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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028516 ID=TCONS_00028516|Name=TCONS_00028516|organism=Clytia hemisphaerica|type=transcript|length=1755bp
TTGACAAAAATGGAACATTATATAATTTATCATTACCTTCATTGCAATGA
AGCCTTTTTCTGCAATTTTGGGGGCAGCAATTATTTTATCAACCATGTTT
CTAATTTGTTTCTTTTacctaaaagaagaaaacataTATACAATAAATTA
AGATTACTTTCACTTGaataacattttcataattgGGAAATTTTGGAAGG
GTATACCCTTTTATCAAATTATACACAGTTCTCCTACAATATCATCATTC
TGAACCTAAAgaatattttaggggtattaaGATTTATAGCAGGGGGTTTT
GAAGAGATGGGAATAATATTTAATTAAAAACTGTTAATTATTATGCCGTG
CATAAATCAGTATAGTTCGTTGGGATCCTGACACATCCACCTATGTGATG
TGTATGTTCCAATTAATCAACtttcatttatcaaattttgacaaGAAAAG
ATATCTGCTCGACGTCAAATTCATATTTTTAGATAGAAACAATAGTTTAA
CAAACTCTGAGATGTCAGTGTCAGATACAAGTTTTACCATTCACCATCAT
CATCTGGTAAAGGAGCTTCTTGAGCTTCCTTCATGAGTTTCTTGCAGAAG
GTGATGCGTTCTTTCGAAATGATCCAAAAGTCGTCAGCTATCGCTAGTTC
AAGGGAGGGCTTGAAGTGATTTTGCGtcttcacttttgttttcttcgTGT
TGGTTCAGCTCAATGTATTCTTCTGTGACTGAGCTCGACACGTTTTGTGA
AGCTGGACCGACCCTGGTAGACAGATCTTGCAAGGGTGGAATGGCGTTGT
GTGGAAGTAAGCCGCATTCTTTCAGCTGATTAAACTTCTTTGAAGTGACG
GTTAATTCCACGCCATTCTTATCCGTGAAGGTAATCAACTGTTGGCTTGT
AGCTTGACTTTTCGAACGTGGAGTGACCTTAGCAGGTCGATCTTGTAAGG
GTAAAATGGCGTTTTGCGGAAGTAAACCGCACTCTTTTAATTGATTAAAC
TTTTTTGAAGTAACGGTCACCTCCGCGCCATTCTTATCCGTGAAGGTAAT
CAACTGTTGGCTTGTAGCTAGACTTTTCGAAGATGGAGTGACCTTAGCAG
GTTGATCTTGTAAGGTTGGAACAGCGTTGGCTGGTAGTAAACCGCATTTT
TTCAGCTGATTAAACTTCTTTGAAGTGACGGTTAATTCCGCGCCATTCTT
ATCCGTGAAGGTAATCAACTGTTGGCTTGTAGCTAGACTTTTCGAAGATG
GAGTGACCTTAGCAGGTTGATCTTGTAAGGTTGGAACAGCGTTGGCTGGT
AGTAAACCGCATTTTTTCAGCTGATTAAACTTCTTTGAAGTGACGGTTAA
TTCCGCGCCATTCTTATCCGTGAAGGTAATCAACTGTTGGCTTGTAGCTA
GACTTTTCGAAGATGGAGTGACCTTAGCAGGTTGATCTTGTAAGGTTGGA
ACAGCGTTGGCTGGTAGTAAACCGCATTTTTTCAGCTGATTAAACTTCTG
GGCAGTGACACGGTCACCACCATGCCATTCCCGCCCGTGAAGGTGATCCA
TGAAGTTGGTTGTCCACAGCTTGCTTTCGTATTACGAAGTTGAGTTATTC
TCCCCTTGTTATTATTGTTTTGCTTCTGGCTCACGATTTCTTTGCAGGAG
TCTTTTTTAAAGGAAGAGTATTTTTACTTATTGCTTGACTTTgcaatttt
gtttgtttgttccaGATCAGCTTCGTAAACGACAACTGTTTTTTAAAGCC
ACTTC Run BLAST on NCBI protein sequence of TCONS_00028516-protein >TCONS_00028516-protein ID=TCONS_00028516-protein|Name=TCONS_00028516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MDHLHGREWHGGDRVTAQKFNQLKKCGLLPANAVPTLQDQPAKVTPSSKS
LATSQQLITFTDKNGAELTVTSKKFNQLKKCGLLPANAVPTLQDQPAKVT
PSSKSLATSQQLITFTDKNGAELTVTSKKFNQLKKCGLLPANAVPTLQDQ
PAKVTPSSKSLATSQQLITFTDKNGAEVTVTSKKFNQLKECGLLPQNAIL
PLQDRPAKVTPRSKSQATSQQLITFTDKNGVELTVTSKKFNQLKECGLLP
HNAIPPLQDLSTRVGPASQNVSSSVTEEYIELNQHEENKSEDAKSLQALP Run BLAST on NCBI transcript from alignment at sc0000683:131294..133048 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028516 ID=TCONS_00028516|Name=TCONS_00028516|organism=Clytia hemisphaerica|type=transcript|length=1755bp|location=Sequence derived from alignment at sc0000683:131294..133048 (Clytia hemisphaerica)
GAAGTGGCTTTAAAAAACAGTTGTCGTTTACGAAGCTGATCtggaacaaa
caaacaaaattgcAAAGTCAAGCAATAAGTAAAAATACTCTTCCTTTAAA
AAAGACTCCTGCAAAGAAATCGTGAGCCAGAAGCAAAACAATAATAACAA
GGGGAGAATAACTCAACTTCGTAATACGAAAGCAAGCTGTGGACAACCAA
CTTCATGGATCACCTTCACGGGCGGGAATGGCATGGTGGTGACCGTGTCA
CTGCCCAGAAGTTTAATCAGCTGAAAAAATGCGGTTTACTACCAGCCAAC
GCTGTTCCAACCTTACAAGATCAACCTGCTAAGGTCACTCCATCTTCGAA
AAGTCTAGCTACAAGCCAACAGTTGATTACCTTCACGGATAAGAATGGCG
CGGAATTAACCGTCACTTCAAAGAAGTTTAATCAGCTGAAAAAATGCGGT
TTACTACCAGCCAACGCTGTTCCAACCTTACAAGATCAACCTGCTAAGGT
CACTCCATCTTCGAAAAGTCTAGCTACAAGCCAACAGTTGATTACCTTCA
CGGATAAGAATGGCGCGGAATTAACCGTCACTTCAAAGAAGTTTAATCAG
CTGAAAAAATGCGGTTTACTACCAGCCAACGCTGTTCCAACCTTACAAGA
TCAACCTGCTAAGGTCACTCCATCTTCGAAAAGTCTAGCTACAAGCCAAC
AGTTGATTACCTTCACGGATAAGAATGGCGCGGAGGTGACCGTTACTTCA
AAAAAGTTTAATCAATTAAAAGAGTGCGGTTTACTTCCGCAAAACGCCAT
TTTACCCTTACAAGATCGACCTGCTAAGGTCACTCCACGTTCGAAAAGTC
AAGCTACAAGCCAACAGTTGATTACCTTCACGGATAAGAATGGCGTGGAA
TTAACCGTCACTTCAAAGAAGTTTAATCAGCTGAAAGAATGCGGCTTACT
TCCACACAACGCCATTCCACCCTTGCAAGATCTGTCTACCAGGGTCGGTC
CAGCTTCACAAAACGTGTCGAGCTCAGTCACAGAAGAATACATTGAGCTG
AACCAACAcgaagaaaacaaaagtgaagaCGCAAAATCACTTCAAGCCCT
CCCTTGAACTAGCGATAGCTGACGACTTTTGGATCATTTCGAAAGAACGC
ATCACCTTCTGCAAGAAACTCATGAAGGAAGCTCAAGAAGCTCCTTTACC
AGATGATGATGGTGAATGGTAAAACTTGTATCTGACACTGACATCTCAGA
GTTTGTTAAACTATTGTTTCTATCTAAAAATATGAATTTGACGTCGAGCA
GATATCTTTTCttgtcaaaatttgataaatgaaaGTTGATTAATTGGAAC
ATACACATCACATAGGTGGATGTGTCAGGATCCCAACGAACTATACTGAT
TTATGCACGGCATAATAATTAACAGTTTTTAATTAAATATTATTCCCATC
TCTTCAAAACCCCCTGCTATAAATCttaatacccctaaaatattcTTTAG
GTTCAGAATGATGATATTGTAGGAGAACTGTGTATAATTTGATAAAAGGG
TATACCCTTCCAAAATTTCCcaattatgaaaatgttattCAAGTGAAAGT
AATCTTAATTTATTGTATAtatgttttcttcttttaggtAAAAGAAACAA
ATTAGAAACATGGTTGATAAAATAATTGCTGCCCCCAAAATTGCAGAAAA
AGGCTTCATTGCAATGAAGGTAATGATAAATTATATAATGTTCCATTTTT
GTCAA Coding sequence (CDS) from alignment at sc0000683:131294..133048 >TCONS_00028516 ID=TCONS_00028516|Name=TCONS_00028516|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000683:131294..133048 (Clytia hemisphaerica)
ATGGATCACCTTCACGGGCGGGAATGGCATGGTGGTGACCGTGTCACTGC
CCAGAAGTTTAATCAGCTGAAAAAATGCGGTTTACTACCAGCCAACGCTG
TTCCAACCTTACAAGATCAACCTGCTAAGGTCACTCCATCTTCGAAAAGT
CTAGCTACAAGCCAACAGTTGATTACCTTCACGGATAAGAATGGCGCGGA
ATTAACCGTCACTTCAAAGAAGTTTAATCAGCTGAAAAAATGCGGTTTAC
TACCAGCCAACGCTGTTCCAACCTTACAAGATCAACCTGCTAAGGTCACT
CCATCTTCGAAAAGTCTAGCTACAAGCCAACAGTTGATTACCTTCACGGA
TAAGAATGGCGCGGAATTAACCGTCACTTCAAAGAAGTTTAATCAGCTGA
AAAAATGCGGTTTACTACCAGCCAACGCTGTTCCAACCTTACAAGATCAA
CCTGCTAAGGTCACTCCATCTTCGAAAAGTCTAGCTACAAGCCAACAGTT
GATTACCTTCACGGATAAGAATGGCGCGGAGGTGACCGTTACTTCAAAAA
AGTTTAATCAATTAAAAGAGTGCGGTTTACTTCCGCAAAACGCCATTTTA
CCCTTACAAGATCGACCTGCTAAGGTCACTCCACGTTCGAAAAGTCAAGC
TACAAGCCAACAGTTGATTACCTTCACGGATAAGAATGGCGTGGAATTAA
CCGTCACTTCAAAGAAGTTTAATCAGCTGAAAGAATGCGGCTTACTTCCA
CACAACGCCATTCCACCCTTGCAAGATCTGTCTACCAGGGTCGGTCCAGC
TTCACAAAACGTGTCGAGCTCAGTCACAGAAGAATACATTGAGCTGAACC
AACAcgaagaaaacaaaagtgaagaCGCAAAATCACTTCAAGCCCTCCCT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028516-exon-sc0000683-1491911889:131294..133048 | TCONS_00028516-exon-sc0000683-1491911889:131294..133048 | Clytia hemisphaerica | exon |
| TCONS_00028516-exon-sc0000683-1510915933:131294..133048 | TCONS_00028516-exon-sc0000683-1510915933:131294..133048 | Clytia hemisphaerica | exon |
| TCONS_00028516-exon-sc0000683-1575043694:131294..133048 | TCONS_00028516-exon-sc0000683-1575043694:131294..133048 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000683 | supercontig | sc0000683:131294..133048 . |
Blast
The following BLAST results are available for this feature:
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