|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028534 ID=TCONS_00028534|Name=TCONS_00028534|organism=Clytia hemisphaerica|type=transcript|length=3111bp
gcgagcatagtctactctgacgtaattgtaaaatttatgtgatgggagtt
tgagatagtaatgtaatgttgtttggggaattttattgcataaattattc
CCTTAATGTCCGACTATAAAGCGAGATAGAACGCGCAGCTAACTTCAGTT
CAAAACGCGAAAGCAACAGGGCGGCATTAGCtgcgagaaaatcaaaacaa
tttcttttaGAAGTAACTCTCGTCGTGGAAGGATCAAAAACAAGACACTG
CAAGTACAAAAGATAAGTTTactaattattttttcttctattttagCCTA
ACTAATAAAACATGGAGGATAACTCAGTTCCTGATAATGCAACTCTTTTA
CAAATGTTTGAAACCATGAAGTCTGAAATGTCGAAACTCAAACAAAACAA
CTCTCAACAAAGAATTAACCTCTCTCCCCCAGCAAGTGATAATGATCTTG
AAGATTTTGATTATGATTATGATGATGTAGAATTATACGCATCACAAGAT
GAAATTGATTTAATAGACCCAGTTGAGGAAAATGGGGGAGAGGAAGAAGA
AGTAGAATATGAATCTACTGAACAACCTTCTTCTTTAACTGTTGCTACTG
CCACAGATGCAGCTACTGCAAGTACCAGCCCCAAAAATAAAAATGATGAA
ATTGGAGAGGATATATTTTCAGAAATTAAAGTAACTAATTCGAGTGATTC
TCAAGGAGAAAAAATTTCCGAAAGTTGGGCCAAAATTATTGATGATAGCT
TTCATGGGCGAAAAGATAAAGATGATATTAAAAAACTAAGAGAAATGTTT
CCAACACCTAAGAATTGTACGTTACCTACCCCAAAATTAAATATTGAAAT
TTGGCAACTTCTTAATGCTTTTCAAAAAAGATCTGATGTTTCATTGAAAA
TGATCCAAAGAAATATCATTGCCGGAACAAGCGGTATTATCGAGCTCGTC
CAGGATGTCTTGAACAACAAAGCAGACAAAAAACAACTAGTACAAAAATC
AACAGACATAATCGGTTTGCTAGGACATGCCTCAAATGAAATATCTTTGA
AACGTAAACAATATATTAAAACTGCCTTGAAAGATGAATATAAAGATTTG
GTTTCCATTACAAACCAAGAAGACTCCAAATCAAAATCATCTGAAAAACT
TTTTGGAGAAAACCTAAGTGAATGTATAAAAGATCTTAAGCTGAGGAATA
AACTTAAAGGCCCCACTACCTCAACACGTGGAAAACACCGAGGTGGTTAC
AGTGGTAGATTCCAACCTTATAACAAGGACAATTCGTCTTTTTTAGGGTA
CGGCCGGAGGGGGATGTCCTCCTCCACCCAATCAAGCCAACCCAAACAAA
GATTTTACAAAAAGAAAGGAAACTGAATGCCTCAGATGCATCAACAGAGC
AACAGAACAACACACCCTCAGAGCTTGGTGGGAAGAGTCCTACAAAAAGT
CAAAACAGATCGAGTCGAGAGATGCATGATAGTCGTCCCAAACTGGCCCA
GCCAGCCTTGGTACACAAAATTAACAAAGATGATGGTCTCAGAACCAAAA
ATCATAAAACCAGGTCAGAAAGTCTTAGTTTTACCGGAGGACCCGACTGC
AATTCACAACATCTGGAAAAGAGTGGAAATTATGATCTGCCTTGTGTCAG
GGAGGAATATTTAAAACAAGGGTTTTCTGAGGATGCTATTGATATTTTAA
TGAAAAGTTGGCGCTCGGGAACTGTAAAACAGTACCAACCAGTAATAAAA
AATTGGATTAAGTTTTGTGGGAATGACATAGATCCTTTTCAACCACCCAT
AACAAAGTGTCTTGATTTCCTCTCATCTCTTTTCAAGAATGGGTCAAGTT
ATAACCAGATAGCAAATGCAAGAAGTGCTTTATCGTCAATTGTATCACCA
ATGCATGAAATAACCTTTGGTAGATTACCAGTTGTAAAAAGGTTTATGAA
AGGCATTTTTGAAAGTAGACCTGTATTACCTAGAAATAACATTATCTGGG
ATGTAAATATTTTATTTGATTATCTTAGAACTCTACCAGATTTAGAAGCT
CTGTCCTTAAAACAGCTAACTCAGAAATTAGCAATTTTACTGGCAATTGC
CTCAGGCGGCCAAAGACTTCAAACTGTCCATGCTATTCTTTTAAAAGATA
TCATTTTTCAAGAAAATAAGATTATAATACCTATTACATCTGTTCTAAAA
CAAACGAGACCCTCAAAACACATTGAGCCTCTGACTATCAGAAAATTTGG
GGACAAAAAGCTATGTATACACTCTATTCTTATTTACTATATTGAATTTA
CAAAACCATTAAGAAAGGCAGAACAATTATCTATAAGTTATAGAAAGCCA
CACAAATGTGTCACAAAAGATACTGTGGCAAGGTGGTGTAAACATATATT
AAGAAACTCTGGCATCGATACCTCTATTTTTTCAGCACACTCGACCAGAT
CCGCAACGACATCTAAAGCGAAGTTACGTAAAGTCCCAATGGAACACATC
GTCAGAAATGCTGGATGGGCAAACGCTCGTACTTTTGCAAATCATTATGA
CAAAACTGTCATTGAAGACATCAATCTCTTAGAAGCTTTAACAAATTGAA
TTAtattaaaaactttttgttgCTATATATATTAAAATTATTTGACTCAA
ATTGTTGTACTCAGATTACACAATAGTCATTCtcttaaagaaaagaaaag
ttgaATTTATATCGAAAAGAATCGATAATACTGTCTAAAATTCTTTACTC
TGAATTCCGAAAAACTTAGGCACACTACGAAATCTCGCTTTATAGTCGGA
CATTAAGGgaataatttatgcaataaaatTATCCCAAAACAAACGATACT
TACCTGTAAGTTGAAGTTTGTTGGGAGTTTTATTAATAAATTATTCCCAG
ATGGATGAGTATAAAGTGCCCACCACTAACAACCCACCCATTTTATACTC
ATCCATCAAATGTACCAAACTTTTTCGGCTATGCTACGAACCCTGAAGTT
AGCTGCGCGTTCTATCTCACTTTATACTCATCCATCTGGGAATAATTTAT
TAATAAAACTCCCAACAAACTTCAACTTACAGGTAAGTATCGTTTGTTTT
GGGATAAATTT Run BLAST on NCBI transcript from alignment at sc0000690:824..5619- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028534 ID=TCONS_00028534|Name=TCONS_00028534|organism=Clytia hemisphaerica|type=transcript|length=4796bp|location=Sequence derived from alignment at sc0000690:824..5619- (Clytia hemisphaerica)
GCGAGCATAGTCTACTCTGACGTAATTGTAAAATTTATGTGATGGGAGTT
TGAGATAGTAATGTAATGTTGTTTGGGGAATTTTATTGCATAAATTATTC
CCTTAATGTCCGACTATAAAGCGAGATAGAACGCGCAGCTAACTTCAGTT
CAAAACGCGAAAGCAACAGGGCGGCATTAGCTGCGAGAAAATCAAAACAA
TTTCTTTTAGAAGTAACTCTCGTCGTGGAAGGATCAAAAACAAGACACTG
CAAGTACAAAAGATAAGTTTACTAATTATTTTTTCTTCTATTTTAGCCTA
ACTAATAAAACATGGAGGATAACTCAGTTCCTGATAATGCAACTCTTTTA
CAAATGTTTGAAACCATGAAGTCTGAAATGTCGAAACTCAAACAAAACAA
CTCTCAACAAAGAATTAACCTCTCTCCCCCAGCAAGTGATAATGATCTTG
AAGATTTTGATTATGATTATGATGATGTAGAATTATACGCATCACAAGAT
GAAATTGATTTAATAGACCCAGTTGAGGAAAATGGGGGAGAGGAAGAAGA
AGTAGAATATGAATCTACTGAACAACCTTCTTCTTTAACTGTTGCTACTG
CCACAGATGCAGCTACTGCAAGTACCAGCCCCAAAAATAAAAATGATGAA
ATTGGAGAGGATATATTTTCAGAAATTAAAGTAACTAATTCGAGTGATTC
TCAAGGAGAAAAAATTTCCGAAAGTTGGGCCAAAATTATTGATGATAGCT
TTCATGGGCGAAAAGATAAAGATGATATTAAAAAACTAAGAGAAATGTTT
CCAACACCTAAGAATTGTACGTTACCTACCCCAAAATTAAATATTGAAAT
TTGGCAACTTCTTAATGCTTTTCAAAAAAGATCTGATGTTTCATTGAAAA
TGATCCAAAGAAATATCATTGCCGGAACAAGCGGTATTATCGAGCTCGTC
CAGGATGTCTTGAACAACAAAGCAGACAAAAAACAACTAGTACAAAAATC
AACAGACATAATCGGTTTGCTAGGACATGCCTCAAATGAAATATCTTTGA
AACGTAAACAATATATTAAAACTGCCTTGAAAGATGAATATAAAGATTTG
GTTTCCATTACAAACCAAGAAGACTCCAAATCAAAATCATCTGAAAAACT
TTTTGGAGAAAACCTAAGTGAATGTATAAAAGATCTTAAGCTGAGGAATA
AACTTAAAGGCCCCACTACCTCAACACGTGGAAAACACCGAGGTGGTTAC
AGTGGTAGATTCCAACCTTATAACAAGGACAATTCGTCTTTTTTAGGGTA
CGGCCGGAGGGGGATGTCCTCCTCCACCCAATCAAGCCAACCCAAACAAA
GATTTTACAAAAAGAAAGGAAACTGAATGCCTCAGATGCATCAACAGAGC
AACAGAACAACACACCCTCAGAGGTAAGCAATTTTCTAAAACTTTGCTCT
CATAAAGTAGAAAAATTTCAAGGTGGTAGACTTTCTAATTACTCTAGCCA
GTGGAAAACACTAACTAGTGATAAAAATATTTTGGATATGGTTACTTATG
GGGACACTATAGAATTTGAGAATGAGGTTCAAAGTAAACACTTTTGTCTA
AACCAATATGATAATGAAGATGAGAGCTTAGTCCTCTCTGAAGTGCAAAA
AATGCAAAAAAGGGGAATTATCAAGGAAACTTCTCATGAAGAGATAGAAT
ATGTATCTCCCATATTCTGTACCCCAAAAACTGATGGTGGGATAAGATTG
ATATTGAATTTGAAAAAATTAAACCAACATATAAAATTTCGTCACTTCAA
AATGCAAACCATCAGGGATGCTTTACTAATGATAAATGAAAATGATTTTC
TGACATCCATAGATCTTAAAGATGCATACTATAGTGTTCCTATTCATAAA
GATTTCCAAAGTTATCTCAAATTTCAATTTAGAGGAAAATTGTTTAAATA
CACCTGTTATCCTAATGGCTTAGGTCCTTGTCCTAGAAAATTTACCAAAC
TAACTACTGTCCCCATGAGTGAGATAAGAAAACAGGGTCACTCTATAGGT
GGTTATATAGATGATTTCTTAATGGCTGAAGATTCATATCAGAGAGCCTT
GAGAGGAACATTAGTGGCTGCAAAACTTTTTGACTTTGCTGGGTTTGTAG
TCCACCCAATTAAATCTCAGTTATTACCATCACAAAGAATTGTTTTTTTG
GGATTCCTTATTGACACAGTGACAATGACTTTAAGGCTCACGGAAAAGCG
CTCAAAAACTTTGAAAGACCACATTAACAAACTCTTGACAATCAAAAAAC
CAACAATCAGATATGTTGCTAAGGTCATTGGTCATATTATTTCGGCACTT
CCGGCTTCAAAATTTGGTGCATTACATTACAGAAAACTTGAAAAGGACAA
AACTAATGCATTGTTTGAAAATGACCACAATTTCGACGCCCAAATGGGCC
TTAGTGAGGAAGGAAAAAGAGACCTGATCTGGTGGAGAAACTCACTTCCT
TCACTAAAAAATTGGATAAGACCTCCCAAAATAGATGAAACCATCTCAAC
TGATGCATCAAAATTTGCTTGGGGTGGAATTTTTGACCAAAATATAGGAG
GCTCATGGTCACAATCTGAGATTGAATACCACATTAATGTAAAAGAGATG
TTAGCAATACTTTTCACTTTAAAAAGTTTTGGGGAAAAATTTGAAAATAA
ACATATTACTATATTGTCAGATAATACAACTGCAATTGGGGTGATAAACA
AAATGGGCAGCAGCAAGAGTGTCTTATGTGACAATACATGTCATCAGATT
TGGGAGTTTGCACAAAAACACAACATGTGGATAACATGTTCTTACATCCC
AGGAAAAGACAACATTGATGCTGACCATGAATCAAGAAAAAATTATAAAG
GGAGTAACTGGATGTTAAACAGAAAGATATTTTACAATGTTTGTCAAGAA
CTGAATTACTACCCGGATATAGATTGCTTTGCAAATAGACTAAACCACCA
GACTCCCACTTATATATCATACAAGCCAGACCCAGGAGCAAAATTTGTTG
ACAGCTTCACATTAAACTGGTCTCATTTAAATTACCCATATGCCTTTCCC
CCTTTCAGCTTGGTGGGAAGAGTCCTACAAAAAGTCAAAACAGATCGAGT
CGAGAGATGCATGATAGTCGTCCCAAACTGGCCCAGCCAGCCTTGGTACA
CAAAATTAACAAAGATGATGGTCTCAGAACCAAAAATCATAAAACCAGGT
CAGAAAGTCTTAGTTTTACCGGAGGACCCGACTGCAATTCACAACATCTG
GAAAAGAGTGGAAATTATGATCTGCCTTGTGTCAGGGAGGAATATTTAAA
ACAAGGGTTTTCTGAGGATGCTATTGATATTTTAATGAAAAGTTGGCGCT
CGGGAACTGTAAAACAGTACCAACCAGTAATAAAAAATTGGATTAAGTTT
TGTGGGAATGACATAGATCCTTTTCAACCACCCATAACAAAGTGTCTTGA
TTTCCTCTCATCTCTTTTCAAGAATGGGTCAAGTTATAACCAGATAGCAA
ATGCAAGAAGTGCTTTATCGTCAATTGTATCACCAATGCATGAAATAACC
TTTGGTAGATTACCAGTTGTAAAAAGGTTTATGAAAGGCATTTTTGAAAG
TAGACCTGTATTACCTAGAAATAACATTATCTGGGATGTAAATATTTTAT
TTGATTATCTTAGAACTCTACCAGATTTAGAAGCTCTGTCCTTAAAACAG
CTAACTCAGAAATTAGCAATTTTACTGGCAATTGCCTCAGGCGGCCAAAG
ACTTCAAACTGTCCATGCTATTCTTTTAAAAGATATCATTTTTCAAGAAA
ATAAGATTATAATACCTATTACATCTGTTCTAAAACAAACGAGACCCTCA
AAACACATTGAGCCTCTGACTATCAGAAAATTTGGGGACAAAAAGCTATG
TATACACTCTATTCTTATTTACTATATTGAATTTACAAAACCATTAAGAA
AGGCAGAACAATTATCTATAAGTTATAGAAAGCCACACAAATGTGTCACA
AAAGATACTGTGGCAAGGTGGTGTAAACATATATTAAGAAACTCTGGCAT
CGATACCTCTATTTTTTCAGCACACTCGACCAGATCCGCAACGACATCTA
AAGCGAAGTTACGTAAAGTCCCAATGGAACACATCGTCAGAAATGCTGGA
TGGGCAAACGCTCGTACTTTTGCAAATCATTATGACAAAACTGTCATTGA
AGACATCAATCTCTTAGAAGCTTTAACAAATTGAATTATATTAAAAACTT
TTTGTTGCTATATATATTAAAATTATTTGACTCAAATTGTTGTACTCAGA
TTACACAATAGTCATTCTCTTAAAGAAAAGAAAAGTTGAATTTATATCGA
AAAGAATCGATAATACTGTCTAAAATTCTTTACTCTGAATTCCGAAAAAC
TTAGGCACACTACGAAATCTCGCTTTATAGTCGGACATTAAGGGAATAAT
TTATGCAATAAAATTATCCCAAAACAAACGATACTTACCTGTAAGTTGAA
GTTTGTTGGGAGTTTTATTAATAAATTATTCCCAGATGGATGAGTATAAA
GTGCCCACCACTAACAACCCACCCATTTTATACTCATCCATCAAATGTAC
CAAACTTTTTCGGCTATGCTACGAACCCTGAAGTTAGCTGCGCGTTCTAT
CTCACTTTATACTCATCCATCTGGGAATAATTTATTAATAAAACTCCCAA
CAAACTTCAACTTACAGGTAAGTATCGTTTGTTTTGGGATAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028534-exon-sc0000690-1575043694:4197..5619 | TCONS_00028534-exon-sc0000690-1575043694:4197..5619 | Clytia hemisphaerica | exon |
| TCONS_00028534-exon-sc0000690-1575043694:824..2511 | TCONS_00028534-exon-sc0000690-1575043694:824..2511 | Clytia hemisphaerica | exon |
| TCONS_00028534-exon-sc0000690-1510915933:4197..5619 | TCONS_00028534-exon-sc0000690-1510915933:4197..5619 | Clytia hemisphaerica | exon |
| TCONS_00028534-exon-sc0000690-1510915933:824..2511 | TCONS_00028534-exon-sc0000690-1510915933:824..2511 | Clytia hemisphaerica | exon |
| TCONS_00028534-exon-sc0000690-1491911889:4197..5619 | TCONS_00028534-exon-sc0000690-1491911889:4197..5619 | Clytia hemisphaerica | exon |
| TCONS_00028534-exon-sc0000690-1491911889:824..2511 | TCONS_00028534-exon-sc0000690-1491911889:824..2511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000690 | supercontig | sc0000690:824..5619 - |
Blast
The following BLAST results are available for this feature:
|
