TCONS_00028533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028533
Unique NameTCONS_00028533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028533 ID=TCONS_00028533|Name=TCONS_00028533|organism=Clytia hemisphaerica|type=transcript|length=979bp
gaattttattgcataaattattcCCTTAATGTCCGACTATAAAGCGAGAT
AGAACGCGCAGCTAACTTCAGTTCAAAACGCGAAAGCAACAGGGCGGCAT
TAGCtgcgagaaaatcaaaacaatttcttttaGAAGTAACTCTCGTCGTG
GAAGGATCAAAAACAAGACACTGCAAGGTACGGCCGGAGGGGGATGTCCT
CCTCCACCCAATCAAGCCAACCCAAACAAAGATTTTACAAAAAGAAAGGA
AACTGAATGCCTCAGATGCATCAACAGAGCAACAGAACAACACACCCTCA
GAGCACACTCGACCAGATCCGCAACGACATCTAAAGCGAAGTTACGTAAA
GTCCCAATGGAACACATCGTCAGAAATGCTGGATGGGCAAACGCTCGTAC
TTTTGCAAATCATTATGACAAAACTGTCATTGAAGACATCAATCTCTTAG
AAGCTTTAACAAATTGAATTAtattaaaaactttttgttgCTATATATAT
TAAAATTATTTGACTCAAATTGTTGTACTCAGATTACACAATAGTCATTC
tcttaaagaaaagaaaagttgaATTTATATCGAAAAGAATCGATAATACT
GTCTAAAATTCTTTACTCTGAATTCCGAAAAACTTAGGCACACTACGAAA
TCTCGCTTTATAGTCGGACATTAAGGgaataatttatgcaataaaatTAT
CCCAAAACAAACGATACTTACCTGTAAGTTGAAGTTTGTTGGGAGTTTTA
TTAATAAATTATTCCCAGATGGATGAGTATAAAGTGCCCACCACTAACAA
CCCACCCATTTTATACTCATCCATCAAATGTACCAAACTTTTTCGGCTAT
GCTACGAACCCTGAAGTTAGCTGCGCGTTCTATCTCACTTTATACTCATC
CATCTGGGAATAATTTATTAATAAAACTCCCAACAAACTTCAACTTACAG
GTAAGTATCGTTTGTTTTGGGATAAATTT
Run BLAST on NCBI

transcript from alignment at sc0000690:824..5542-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028533 ID=TCONS_00028533|Name=TCONS_00028533|organism=Clytia hemisphaerica|type=transcript|length=4719bp|location=Sequence derived from alignment at sc0000690:824..5542- (Clytia hemisphaerica)
GAATTTTATTGCATAAATTATTCCCTTAATGTCCGACTATAAAGCGAGAT
AGAACGCGCAGCTAACTTCAGTTCAAAACGCGAAAGCAACAGGGCGGCAT
TAGCTGCGAGAAAATCAAAACAATTTCTTTTAGAAGTAACTCTCGTCGTG
GAAGGATCAAAAACAAGACACTGCAAGTACAAAAGATAAGTTTACTAATT
ATTTTTTCTTCTATTTTAGCCTAACTAATAAAACATGGAGGATAACTCAG
TTCCTGATAATGCAACTCTTTTACAAATGTTTGAAACCATGAAGTCTGAA
ATGTCGAAACTCAAACAAAACAACTCTCAACAAAGAATTAACCTCTCTCC
CCCAGCAAGTGATAATGATCTTGAAGATTTTGATTATGATTATGATGATG
TAGAATTATACGCATCACAAGATGAAATTGATTTAATAGACCCAGTTGAG
GAAAATGGGGGAGAGGAAGAAGAAGTAGAATATGAATCTACTGAACAACC
TTCTTCTTTAACTGTTGCTACTGCCACAGATGCAGCTACTGCAAGTACCA
GCCCCAAAAATAAAAATGATGAAATTGGAGAGGATATATTTTCAGAAATT
AAAGTAACTAATTCGAGTGATTCTCAAGGAGAAAAAATTTCCGAAAGTTG
GGCCAAAATTATTGATGATAGCTTTCATGGGCGAAAAGATAAAGATGATA
TTAAAAAACTAAGAGAAATGTTTCCAACACCTAAGAATTGTACGTTACCT
ACCCCAAAATTAAATATTGAAATTTGGCAACTTCTTAATGCTTTTCAAAA
AAGATCTGATGTTTCATTGAAAATGATCCAAAGAAATATCATTGCCGGAA
CAAGCGGTATTATCGAGCTCGTCCAGGATGTCTTGAACAACAAAGCAGAC
AAAAAACAACTAGTACAAAAATCAACAGACATAATCGGTTTGCTAGGACA
TGCCTCAAATGAAATATCTTTGAAACGTAAACAATATATTAAAACTGCCT
TGAAAGATGAATATAAAGATTTGGTTTCCATTACAAACCAAGAAGACTCC
AAATCAAAATCATCTGAAAAACTTTTTGGAGAAAACCTAAGTGAATGTAT
AAAAGATCTTAAGCTGAGGAATAAACTTAAAGGCCCCACTACCTCAACAC
GTGGAAAACACCGAGGTGGTTACAGTGGTAGATTCCAACCTTATAACAAG
GACAATTCGTCTTTTTTAGGGTACGGCCGGAGGGGGATGTCCTCCTCCAC
CCAATCAAGCCAACCCAAACAAAGATTTTACAAAAAGAAAGGAAACTGAA
TGCCTCAGATGCATCAACAGAGCAACAGAACAACACACCCTCAGAGGTAA
GCAATTTTCTAAAACTTTGCTCTCATAAAGTAGAAAAATTTCAAGGTGGT
AGACTTTCTAATTACTCTAGCCAGTGGAAAACACTAACTAGTGATAAAAA
TATTTTGGATATGGTTACTTATGGGGACACTATAGAATTTGAGAATGAGG
TTCAAAGTAAACACTTTTGTCTAAACCAATATGATAATGAAGATGAGAGC
TTAGTCCTCTCTGAAGTGCAAAAAATGCAAAAAAGGGGAATTATCAAGGA
AACTTCTCATGAAGAGATAGAATATGTATCTCCCATATTCTGTACCCCAA
AAACTGATGGTGGGATAAGATTGATATTGAATTTGAAAAAATTAAACCAA
CATATAAAATTTCGTCACTTCAAAATGCAAACCATCAGGGATGCTTTACT
AATGATAAATGAAAATGATTTTCTGACATCCATAGATCTTAAAGATGCAT
ACTATAGTGTTCCTATTCATAAAGATTTCCAAAGTTATCTCAAATTTCAA
TTTAGAGGAAAATTGTTTAAATACACCTGTTATCCTAATGGCTTAGGTCC
TTGTCCTAGAAAATTTACCAAACTAACTACTGTCCCCATGAGTGAGATAA
GAAAACAGGGTCACTCTATAGGTGGTTATATAGATGATTTCTTAATGGCT
GAAGATTCATATCAGAGAGCCTTGAGAGGAACATTAGTGGCTGCAAAACT
TTTTGACTTTGCTGGGTTTGTAGTCCACCCAATTAAATCTCAGTTATTAC
CATCACAAAGAATTGTTTTTTTGGGATTCCTTATTGACACAGTGACAATG
ACTTTAAGGCTCACGGAAAAGCGCTCAAAAACTTTGAAAGACCACATTAA
CAAACTCTTGACAATCAAAAAACCAACAATCAGATATGTTGCTAAGGTCA
TTGGTCATATTATTTCGGCACTTCCGGCTTCAAAATTTGGTGCATTACAT
TACAGAAAACTTGAAAAGGACAAAACTAATGCATTGTTTGAAAATGACCA
CAATTTCGACGCCCAAATGGGCCTTAGTGAGGAAGGAAAAAGAGACCTGA
TCTGGTGGAGAAACTCACTTCCTTCACTAAAAAATTGGATAAGACCTCCC
AAAATAGATGAAACCATCTCAACTGATGCATCAAAATTTGCTTGGGGTGG
AATTTTTGACCAAAATATAGGAGGCTCATGGTCACAATCTGAGATTGAAT
ACCACATTAATGTAAAAGAGATGTTAGCAATACTTTTCACTTTAAAAAGT
TTTGGGGAAAAATTTGAAAATAAACATATTACTATATTGTCAGATAATAC
AACTGCAATTGGGGTGATAAACAAAATGGGCAGCAGCAAGAGTGTCTTAT
GTGACAATACATGTCATCAGATTTGGGAGTTTGCACAAAAACACAACATG
TGGATAACATGTTCTTACATCCCAGGAAAAGACAACATTGATGCTGACCA
TGAATCAAGAAAAAATTATAAAGGGAGTAACTGGATGTTAAACAGAAAGA
TATTTTACAATGTTTGTCAAGAACTGAATTACTACCCGGATATAGATTGC
TTTGCAAATAGACTAAACCACCAGACTCCCACTTATATATCATACAAGCC
AGACCCAGGAGCAAAATTTGTTGACAGCTTCACATTAAACTGGTCTCATT
TAAATTACCCATATGCCTTTCCCCCTTTCAGCTTGGTGGGAAGAGTCCTA
CAAAAAGTCAAAACAGATCGAGTCGAGAGATGCATGATAGTCGTCCCAAA
CTGGCCCAGCCAGCCTTGGTACACAAAATTAACAAAGATGATGGTCTCAG
AACCAAAAATCATAAAACCAGGTCAGAAAGTCTTAGTTTTACCGGAGGAC
CCGACTGCAATTCACAACATCTGGAAAAGAGTGGAAATTATGATCTGCCT
TGTGTCAGGGAGGAATATTTAAAACAAGGGTTTTCTGAGGATGCTATTGA
TATTTTAATGAAAAGTTGGCGCTCGGGAACTGTAAAACAGTACCAACCAG
TAATAAAAAATTGGATTAAGTTTTGTGGGAATGACATAGATCCTTTTCAA
CCACCCATAACAAAGTGTCTTGATTTCCTCTCATCTCTTTTCAAGAATGG
GTCAAGTTATAACCAGATAGCAAATGCAAGAAGTGCTTTATCGTCAATTG
TATCACCAATGCATGAAATAACCTTTGGTAGATTACCAGTTGTAAAAAGG
TTTATGAAAGGCATTTTTGAAAGTAGACCTGTATTACCTAGAAATAACAT
TATCTGGGATGTAAATATTTTATTTGATTATCTTAGAACTCTACCAGATT
TAGAAGCTCTGTCCTTAAAACAGCTAACTCAGAAATTAGCAATTTTACTG
GCAATTGCCTCAGGCGGCCAAAGACTTCAAACTGTCCATGCTATTCTTTT
AAAAGATATCATTTTTCAAGAAAATAAGATTATAATACCTATTACATCTG
TTCTAAAACAAACGAGACCCTCAAAACACATTGAGCCTCTGACTATCAGA
AAATTTGGGGACAAAAAGCTATGTATACACTCTATTCTTATTTACTATAT
TGAATTTACAAAACCATTAAGAAAGGCAGAACAATTATCTATAAGTTATA
GAAAGCCACACAAATGTGTCACAAAAGATACTGTGGCAAGGTGGTGTAAA
CATATATTAAGAAACTCTGGCATCGATACCTCTATTTTTTCAGCACACTC
GACCAGATCCGCAACGACATCTAAAGCGAAGTTACGTAAAGTCCCAATGG
AACACATCGTCAGAAATGCTGGATGGGCAAACGCTCGTACTTTTGCAAAT
CATTATGACAAAACTGTCATTGAAGACATCAATCTCTTAGAAGCTTTAAC
AAATTGAATTATATTAAAAACTTTTTGTTGCTATATATATTAAAATTATT
TGACTCAAATTGTTGTACTCAGATTACACAATAGTCATTCTCTTAAAGAA
AAGAAAAGTTGAATTTATATCGAAAAGAATCGATAATACTGTCTAAAATT
CTTTACTCTGAATTCCGAAAAACTTAGGCACACTACGAAATCTCGCTTTA
TAGTCGGACATTAAGGGAATAATTTATGCAATAAAATTATCCCAAAACAA
ACGATACTTACCTGTAAGTTGAAGTTTGTTGGGAGTTTTATTAATAAATT
ATTCCCAGATGGATGAGTATAAAGTGCCCACCACTAACAACCCACCCATT
TTATACTCATCCATCAAATGTACCAAACTTTTTCGGCTATGCTACGAACC
CTGAAGTTAGCTGCGCGTTCTATCTCACTTTATACTCATCCATCTGGGAA
TAATTTATTAATAAAACTCCCAACAAACTTCAACTTACAGGTAAGTATCG
TTTGTTTTGGGATAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016173XLOC_016173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028533-exon-sc0000690-1575043694:5367..5542TCONS_00028533-exon-sc0000690-1575043694:5367..5542Clytia hemisphaericaexon
TCONS_00028533-exon-sc0000690-1575043694:4197..4323TCONS_00028533-exon-sc0000690-1575043694:4197..4323Clytia hemisphaericaexon
TCONS_00028533-exon-sc0000690-1575043694:824..1499TCONS_00028533-exon-sc0000690-1575043694:824..1499Clytia hemisphaericaexon
TCONS_00028533-exon-sc0000690-1510915933:5367..5542TCONS_00028533-exon-sc0000690-1510915933:5367..5542Clytia hemisphaericaexon
TCONS_00028533-exon-sc0000690-1510915933:4197..4323TCONS_00028533-exon-sc0000690-1510915933:4197..4323Clytia hemisphaericaexon
TCONS_00028533-exon-sc0000690-1510915933:824..1499TCONS_00028533-exon-sc0000690-1510915933:824..1499Clytia hemisphaericaexon
TCONS_00028533-exon-sc0000690-1491911889:5367..5542TCONS_00028533-exon-sc0000690-1491911889:5367..5542Clytia hemisphaericaexon
TCONS_00028533-exon-sc0000690-1491911889:4197..4323TCONS_00028533-exon-sc0000690-1491911889:4197..4323Clytia hemisphaericaexon
TCONS_00028533-exon-sc0000690-1491911889:824..1499TCONS_00028533-exon-sc0000690-1491911889:824..1499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000690supercontigsc0000690:824..5542 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.8332e-09	0	0	0	2.59408e-09	0	0	0	0	1.28245	0.975526	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top