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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028520 ID=TCONS_00028520|Name=TCONS_00028520|organism=Clytia hemisphaerica|type=transcript|length=1080bp
ATGAGTTCTAATATATCAATATGAAACTGTTATTCTTCTGTGTTCCATCT
AACTCCGTTGGATACACTATTGTGATGTATTCCCCATCCTAGGGAACTAG
CATCAGTAAAAATCGTTTTGTCAATAGGTGGGAGATTAATGTCAATAGTG
GTAGTCATAATATTGTCACTCCACCATTTAATCTCTTTAAGGCTATCCCC
AGTTAGAGATCTCATACTATTATTTGATGAAGAAGTGTCATTTTATAAGC
GATTTAAgaccaaaatgagggggaaaCCACCATTTCTTCATCAAATAACT
CCCGTTCAGTACAGAAATCAACCATACTCGCTTAAATGTCTTCTATacag
tttttcgagagctttcagattctataattggttttggcctaaaatggGTT
TNCGTTGGATACACCATTGTGATGTATTCCCCATCCTAGGGAACTAGCAT
CAGTAAAAATCGTTTTGTCAATAGGTGGGAGATTAATGTCAATAGTGGTA
GTCATAATATTGTCACTCCAACATTTAATCTCTTTAAGGCTATCCCCAGT
TAGAGATCTCATACTATTATTTGATGAAGAAGTGTCATTTTATAAGCGAT
TTAAgaccaaaatgagggggaaaCCACCATTTCTTCATCAAATAACTCCC
GTTCAGTACAGAAATCAACCATACTCGCTTAAATGTCTTCTATacagttt
ttcgagagctttcagattctataattggttttggcctaaaatgggtttga
aatttccataaaaattaaGCCCTAGGGGCCCTTCTAATATCAATCCATAG
GCTATTAGACATGTCTGGTCCAAATTTGAtgctttgttccaaatttgcac
GATAAGTACACCAATCAGGCCTACTAAACAGTATTATGTAGAGTttctga
attgaaaaaaattatactctTACAAAAGGGAGCTTTAGTCGTATTTTTTA
ggaatctttgtttgtttgttttaatgAATCTagattctttataagaaaat
aaggtCTATAAGACCTACAATCTATGACCTTTTAGCACAATACCCTAGGT
GTATtttttgtgtaacgcttcacTCAAAAT Run BLAST on NCBI protein sequence of TCONS_00028520-protein >TCONS_00028520-protein ID=TCONS_00028520-protein|Name=TCONS_00028520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MSIVVVIILSLHHLISLRLSPVRDLILLFDEEVSFYKRFKTKMRGKPPFL
HQITPVQYRNQPYSLKCLLYSFSRAFRFYNWFWPKMGXRWIHHCDVFPIL
GN Run BLAST on NCBI transcript from alignment at sc0000683:155103..156182 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028520 ID=TCONS_00028520|Name=TCONS_00028520|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at sc0000683:155103..156182 (Clytia hemisphaerica)
ATTTTGAgtgaagcgttacacaaaaaATACACCTAGGGTATTGTGCTAAA
AGGTCATAGATTGTAGGTCTTATAGaccttattttcttataaagaatctA
GATTcattaaaacaaacaaacaaagattccTAAAAAATACGACTAAAGCT
CCCTTTTGTAagagtataatttttttcaattcagaaACTCTACATAATAC
TGTTTAGTAGGCCTGATTGGTGTACTTATCgtgcaaatttggaacaaagc
aTCAAATTTGGACCAGACATGTCTAATAGCCTATGGATTGATATTAGAAG
GGCCCCTAGGGCttaatttttatggaaatttcaaacccattttaggccaa
aaccaattatagaatctgaaagctctcgaaaaactgtATAGAAGACATTT
AAGCGAGTATGGTTGATTTCTGTACTGAACGGGAGTTATTTGATGAAGAA
ATGGTGGtttccccctcattttggtcTTAAATCGCTTATAAAATGACACT
TCTTCATCAAATAATAGTATGAGATCTCTAACTGGGGATAGCCTTAAAGA
GATTAAATGTTGGAGTGACAATATTATGACTACCACTATTGACATTAATC
TCCCACCTATTGACAAAACGATTTTTACTGATGCTAGTTCCCTAGGATGG
GGAATACATCACAATGGTGTATCCAACGNAAACccattttaggccaaaac
caattatagaatctgaaagctctcgaaaaactgtATAGAAGACATTTAAG
CGAGTATGGTTGATTTCTGTACTGAACGGGAGTTATTTGATGAAGAAATG
GTGGtttccccctcattttggtcTTAAATCGCTTATAAAATGACACTTCT
TCATCAAATAATAGTATGAGATCTCTAACTGGGGATAGCCTTAAAGAGAT
TAAATGGTGGAGTGACAATATTATGACTACCACTATTGACATTAATCTCC
CACCTATTGACAAAACGATTTTTACTGATGCTAGTTCCCTAGGATGGGGA
ATACATCACAATAGTGTATCCAACGGAGTTAGATGGAACACAGAAGAATA
ACAGTTTCATATTGATATATTAGAACTCAT Coding sequence (CDS) from alignment at sc0000683:155103..156182 >TCONS_00028520 ID=TCONS_00028520|Name=TCONS_00028520|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000683:155103..156182 (Clytia hemisphaerica)
CTAGTTCCCTAGGATGGGGAATACATCACAATGGTGTATCCAACGNAAAC
ccattttaggccaaaaccaattatagaatctgaaagctctcgaaaaactg
tATAGAAGACATTTAAGCGAGTATGGTTGATTTCTGTACTGAACGGGAGT
TATTTGATGAAGAAATGGTGGtttccccctcattttggtcTTAAATCGCT
TATAAAATGACACTTCTTCATCAAATAATAGTATGAGATCTCTAACTGGG
GATAGCCTTAAAGAGATTAAATGGTGGAGTGACAATATTATGACTACCAC
TATTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028520-exon-sc0000683-1491911889:155103..156182 | TCONS_00028520-exon-sc0000683-1491911889:155103..156182 | Clytia hemisphaerica | exon |
| TCONS_00028520-exon-sc0000683-1510915933:155103..156182 | TCONS_00028520-exon-sc0000683-1510915933:155103..156182 | Clytia hemisphaerica | exon |
| TCONS_00028520-exon-sc0000683-1575043694:155103..156182 | TCONS_00028520-exon-sc0000683-1575043694:155103..156182 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000683 | supercontig | sc0000683:155103..156182 . |
Blast
The following BLAST results are available for this feature:
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