TCONS_00028514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028514
Unique NameTCONS_00028514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028514 ID=TCONS_00028514|Name=TCONS_00028514|organism=Clytia hemisphaerica|type=transcript|length=760bp
aaaatttcttaccTTTCAACTAACATCTCTGGTGGCAAGTATGCAATTGT
TCCTCTACTAATATCGGTGACACTTGTCTTCCGTGCTGCACTAGTCATCA
ACATGGCTTTAGTGTGCAGCACTTCTGTTCGGCTTTCTCCAAAGTCAGCA
AGCTTGCAGATGATTGGGTTGTGTTGATATAGGTCCTTTTCGTTTGAAAA
GTGCTGGTTGGATACTAGTATATTTGCCGGTTTTAGGTCCCTGTGGGCGA
TACGCAGGTTATGCAGATGGCTGAGGCCACTTGCCACGTTGCGtgcaatg
aaaaatggaaaGTGCTCAATTTGGGTAAATTTTGACTTCTGGTTTACtct
tttaaaaaagtcaatGAGAGATGACACGGCGTGATTATCACCACAGAAAG
AGAAATTAAATTCAACATATTCCTGCATAATAAGGTAGTCGTCAAATGAT
GATGCACCCAAGAACTTAACAACATTACAGCAGTCTTTTGACGCAAGTTT
GTTAATGTGACACtccttcaaaaattgttcttcCGTTATATCAGCATTGA
GTTGTTTAATGACAACGTCTTTATTCTCGTACGATGCGCGCTTAACGACA
CCAAAACTTCCATTTCCTCAAAAGAAATTTGCCCTAATTTAGTCATTTTA
CTTTAGCTAATTTTAAGCAAGGACGCCATACCAGCTACGGAAAATCTTTT
CTAGTACATATTCAACACTGtatcaaatcaaaaatgttCAGCTATAATGT
CTGATACGCA
Run BLAST on NCBI

protein sequence of TCONS_00028514-protein

>TCONS_00028514-protein ID=TCONS_00028514-protein|Name=TCONS_00028514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MQEYVEFNFSFCGDNHAVSSLIDFFKRVNQKSKFTQIEHFPFFIARNVAS
GLSHLHNLRIAHRDLKPANILVSNQHFSNEKDLYQHNPIICKLADFGESR
TEVLHTKAMLMTSAARKTSVTDISRGTIAYLPPEMLVER
Run BLAST on NCBI

transcript from alignment at sc0000683:120481..121240

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028514 ID=TCONS_00028514|Name=TCONS_00028514|organism=Clytia hemisphaerica|type=transcript|length=760bp|location=Sequence derived from alignment at sc0000683:120481..121240 (Clytia hemisphaerica)
TGCGTATCAGACATTATAGCTGaacatttttgatttgataCAGTGTTGAA
TATGTACTAGAAAAGATTTTCCGTAGCTGGTATGGCGTCCTTGCTTAAAA
TTAGCTAAAGTAAAATGACTAAATTAGGGCAAATTTCTTTTGAGGAAATG
GAAGTTTTGGTGTCGTTAAGCGCGCATCGTACGAGAATAAAGACGTTGTC
ATTAAACAACTCAATGCTGATATAACGgaagaacaatttttgaaggaGTG
TCACATTAACAAACTTGCGTCAAAAGACTGCTGTAATGTTGTTAAGTTCT
TGGGTGCATCATCATTTGACGACTACCTTATTATGCAGGAATATGTTGAA
TTTAATTTCTCTTTCTGTGGTGATAATCACGCCGTGTCATCTCTCattga
cttttttaaaagaGTAAACCAGAAGTCAAAATTTACCCAAATTGAGCACt
ttccatttttcattgcaCGCAACGTGGCAAGTGGCCTCAGCCATCTGCAT
AACCTGCGTATCGCCCACAGGGACCTAAAACCGGCAAATATACTAGTATC
CAACCAGCACTTTTCAAACGAAAAGGACCTATATCAACACAACCCAATCA
TCTGCAAGCTTGCTGACTTTGGAGAAAGCCGAACAGAAGTGCTGCACACT
AAAGCCATGTTGATGACTAGTGCAGCACGGAAGACAAGTGTCACCGATAT
TAGTAGAGGAACAATTGCATACTTGCCACCAGAGATGTTAGTTGAAAggt
aagaaatttt

Coding sequence (CDS) from alignment at sc0000683:120481..121240

>TCONS_00028514 ID=TCONS_00028514|Name=TCONS_00028514|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000683:120481..121240 (Clytia hemisphaerica)
ATGCAGGAATATGTTGAATTTAATTTCTCTTTCTGTGGTGATAATCACGC
CGTGTCATCTCTCattgacttttttaaaagaGTAAACCAGAAGTCAAAAT
TTACCCAAATTGAGCACtttccatttttcattgcaCGCAACGTGGCAAGT
GGCCTCAGCCATCTGCATAACCTGCGTATCGCCCACAGGGACCTAAAACC
GGCAAATATACTAGTATCCAACCAGCACTTTTCAAACGAAAAGGACCTAT
ATCAACACAACCCAATCATCTGCAAGCTTGCTGACTTTGGAGAAAGCCGA
ACAGAAGTGCTGCACACTAAAGCCATGTTGATGACTAGTGCAGCACGGAA
GACAAGTGTCACCGATATTAGTAGAGGAACAATTGCATACTTGCCACCAG
AGATGTTAGTTGAAAggtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016160XLOC_016160Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028514-proteinTCONS_00028514-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028514-exon-sc0000683-1491911889:120481..121240TCONS_00028514-exon-sc0000683-1491911889:120481..121240Clytia hemisphaericaexon
TCONS_00028514-exon-sc0000683-1510915933:120481..121240TCONS_00028514-exon-sc0000683-1510915933:120481..121240Clytia hemisphaericaexon
TCONS_00028514-exon-sc0000683-1575043694:120481..121240TCONS_00028514-exon-sc0000683-1575043694:120481..121240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000683supercontigsc0000683:120481..121240 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.257552	0.188365	0	0.0713245	0.347323	0	0.0827808	0.309994	0	0	0.326168	0.085764	0.0428224	0	0	0.0784724	0	0	0	0.0716236	0	0	0	0.0671185	0	0.185092	0.0882886	0.188448	0.0714656	0.0728121
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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