TCONS_00028545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028545
Unique NameTCONS_00028545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028545 ID=TCONS_00028545|Name=TCONS_00028545|organism=Clytia hemisphaerica|type=transcript|length=816bp
TTAGGATTTATATTCCCGGTTACGTTATATTCTTTTCGGATAACCCATTA
TAAGTATACTGTGTTCGGATATCATTTTATACTCTATGGGTGTCGCTACA
CTCACGCCCGTTCAGAGAAAAAACATCCGCCCTTGCTGGGTTCCAGctcc
ttttttgattttatcaaacgcacaaaaacaacaaaacagtCTTCTTGAAT
TTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAGCTTAAGATTTGAA
GTAACACGAAGGACTTTATTGTCAAGAATAACAGAATTAACTCCAAGCTA
AcacTAAAGTGATGTTGCGTGTACATGGACATTgtttaaatttcaaggaa
attaACCCTAAACTAAgAGTTACAAATCCTTTTGTTTGCACAAGTGAAAC
CAACTGGTTAGCCGAGCTATAACTTGGAACCTTGACGTAAAGAAATTATC
AAACGGCTGAACAAGACAACATTTTGGCTGGTGATGAATAAAGATTCAGA
CGCCAGCGACTTTAATATAAGCATAATGATCAAATGATTGATAAATATAT
ACTGTATTGTGTCACAGACCCGTTGGTACTTCTACATACTGTAAAAATCA
GACAAATTGTACCCGGTTAGAGAACCCACCCGGTGATCTATAATGAAGGT
TTTTTTAGCCTTGGGATGttgttaactttttttcttttaaaatcctaaga
atatttttaatttcatcttTTAACGGGTATTTTATCCATTTTCAGAGAAA
TTGGGTCTAAAatgttctttcattttaacaaACTATAACTATATAgctat
aactctctaacttcag
Run BLAST on NCBI

transcript from alignment at sc0000691:62850..66310+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028545 ID=TCONS_00028545|Name=TCONS_00028545|organism=Clytia hemisphaerica|type=transcript|length=3461bp|location=Sequence derived from alignment at sc0000691:62850..66310+ (Clytia hemisphaerica)
TTAGGATTTATATTCCCGGTTACGTTATATTCTTTTCGGATAACCCATTA
TAAGTATACTGTGTTCGGATATCATTTTATACTCTATGGGTGTCGCTACA
CTCACGCCCGTTCAGAGAAAAAACATCCGCCCTTGCTGGGTTCCAGctcc
ttttttgattttatcaaacgcacaaaaacaacaaaacagtCTTCTTGAAT
TTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAGCTTAAGATTTGAA
GTAACACGAAGGACTTTATTGTCAAGAATAACAGAATTAACTCCAAGCTA
AGTATATTTTATTATTCTAaaacttactctcgggtacctaatagccgtcc
ccccccgctaattaatttttcgaaaattttccacccaggacattcttatt
ccaaccccccgcNATagtaaaaatcttttgatgtaTGTAAATCTTTAAAC
AAATATTTCCAGTTATGGTAAatgcaaaaactaaatttgagtAGATTTTT
TGATGGATCATTATTTCTCCCTTAGATCTTTTTGAAACACTGTAATATCT
GGTATATGTGTAGTCATCAAGCATGCCAAACACATATCAGCATTAGCCAT
TCAATAGAGTGTCAAAATGTGGATATTACTTTGTTTTAAAACTAAGGGAC
TAGCTATGATTGTAATCTTTGGAACaatacaaaatctttgaagtTCTTTT
GAATCAGATGTGCATGTTGTTAGTCATTTTAATGCCAAAACAACATCAAC
AGTCAAAACATTCTAAACCATGTTTAAACTGTAGAAATTATGATTCAATT
ggactttttttgttttcttttttgtaattACTTTCAAAgcttaattttct
taaaaatattggaAAGCATAATGCTAAAAAGCTGTTTCAAAAAAACCTTG
TGTACTATAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
TGCTAAAAAGCAGTTTCAAAAAAACCTTGTGTACTATAACTTCTGAAtaa
catttttgtaaacaaaataatttcgtTTGAGATAGATTATTCTGCAAAGT
TTTTTTGTGCATGAAAGTTATTTGACAAGGTGTTGAGATTTTCTCTATTA
GGcaagttaaattttttagataaaTCTTTAATTATAAGTGCAAGTTTATG
CTAATCGGTAACCAGTCAGTTAGCCATGGCCAGATATATTTTGGATTGTA
TTTCCATTATCCTGTTTAGCCTGAATGTCTTGGTTGTAAACTGTTTTTGA
TCTTTCTTCTATTAACTCTGCCTAAATCCTTGTTGTAAGGCCATGACCAA
AAAATCTGTAGCTTCACCCAACAATTGAATTAGCACTTTTTGTTATTTAA
TGCTAATAATTATAaagtatttatatttattttttattttagcacTAAAG
TGATGTTGCGTGTACATGGACATTgtttaaatttcaaggaaattaACCCT
AAACTAAGTAAGTCATTATTATGTCGCAACATGGTCTTACTCAGTATTTT
gactctcaaaattttattttacttccTCTCCAATGAAGAAAGTGTTCAGT
AAAAGACTActttaaaacaatagaaattctttCCCCGTTGGTTTTTTGAT
GGAAATGTTCATCCCCACTGTGAGAAGAAGTTCCACCGGCGCTGcaagac
aggggtgttattaataaaaacaaagcttgAGTTAAAAGAAGAGTTCAAGA
GTTAAAATACCTGGACTTTttcatcagtgaaatatttttccctaaaatgt
ctatcaaaaaaaaattttgaatcaccTCTAGATATGATTCTCAATAAGTT
CGCTCAGTCTGTAAATGTAACTTTTCAAATTGGTGGCCCCTCCCAAatgt
tttcatcaaaagtttcaaaagacacccctgtctcactgcctCTTTGGAAC
TTTTGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNaatcccaatgggaatagaaattatattgttccaaggttaaa
agatccagtggggatggtttttgaatgcaacttttaaacattgaatttag
aatggggatgaaatgaaagtcaatttttataGTGGACTGGAATCTCAGGG
TAATTTTCCATCGGGGACGAAGAGAATTTGACCTATTATTAGAACACATA
CCGTCTGGTCCCTCAAGTGTAAGGTTTTACTTATGATGTAAAGTACGATT
TAGCTGGTGAAGAACTTGTGATGTCACTTAAACTataagattttgttttt
gttcctttttaggAGTTACAAATCCTTTTGTTTGCACAAGTGAAACCAAC
TGGTTAGCCGAGGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgtttcacttttca
aagatatttaacCATATGAACACTTGAGCTGATTTGTAACTCTcaaatag
cgctccgcaacgcatacgtcataattattacttttaaatgttttacattt
gtacgagttgcaatgcTGCTCAATTAAAGATGCATGCAAGTTCTTacata
tcttttgtcaaatgatgcaattaatGTGCAAAGAAACGCAAAAGGATTGT
agctcgtacaaacacatcaagAAGAGTAATTATTATGTCAAAAGTGTGCG
CTATGTAAACCTTAAAAGATGCTTACCCTATTTCCCCGCCTATTTCCCAT
TCAAGCTaccaaattgacaaaattttggaactccttctgaaaattttatt
ttgtctttcagCTATAACTTGGAACCTTGACGTAAAGAAATTATCAAACG
GCTGAACAAGACAACATTTTGGCTGGTGATGAATAAAGATTCAGACGCCA
GCGACTTTAATATAAGCATAATGATCAAATGATTGATAAATATATACTGT
ATTGTGTCACAGACCCGTTGGTACTTCTACATACTGTAAAAATCAGACAA
ATTGTACCCGGTTAGAGAACCCACCCGGTGATCTATAATGAAGGTTTTTT
TAGCCTTGGGATGttgttaactttttttcttttaaaatcctaagaatatt
tttaatttcatcttTTAACGGGTATTTTATCCATTTTCAGAGAAATTGGG
TCTAAAatgttctttcattttaacaaACTATAACTATATAgctataactc
tctaacttcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016182XLOC_016182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028545-exon-sc0000691-1491911889:62850..63150TCONS_00028545-exon-sc0000691-1491911889:62850..63150Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1510915933:62850..63150TCONS_00028545-exon-sc0000691-1510915933:62850..63150Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1575043694:62850..63150TCONS_00028545-exon-sc0000691-1575043694:62850..63150Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1491911889:64292..64356TCONS_00028545-exon-sc0000691-1491911889:64292..64356Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1510915933:64292..64356TCONS_00028545-exon-sc0000691-1510915933:64292..64356Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1575043694:64292..64356TCONS_00028545-exon-sc0000691-1575043694:64292..64356Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1491911889:65262..65311TCONS_00028545-exon-sc0000691-1491911889:65262..65311Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1510915933:65262..65311TCONS_00028545-exon-sc0000691-1510915933:65262..65311Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1575043694:65262..65311TCONS_00028545-exon-sc0000691-1575043694:65262..65311Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1491911889:65911..66310TCONS_00028545-exon-sc0000691-1491911889:65911..66310Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1510915933:65911..66310TCONS_00028545-exon-sc0000691-1510915933:65911..66310Clytia hemisphaericaexon
TCONS_00028545-exon-sc0000691-1575043694:65911..66310TCONS_00028545-exon-sc0000691-1575043694:65911..66310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:62850..66310 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.835751	0.329949	0.683042	0.241706	1.02755	0.746186	0.868552	0.561863	0.341491	0.218012	0.409244	1.21646	0.135018	0.129042	1.0212	0.981429	1.17612	1.15823	1.57262	0.732193	1.13696	1.80026	0.761499	0.370399	1.00239	1.11826	1.69171	0	0.295875	0.331175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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