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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028550 ID=TCONS_00028550|Name=TCONS_00028550|organism=Clytia hemisphaerica|type=transcript|length=825bp
AAGGTTGCCCCATCCGTTCTATTTACTACGtcctttaaaaaatttgaata
gtgTTTGACCTTATGCAAGTATATCGAGTAATGGAAATTTCTGATAAAGT
TTTGTTAACTAAAAGGGTAAAGAAACTTGTTCGAGAAGGTAGAGTTTTGA
ATAGCAAAGCTGTTAATTCATTGCGattcctttttttttatagTGAACTG
ATAAAAGATAAGAAATAAATATTATTGAACTTGGCCAATAAAATGTGTTA
CAAGACAAAATGCGCAACTTGTGGAAAACCAACATGGGCTGGTTGTGGGA
TGCACATTGAGGAGGCATTAAAAGATGTTCCCGAAGATGAAAGATgccaa
tgtccacgatcaagcTGCGTTCTTCTATGAGGGAGACTTGCAACGATCAA
TGGAAATACACATGTAGACATTAACTCTATCGCTTTTATTACTCATTTAT
TAATTACTACAACGTCTCATAACCTTGGTGGAAATTTTTCCCACTGTTGG
GATAACAACTTCTGTcgaaatcctaatggggatgGAAATTGCAAGCTCAA
AAGGTTgagaaatgtttaaaattttttcattgtatttcgAGTAGGGATTA
AATAAAAATCCTTGGTTATTTTTCCCCANTTGAGAAATgcttaaaatttt
ttcattgtttttcgaGTAGGGATTAAATAAAAATCTATTTCCTTGGTTAT
TTTTCCCCAGCGGGAACAAAATTTCGGCCATACTTTATTTATTATTGTAT
TTGATTGTAAATAGTAAAATAATCTTTCAACTTGTCACAGTTGAAAATAG
TATTCTAATGCACCCTTCAAACAGA Run BLAST on NCBI transcript from alignment at sc0000691:131061..136778+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028550 ID=TCONS_00028550|Name=TCONS_00028550|organism=Clytia hemisphaerica|type=transcript|length=5718bp|location=Sequence derived from alignment at sc0000691:131061..136778+ (Clytia hemisphaerica)
AAGGTTGCCCCATCCGTTCTATTTACTACGtcctttaaaaaatttgaata
gtgTTTGACCTTATGCAAGTATATCGAGTAATGGAAATTTCTGATAAAGT
TTTGTTAACTAAAAGGGTAAAGAAACTTGTTCGAGAAGGTAGAGTTTTGA
ATAGCAAAGCTGTTAATTCATTGCGattcctttttttttatagTGAACTG
ATAAAAGATAAGAAATAAATATTATTGAACTTGGCCAATAAAATGTGTTA
CAAGACAAAATGCGCAACTTGTGGAAAACCAACATGGGCTGGTAAGTTAG
TTACACgcttttgttttacttttcgcgtttttataagaacataaggtttc
gatggccaaaatattatgaACATTCAAAGACTTAAACAATTTGGATgtcc
ttattaaaaaaacgtattGTACTGTTTTGTTTGCCCGGGTGGTTGAGAAG
GTCGGAAAGAAGTAACTTTGTTCGCTCCGGAAATAATACTAGCTTCACGG
TAAAGCTCGACTCCAAAGGAGTCAGTAAAGAATTGAGANCCGGAAATAAT
ATTAGCTTCACGGTAAAGCTCGACTCCAAAGGAGTCAGTAAAGAATTGAG
ATCCTGGCTGATTTGTTGACCGACCATGGGACCAGTGCTGATGAGCCTTC
ACAAGGAAGAAATACATACACCTgttttcccagctggcacacaacgttgt
ttcgacgtttatctaatgttcagaacgtccatataacgttagatgaacgt
tgaaacaacgtgtGCCAACTGTTCTACCACCGAAACCCTTTCTCCAAGAA
TTGATATCGTTGGGCAGAAATTGTATAATTATGTCgaataccgtgaagtc
gggtaacttgcatcagtggagggaaNTGTGTGCCAACTGTTCTACCACCG
AAATCCTTCCTCCAAGAATTGATATCGTTGGGCAGAAATTGTATAATTAT
ATCgaataccgtgaagtcgggtaacttgcatcagtggagggaaacttgaa
tacccctcaaatgaatgacccgtctggtcattaaaatacaaagttaaatc
aaaacaaaatggtagagttAGAGCttcgagcggagctgcgtagctcattt
gttttgatattttgctgctttgtgattggtcagtcatttgatggctgtgc
aagtttccctacactgatgcaagttacccgaatTCACGGTAATAATTTAG
AATGTCATGGATTGTATGGAATACTAATAAATAAAAACGTTTTTGTTTAT
CATCAGGTTGTGGGATGCACATTGAGGAGGCATTAAAAGATGTTCCCGAA
GATGAAAGATgccaatgtccacgatcaaggtACTTAGTCCATCATATTTC
GATCGAAATTGATGGTATATTTATTGACCCTCTCTGGGGAAAGAAATGTT
ATTTTTAATAACAACTGGCAATGAGCTGCCATTTGTTTTTCAATACCTTC
TTTTTGTAACAAACCCTGTCGCCTCTGTTCATCCTTATTCGAATAAATAA
AGTAAATTCTCGTTGGCACTCCCTCTATTTTTACCTTGATATCTTTCTAc
attaaaaggaagaaattttgatgggaatttaatttggcggattgccgaaa
aagtttttcagagggaattttaatttggcggttaagGTGGTTCCAGGGGA
ATTATGAGGcatttttcatgtttccaaaAAACTGATATATCCCTGTCTCA
GATATCAAGGAGTCCGAAATGAGGAATTTCCCTCTCAACACATATCTCCA
AACCACAAGAAGTTATCTAGCACTCTGGGGTTTGGACAGACTCGATGATT
CGAGGCGAAAgccctttgaaagactttgaatagcTGCAAGAGATCACTGA
AGGGTTGAAAATTGTTGGTTGAATGTATTTAATCAGCCATCACTTTCTTG
TGTGGATCAATTTCGCTTTGTTTCTAACTTCGATGGAGTTAATTCTAGAA
ATTCGTCCTGCGTTTTACAGCCAGAAAAGTGCAATTTAGCTCAATTTTGT
TGCCTTTTTTTCACTTAAGTGTTCCCATTTCACATGAAATAGTCTTTTGA
ATACGTCTTCTTTCGACAACAATCAAAATTGGGACAGCAAACCAATGGTA
TAGGGTCAAGAGAGACTTTAAAGTTGCCATGGGTAGGCAGTAATCTTTAT
TACTTTAAAAGGGGCTTCGGGTCGTGAAGGTTGGATTATACCTCATTGGC
AtaccaaaaccatcaaaaattgtcaaatatAGCTCTGAAACTGTAAGCTG
ATAAGTTGTACTTCACAAAATGGCCTTTTTCGGCCTATTGAAAGAGATAA
AAAAAGCTCACCTGGACCGTCTTTGCTTGGCAGCATGACGTTGAACGACA
TAAAAAGGTGATTTTCTAGGAAACTTCAAAATGGTCAATTGCACAACTCT
TAACGAGGATTGTGAACTATAGCAAAGGATTTGAGCcgtcaaattttcca
aagagTTTATTTTGTTGTATGAGCATGTGGTGAATGGATCAGATTTTCGA
AAGACTTGTTATTTTGTAATTTAAAGAGCCTTTCTGTTTGACTGGAGGGG
ctgaaaatgacatttttaccTAAATTCCCAATTAAAGTCACTGAAATATA
AAATCTCCCAAAATTCTAATTCAACCACCACATGAAACTACATTTAATGA
GAGAGTTTACAAACTTTGGGCTTGAAATAAGATTTCCTGGCTTGCCAATC
CTTGTTAAGGGGGACCATGGTTTTTCGCTCATTTTTGACGGTTTTTCGGC
cggtgacgtcatcaaaatgtcggaaatgtaattttttccccaaaatacTT
TGTTTCACACAGAAACacatcactggtccaaatttNattttttcctgaaa
atactTTGTTTCACACacatcactggtccaaatttgagcaaaattggact
attttttgggaaaaaaccCTTAATTCCCCTGGTACCACCTTAACTTTGTT
GGCGGacgaaggacatttttgtccaaaaaattccattcaaaaattaaaaa
cctgttttaaagcctgaaatagcgaacatttgggggaataaatagagcaa
cttaaatttggcgggaacttaatctggcggattttgaccaaatccgccaa
attttcttcccgccaaaatttcttcttttaatgtAGACCCTCCTTCATTT
TCATTCGTCTAATACCTAGTGGAAATAGGGAAAGTTCCGaggatttttgg
acctacctccgggtaccccggtggaggtcctttaaattaacccatgtccg
ttcgttcgttcgttcgttcgttcgttcgtctgttgccagcttttctcagg
attggctcatcagttttttctgatttttggcacaatgatgcaaaatggta
atgcccaaaatgggacggagcccgattttcgaaaaaaatttatttccggc
cgaaaatgccggaaatatgccggaaataccggtttttttgcattttctca
agatttcatcattagttttttctgattttttgcacaaagatgcgtattaa
caatgcacAAAACTTGGCcgggtccgatttttgagaaaaaattttttccg
gacgaaaatgccggaaatatgccggaaaaaccggttttttggcattttct
caagatttcatcattagttttttctgattttttgcacaaagatgcgtatt
aacaatgcacAAAACTTGGCcgggtccgatttttgagaaaaaattttttc
cggtcgaaaatgccggaaatatgccggaaatcgccatttttgcaggtttt
catcggactttttccttatatttcgttgttttttcacacaaaaacatcat
taatagcaatgcccaccatgaagcatggtttaatcgtcaatagaactgag
ctttgaagccggaactttctaaaaatcgccggtgcagcccattttcgccg
gaaaaacggtatttcttgattttctcgagctgtactttatatttttttat
gNtttcgccggaaaaacggtatttcttgattttctcgagctgtacttgat
atttttttatgaaattttgcacactgatgcaaaatgataatacctaaaat
gtgacggagcccgattttggaaaaataacttttccggccgaaaatgccgg
aaatatgccggaaaaacaggtttttggcattttctcgagattttatcatt
agttttttctgattttttgctcaaagatgcgtattaacaatgcccaaaac
atggccgagtccgattattgagaaaaatttttttccggccgaaaataccg
gaaatatgccggaaaaactgtttatttggcattttcttgagattttatca
ttagttttttctgattttttgctcaaagatgcctattaacaatgcccaaa
acatggccgagtccgatttttgagaaaaaatttttcccggccgaaaatac
cggaaatatgccggaaaaactgtttatttggcattttcttgagattttat
cattagttttttctgattttttgctcaaagatgcctaATAACAATGCCcg
aaacatggccgagtccgatttttgataaaaaaaattttccggccgaaaat
gccgaaaatatgccgaaaatcgccgtttttgcagatttgaattgggcttt
ttccatacatttctttgttttttcactttaaaaaattattgataacaatg
ccaccatcaagtatgattcaattgtcaataaaacttttgcaattttgcaa
ccggaactttctatttcttttttccctaaacccctcccccccatcaacaa
tcaatgatgacatttaatgcattttcgctaagcgctatattttcttaatg
attttttttctccttattgctatctaagtttcatcatcaggtaggtccat
tcagcatgttgcttgttcttATTAAAGAAAATCCACAGGCAATAAATCCC
CCGGAAACAATATTCTCTGTCATCTTTTCTTGGTCGAAAAGACCgaactt
ttttataaaacgtGGATGataaatgggctcttccagaaaatgtccgtaca
tggggggatgtaggatatattgtccgggaggtaaatttgctctgtccggg
ggtcaattgatgcttgtccggggggggggggtaaatcgCTGAAAATTgtt
atcctccacccccatattcaaatttgttcTGGGAAAGCCCAATATCAAGA
AAAtactaaattttgaaattgggTTCAATTTAATCATAGATTTCTTTAAT
TAGCATTAACATCAAAAATGCAGATTACGACATTATTGActtgatttcat
ttttcagcTGCGTTCTTCTATGAGGGAGACTTGCAACGATCAATGGAAAT
ACACATGTAGACATTAACTCTATCGCTTTTATTACTCATTTATTAATTAC
TACAACGTCTCATAACCTTGGTGGAAATTTTTCCCACTGTTGGGATAACA
ACTTCTGTcgaaatcctaatggggatgGAAATTGCAAGCTCAAAAGGTTg
agaaatgtttaaaattttttcattgtatttcgAGTAGGGATTAAATAAAA
ATCCTTGGTTATTTTTCCCCANTTGAGAAATgcttaaaattttttcattg
tttttcgaGTAGGGATTAAATAAAAATCTATTTCCTTGGTTATTTTTCCC
CAGCGGGAACAAAATTTCGGCCATACTTTATTTATTATTGTATTTGATTG
TAAATAGTAAAATAATCTTTCAACTTGTCACAGTTGAAAATAGTATTCTA
ATGCACCCTTCAAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028550-exon-sc0000691-1491911889:131061..131351 | TCONS_00028550-exon-sc0000691-1491911889:131061..131351 | Clytia hemisphaerica | exon |
| TCONS_00028550-exon-sc0000691-1510915933:131061..131351 | TCONS_00028550-exon-sc0000691-1510915933:131061..131351 | Clytia hemisphaerica | exon |
| TCONS_00028550-exon-sc0000691-1575043694:131061..131351 | TCONS_00028550-exon-sc0000691-1575043694:131061..131351 | Clytia hemisphaerica | exon |
| TCONS_00028550-exon-sc0000691-1491911889:132317..132389 | TCONS_00028550-exon-sc0000691-1491911889:132317..132389 | Clytia hemisphaerica | exon |
| TCONS_00028550-exon-sc0000691-1510915933:132317..132389 | TCONS_00028550-exon-sc0000691-1510915933:132317..132389 | Clytia hemisphaerica | exon |
| TCONS_00028550-exon-sc0000691-1575043694:132317..132389 | TCONS_00028550-exon-sc0000691-1575043694:132317..132389 | Clytia hemisphaerica | exon |
| TCONS_00028550-exon-sc0000691-1491911889:136318..136778 | TCONS_00028550-exon-sc0000691-1491911889:136318..136778 | Clytia hemisphaerica | exon |
| TCONS_00028550-exon-sc0000691-1510915933:136318..136778 | TCONS_00028550-exon-sc0000691-1510915933:136318..136778 | Clytia hemisphaerica | exon |
| TCONS_00028550-exon-sc0000691-1575043694:136318..136778 | TCONS_00028550-exon-sc0000691-1575043694:136318..136778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000691 | supercontig | sc0000691:131061..136778 + |
Blast
The following BLAST results are available for this feature:
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