692-1510915933:13255..13462Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1575043694:13255..13462TCONS_00028578-exon-sc0000692-1575043694:13255..13462Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1491911889:14066..14125TCONS_00028578-exon-sc0000692-1491911889:14066..14125Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1510915933:14066..14125TCONS_00028578-exon-sc0000692-1510915933:14066..14125Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1575043694:14066..14125TCONS_00028578-exon-sc0000692-1575043694:14066..14125Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1491911889:14483..14566TCONS_00028578-exon-sc0000692-1491911889:14483..14566Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1510915933:14483..14566TCONS_00028578-exon-sc0000692-1510915933:14483..14566Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1575043694:14483..14566TCONS_00028578-exon-sc0000692-1575043694:14483..14566Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1491911889:14978..15017TCONS_00028578-exon-sc0000692-1491911889:14978..15017Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1510915933:14978..15017TCONS_00028578-exon-sc0000692-1510915933:14978..15017Clytia hemisphaericaexon
TCONS_00028578-exon-sc0000692-1575043694:14978..15017TCONS_00028578-exon-sc0000692-1575043694:14978..15017Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000692supercontigsc0000692:4507..15017 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.241691	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.488288	0.340537	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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