TCONS_00028506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028506
Unique NameTCONS_00028506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028506 ID=TCONS_00028506|Name=TCONS_00028506|organism=Clytia hemisphaerica|type=transcript|length=1601bp
taCAGTGGAAAGTAATGACAGAATTATTGGGATTGTTTAATGTCTGGTCG
ACCAGGAAATATTTACAACCACACGTGACACAGCACCCTGGAGTCAACAT
CTACCATGAGAAAAACTCAAATGTTTTGGATAGTGACCAATATATTGATA
TCAAGAAAAAATATGTTGAAGGGCAAGGAAGACCATGGTCTCTATCAAAT
AGGAGAACTGAAAAATTTAGAGACACCTTAAATGAATTTGAAGAACTACT
TGAAAGTCAATTTGTTGCTGGAATTGCATGGAGAAATACCCGTACTGTCC
AGCTCTTGCTCTCAAATGCTGTTATCATTACCATCACCATTGCTATTGAC
TCTGCTgatattgaaaagatattcattgACAAAACTTTGGTGGGCAAGCT
GCCTGATTTTATTTCAGATGGTGTCATAGAAGAAAGCTTTATGGTGCTTT
CatttgttgaaaaatcaaaattgacaaTCGTAAATTTTTCCAAGAAAGTC
ACAAGTGAAAAAAAGGATATTGAGAAATTGAGTTCATATGAGCCAAAGGT
TTCAATTGTGGATTTGCCTGGTCCAAGCTCCAGAAGGATAAAGAGAAATT
GTCTATGTAACACAAAATCTGATTTGGTTTGTGTATGGTGGAGTAATACA
ATTGAAGAAGCTTGGCCTTGGTCTCCTTTAGTTTCAGAGGCTGATCGCGC
GAATTTGGTACTTCTTTCAATTACCAACATATCAAGTGTATTCTCAGTTG
ATGTGATTGCTTACATGAGAACCGATGGAGATCCAATTGATGTTTGTTTC
agTCATAGTCAACCATATCAAAtcttaaccttggaacaaagtCAATCATC
ACGTGCAAAATATCTGCTTGAAGTCTGTATATATGAACTATATGGTGAAA
AGATTACAAAAGTAGCTGCAATGACTATCCCATTAAAAGCCAGAGTCGTA
TGTCAATGTCGAAATTATAAACAAGATAAAATTGCATTGACCTGTGGAAA
TCAATCTCTGatCTTGTGGGATGAATATCAGCGTAAAGCCAAAACCTCCA
AAACTAACTTTATTGCAAGCACAATTGAGTGGCATTCAGGAGACACAATC
TTTGTAGTTGCGAGTGTCAATGGAGATATACAAgTATTTGATATGGCTCT
GAATTGTTTCTATGTCCAACTTTCATGTGACGATTCAAATCCTACCACTA
CACTTAAACTTTCCCAGTTATTTTTTTCCAATCCCAAACTCAAACGTATT
TCTTGGGCAGTAGACAATGGTGTTGGTGCTCCTCCAGATGCAATTCCATG
TTCAGATGATTTACTCCTTGTTTTTGAGAGaGGACCAATCAGTGTACTTC
GTTTTGAGTTTGGTGTTTGCACTCAAGGCATGGTTACTCCCATCGAGTTA
ACATGTGAATACATCAAGAACGAGCAAATCACTGAGGCAATATCTTTACT
ATGCTCAATGAATTGGAACCAAATGGGGTCAGTTTGCTTTCAATGTTTAA
CTCTGATTACTGATCATCTCCTTCGACAGCGCTTTAATCAGCAATGTGAG
ACTGGTGTCGAGGACACCTTGGGAAGTTTTTATGCACCAGTCAGACCGTT
A
Run BLAST on NCBI

transcript from alignment at sc0000683:165508..174834-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028506 ID=TCONS_00028506|Name=TCONS_00028506|organism=Clytia hemisphaerica|type=transcript|length=9327bp|location=Sequence derived from alignment at sc0000683:165508..174834- (Clytia hemisphaerica)
TACAGTGGAAAGTAATGACAGAATTATTGGGATTGTTTAATGTCTGGTCG
ACCAGGAAATATTTACAACCACACGGTATGTCTTGATCATTTCATAATTA
ATTTGAAAACTACTCTTTCTGCAGCCTGTTTTTTGCAGGGGAGTGATTAA
GATAAAAGGGACCATTTCATTTAGCTTTCAAAAGGCACACTCCTTTGTGT
TTGTTATTTTCTCAAAGTCTGACTTGAAATTGAAACTAAGCAGAAAAAGT
TCTTCCAAAATCCAGAAATCGCATCTACTCTTTAGCTTTCTGATTAGGCT
GGGAGAGTATTGAAAAAGTGAACTAGTTTTGTTTTTCTTTACTGTTATCT
CTTAACTGTATACTGTTTCTTCTCAAGCTTCGAAACTTATATTTGTGTTA
TTGTTAACTATTTTAGTGACACAGCACCCTGGAGTCAACATCTACCATGA
GAAAAACTCAAGTACAATTTTACAGAAAAATTCAAATGTGTTTTTTTTTT
TTTAAGTCTCTGAAGGGACATATATCATTAGAAAACAAATTTGACTTGAG
TGATTTTTAAACTTTTTGTTGAAGGTGTCAAATCCTGAAAAAAACTTACC
CTTCATTATCCAGCATTATCTCATTTTTGTTGTATATTTCAGATGTTTTG
GATAGTGACCAATATATTGATATCAAGAAAAAATATGTTGAAGGTATTGT
TTTACTCATTGAGAAGAACAGCTTCATTGTTTCATAAATTTTCCGTAGTA
GACCAAAATCCATCCATTTCACTGAAATTTTCATCTTGATCGATAGCTTT
GGAAAGACAATATTTTGTAAATATTGCTTAATTTTGAAATTCATATAAAC
CAAAATTGGTTGGATGCTGCTTTGAACAGGGGGGGGGGGGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATGATTTCCAA
AAGCATGCTGCAAGAGCAAAAAATGTCACATACTTGGAAACAATCAAAAT
TTTCAAAAAAATGTCAGAAAATAAAATAAATTGTCATGCCAGAAATCACT
TGAGTTTTCTTCATTTTTTAAATGCATGTGGAAAAAAATGTCAAGTTCAC
GACAACAGTTTTCCACGTTTTGAATGCACGTGTAAGAAAATCTCCAAATT
TATCACAAAAGTTTCCACGTTTTAAATGTACATACTGTCAACTGCTTTAA
CTTGGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTTGTT
TTGATAACTCCATCAAGTTTATCAATCATACTTCCTTTCATAACATGTCA
CGATAACTTTCACTGATAGCGACGATTGGAGAATTAGAGAATGTCCGCTG
CCTATAACCGCCTATCGCCCGATTAACAAATAATGCGTGTGTAACTTGCC
GCCCGAGTGACGTCAAACGCTCCATCGTTTTGCCTTTTTTTTTAATACAC
CGTTCATTAACTCAAATCACATGACTTTGGAGGTTCGGTGAAATGGTGGC
CAAATTGCTGTCCCATGTTTTGTCACATAGTCCCAAGTTGGAGCAGTTGA
CGGTAAGAAAATCTCCAAATTCACGACAAAAGTTTCCACGTTTTAAAATG
CACGAGGGGAAGAAAATCTCCAAGTTCAAGAAAAATTTTAGTTGTACATG
TGAGTTGATTTCAAATTAATTACATCCATAATATCAATGCAATAAACCTT
TTAAAAAGTATAACATAACATTCTTCATTGTTCATATTGGGGACGTGGTG
TTCTGGATCCGGTTATATCAGCTTTAAAATTTGAAATTTATAACCGCAAC
GAGTTTTCACTAACTGTCACTAACCCCAGCAGTTAATTCATTGTTGTAGA
TAAAAAAACCAAGGGAAATTTAATCATTAACCAGTCAATTTTGCTCCAAG
TTTAAATTTTTAGCTAAAATCAGTTCATCAATCATTCCCATTTTGTTGCA
TCATCATTGTTGGCTTGCTTCCATTCGTTGGGTGCAAACTTTTTATATTG
CAAGTAAGTATGTAATAATCTATGTAATTTTTCAGGTATAACATGGTCAG
ATTTATTCACAGTCACTTGCCTTTGTACGATTTATGTAAATATACAAACA
AAATTGAAGTTAGTTTGTTGTGAAAGTTGATAAAATGTCCTGTTTTTCCA
ACACCAAGAGTCTAAGAGATTGTATTTATATCATCTCTCATTCCAGCTCA
TTCCAAACCAACAGAATGTAAACGAAACATCAAATCCAGAAAGTAATATT
AAGAAAAGTTCACTATCGACCATTCCTTGTGACAATCGTACAAAAATCAT
GATCCAATTAAACTCATCAAAGCATATAAACCAAAGCAAAGAAAAGTAGC
GAAAGGGCAAAAGTTGTTGTCTATTTTCTGCCATCTTTGTTTTGACAGTT
AGAAACAAAGCAGTATGGTCCGATCAACAATACGCTTCTGAAACGGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCATGTACAAACTCACGAAATTGACCAAAACCGA
GCGTTAGACTTGGAGGAGAAGAAATTTTACCGTTTTAACAAATATTTCCT
ATATAGATAGGAAATATTTAATAAAATGAAACGTTCTAGCAAAACGGAAC
GTTCTAGATCGTTCCTGAACGTTCTGAAGCATTCCTAAACGTTCTGGATT
TCATTTGTACTTCAAATCGCTTGTGATGACACAATTTTGAACTTCATATA
TACCAAAATTGCTTGGATGCTGCTTTGAAAAGTATAAAAGAATTTCCTTT
TCCTTTTGCAGGGCAAGGAAGACCATGGTCTCTATCAAATAGGAGAACTG
AAAAATTTAGAGACACCTTAAATGAATTTGAAGAACTACTTGAAAGTCAA
TTTGTTGCTGGAATTGCATGGAGAAATACCCGTACTGTCCAGGTATTTTT
ATTACAGCCCCTCTCAGCATCAATAATTTTATTTCTGTTCCTTTTAAACA
TGACTCAAAATATTGTGATAAAAGATCCAACTTGATGATTTTCCACTTCA
ATGCCTTTAAACAGAGAAAAGGTTTCCTTTTAAAAATCCCCCACTTTGTG
GGGGCTGGGTGAAAATCAATACAAAGCAGGAATGCTAAATGTTTTCTAAA
TAAGATTGAAAAATTGTAAACAATGTCAATGATATGTGAATATTTTGTAC
AGCTAGAATTTTGGCAATTAGCACTTTTCATCAGATGGATAAAAAACCAT
TGTGGTAATTTCTTTTTGGGATTACAAACAGGTAGTTTGAATTAGTTTTA
TTTATATATTGTCTTTTCAGCTCTTGCTCTCAAATGCTGTTATCATTACC
ATCACCATTGCTATTGACTCTGCTGATATTGAAAAGATATTCATTGACAA
AACTTTGGTGGGCAAGCTGCCTGATTTTATTTCAGATGGTAAGTTTGGGT
AATTAAGTTAAATAATAAGAGAAGCTTAAGAAATTTTGTATTTAAATAAT
GAAAGGAGCTTAATTTTTCAGTACTGACCAATTATCCACAAGTGTAAGCA
GAACAACATTTATTATTCTAGGTGTCATAGAAGAAAGCTTTATGGTGCTT
TCATTTGTTGAAAAATCAAAATTGACAATCGTAAATTTTTCCAAGAAAGT
CACAAGTGAAAAAAAGGATATTGAGAAATTGAGTTCATATGAGCCAAAGG
TAATTAACAAATTTATTGGTCTATTTCTCAGTTGCAAATTACCTAAAGGG
CTTCTCGACCTATAACTTAGTGATTATATGTATATTTTTTTACTAGGTTT
CAATTGTGGATTTGCCTGGTCCAAGCTCCAGAAGGATAAAGAGAAATTGT
CTATGTAACACAAAATCTGATTTGGTATGCAAGATATGGACCTTTTTCTT
TGTTCTGCTATATTAATTTTAATTCCATATTCTTGAAAAAAAATTTAAAA
ATCTATCCTAATGCGTATGCCTAATTAGTGTCATCGCAATCAACACAAAA
AACCAATCAAATTGAACTTTTTAGTTACAAAAATAATGCTCCCTACTCTA
CTCCATAACAGTCCAATTGTGGCATTGAGCTATCAGGCCAAATTCTAGAA
AGGCAGGGTAGTGTCCGTTATAACCAAAAAAGGGCACTTTTTCTGCTGGT
TTTTTCATAAAAAGGGTTATTTTCATAATTATTTTTCTTAATTCTTGAAG
AGCAGCACCCAATATTCAGACGTTAAAATGGCATAAAAAGTGGTCTAACT
ATTGTTAAACTATTAAAAACAAAGGACCAGTTTTTGAAAGTTTATGAATT
TTCCATTTCATTTGTATTAAAAATGGCTTGTGATAACACATTCTTGTTCT
TGGGGAAGAAAATATAGCTAGCTCCTGGTCAACCTCTCCCATTATTTTTA
GGAAATAACTGATAATATGTTTTAGGTTTGTGTATGGTGGAGTAATACAA
TTGAAGAAGCTTGGCCTTGGTCTCCTTTAGTTTCAGAGGCTGATCGCGCG
AATTTGGTACTTCTTTCAATTACCAACATATCAAGGTTAGTAGGTTCATA
GTGGTTCAAAACTCCTTCATCTAAGAAGGATCTGTCTCACTGAATTTAAG
AATAAAAGTTTATTTTATTTTTTTAAAGTTTCTCAGAATGTAAATGTAAT
GAAATTTGTCAGAATCCCCCTTTAGGATACCCAGGCTAAAATTCACACCT
AAAGTTTTAAGCTATTTTAAAAGTTCTCTTCAAGATCAAAACTGCTAAAT
TTAGGGAGAAGATACTAAATCATAACGGATATTATAAAATGCTACAGCTA
CAGGTTCTCGTTCCTATAAGATAACAATAGCTATGGAGAAACCATTAAAT
CATCCTTTTCAGTGTATTCTCAGTTGATGTGATTGCTTACATGAGAACCG
ATGGAGATCCAATTGATGTTTGTTTCAGGTATTTTTGTTTTTTTTGTTAT
ATATAATAATCAACAAAAGTTTTCACACAATGTTTGATGTAGATGTACTT
TAAAGATTTCATGGGGTCTTATAATTCTGTGAATGACTCTTTTATGAGAT
AATATTTTACGATTATTTTGTGCTATTTTTGCTGTTTCACTGCCAAACTA
TGTTGGTTGTGAAATACGCATTATTAGCGCCTCTTTGATGGCAGTACACA
TGTTTAGAATTTAACTCAAAAAAAAATTTGCGAATAAAACCTTTTCAAAT
TTCCATTGGAACCTATTTTGTGAATGATAAACCAAAATTGCATAATCTGT
GAAATGTAATCTCGTCTGTTTGAAACAGATCTCGTCTGTTTGAAACAGAC
CTTAGATTTAACTAATACAGGATTTTTGGACCTACCCCAGAGGTCTTTTA
AATTAACCTGTGTACTTCTGTCTATCCGTCTGATGCAAGCTTTTCTCAGG
ATTGGCTCATTTGATTTTTCAGATTTTTTAAAGAATGATGTAAATGGTAA
TGCCCAAAATGTGACACAGCCCGATTTTTGAAAAAAAAATTAATCCAAAA
ATATGCCGGAAAAAACAGTTTTTTTGGCATTTTCTCAAAATTTTATTTTA
TCATTAGTTTTTCTGATTTTTCGCATAAAGATGTGCAAAACATAACCAAG
TCCAATTTTAGAGGAAAATTTTTTCCAGCCGAAAATCCCGGAGTTATTTT
TTTGCACATTTTCGTTGGTTTTTTTTTCACACAAAAACATTATTGATGCC
CACCATCAAGCATGATTTAATTGTCAATAAAACTGATCGTTCTTTTCCAT
TATGGCTTTAAACCACAGGGACTTTTCGTAACTCAAACTTCCTCAATTCG
ATTAATTCCATAAACTCAAACGATTTTCTGGTCTCTTGAGGAGATTCTTA
GGCTATTCTACGTCTCTATAACTGGAATTTCAGTAACTCAAACAATTACT
GATAATCCCCTTGGCGTTCCAGCACTCAACTATATTACACTTTCCTACTT
GCTCTAACTTTAATCATCAGGTAGGTCCAATAAGCGTTCAGGCTTTTTGT
ATAATTGCTTCATTTGTTTTCTTAGTCATAGTCAACCATATCAAATCTTA
ACCTTGGAACAAAGTCAATCATCACGTGCAAAATATCTGCTTGAAGTCTG
TATATATGAACTATATGGTGAAAAGGTACATTCAACAATCAATTATATTT
TAGACTTGTTTTTTTCTTGTTAATGATTTCGAAAGTAATGGTCTTGTATT
ATAATTAACAAAATCCTTTTCTCTCCAGATTACAAAAGTAGCTGCAATGA
CTATCCCATTAAAAGGTGAATTTAAATTGATGGTTTTTTTTAGTTTTTTT
CATTTTGGAATTGTCCATCACAAACTGTGAATCAAGAAATCTGATTGTTT
CCTTGTGGACTTATGGTGATATTTGCTTCACCTTCCGGATGCAACAAGTA
CAAGTTTCTTTGTTCTTTTCATCTCAAAAGATGGTAATGACTTTCAGGTA
AAGCATAAATACTTACTGTACCTTCTTCTATGATGGAAGGTGCGTATCAC
TCAGCCAATGTTAATTCTTTGTTTCTTTCAGCCAGAGTCGTATGTCAATG
TCGAAATTATAAACAAGATAAAATTGCATTGACCTGTGGAAATCAATCTC
TGGTACGTCAATATTAAGTCTGCTACTAAGAAGCATCCTGCTCTTTAAAA
ATTATCCCATGGTTCTTCGTTTGAAATTAGAAAATCTTATTTTGAATAAC
AAATTATAGTTTGTTTTTTTAGATCTTGTGGGATGAATATCAGCGTAAAG
CCAAAACCTCCAAAACTAACTTTGTATGTATTGATAGATTCTTCTTTGGC
TTTGAGAAAAACTCAATGACAATCCTACACTTGTTACTGATATGCCTTTG
ACCCTCCTACCTGCTCCTCGAAAAGAAACTTGTGATGACTTTTCCATTTA
GATTGCAAGCACAATTGAGTGGCATTCAGGAGACACAATCTTTGTAGTTG
CGAGTGTCAATGGAGATATACAAGTAAGTTCTGTAAAGTTACCTTTTGAT
AACTGACTTTATTTAAAACAAAATCAAGAAAGACCATCCATGTTGATACC
ATCCTTGTCTTAACCAACTCAAAATTTACTTAATTCTTTGAATATTATAT
CTGGATTATTGTTATTGTTTTTAGGTATTTGATATGGCTCTGAATTGTTT
CTATGTCCAACTTTCATGTGACGATTCAAATCCTACCACTACACTTAAAC
TTTCCCAGTTATTTTTGTAAGTGTAACAGCTGTTCATTGGAGTTTAAAAG
CACTCAACCTTTTATTGAATCAGATTGAATCAATGACTCTTCTTTGAAGA
TGAACTTCATAACAAATATTTCTTTTGATCAACATGTGAAAAAGATAAAG
TTCTTTTTTTCAGTTCCAATCCCAAACTCAAACGTATTTCTTGGGCAGTA
GACAATGGTGTTGGTGCTCCTCCAGATGCAATTCCATGTTCAGATGATTT
ACTCCTTGTTTTTGAGAGGTAATTTTTTATTCCTATCTACTATTCAGAAA
ATTTATCATAATTGCTAATTTTTATGCCTTACTGAATACAGTTCTACTGA
TCCAGCAAGAAAATGTTAATGCAAATAGATCAAGTGACAAAATCACTTTG
TCTTCTAACAATAATAAATTCACTGAATTAATATATTTTAATGAAGTCCC
TGGCATACTTTTAAACATTTCCAATTCAGCTTTTACTTTGTTGTTACTTT
CTTTGTTTTAGAGGACCAATCAGTGTACTTCGTTTTGAGTTTGGTGTTTG
CACTCAAGGCATGGTTACTCCCATCGAGTTAACATGTGAATACATCAAGA
ACGAGCAAATCACTGAGGTGGATCACATTCCTCTTCGTCTTCCTTCAATA
CTGTCTTTGAAACAATTAGATAATGTATGAAGCAAAGTTTTTCTTAGCAG
CAAAAGAAGTTTTGTAACCACTGCAAATGATCACTGTGAATGAAGTTAAT
TTTTAACTATCCTTTATTTCCAGGCAATATCTTTACTATGCTCAATGAAT
TGGAACCAAATGGGGTCAGTTTGCTTTCAATGTTTAACTCTGATTACTGA
TCATCTCCTTCGACAGCGCTTTAATCAGCAATGTGAGAGTAAGTAGACTC
TTTTGATATGTTGATCATGTTATGTTTTCATGATGTATTTTATGATTTAT
GTTAAAGTAAATGCACAAACCTTTTGCTACTCTTCCTTGCCACTTTTTCT
ATTGCACATCACATCTTTCTCTTGTAGCTGGTGTCGAGGACACCTTGGGA
AGTTTTTATGCACCAGTCAGACCGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016152XLOC_016152Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028506-exon-sc0000683-1575043694:174760..174834TCONS_00028506-exon-sc0000683-1575043694:174760..174834Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:174374..174418TCONS_00028506-exon-sc0000683-1575043694:174374..174418Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:174142..174192TCONS_00028506-exon-sc0000683-1575043694:174142..174192Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:170843..170973TCONS_00028506-exon-sc0000683-1575043694:170843..170973Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:170347..170464TCONS_00028506-exon-sc0000683-1575043694:170347..170464Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:170086..170213TCONS_00028506-exon-sc0000683-1575043694:170086..170213Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:169911..169988TCONS_00028506-exon-sc0000683-1575043694:169911..169988Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:169250..169359TCONS_00028506-exon-sc0000683-1575043694:169250..169359Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:168857..168922TCONS_00028506-exon-sc0000683-1575043694:168857..168922Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:167660..167759TCONS_00028506-exon-sc0000683-1575043694:167660..167759Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:167520..167556TCONS_00028506-exon-sc0000683-1575043694:167520..167556Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:167183..167253TCONS_00028506-exon-sc0000683-1575043694:167183..167253Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:167012..167062TCONS_00028506-exon-sc0000683-1575043694:167012..167062Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:166812..166883TCONS_00028506-exon-sc0000683-1575043694:166812..166883Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:166569..166660TCONS_00028506-exon-sc0000683-1575043694:166569..166660Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:166317..166421TCONS_00028506-exon-sc0000683-1575043694:166317..166421Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:165968..166073TCONS_00028506-exon-sc0000683-1575043694:165968..166073Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:165697..165811TCONS_00028506-exon-sc0000683-1575043694:165697..165811Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1575043694:165508..165557TCONS_00028506-exon-sc0000683-1575043694:165508..165557Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:174760..174834TCONS_00028506-exon-sc0000683-1510915933:174760..174834Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:174374..174418TCONS_00028506-exon-sc0000683-1510915933:174374..174418Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:174142..174192TCONS_00028506-exon-sc0000683-1510915933:174142..174192Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:170843..170973TCONS_00028506-exon-sc0000683-1510915933:170843..170973Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:170347..170464TCONS_00028506-exon-sc0000683-1510915933:170347..170464Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:170086..170213TCONS_00028506-exon-sc0000683-1510915933:170086..170213Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:169911..169988TCONS_00028506-exon-sc0000683-1510915933:169911..169988Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:169250..169359TCONS_00028506-exon-sc0000683-1510915933:169250..169359Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:168857..168922TCONS_00028506-exon-sc0000683-1510915933:168857..168922Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:167660..167759TCONS_00028506-exon-sc0000683-1510915933:167660..167759Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:167520..167556TCONS_00028506-exon-sc0000683-1510915933:167520..167556Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:167183..167253TCONS_00028506-exon-sc0000683-1510915933:167183..167253Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:167012..167062TCONS_00028506-exon-sc0000683-1510915933:167012..167062Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:166812..166883TCONS_00028506-exon-sc0000683-1510915933:166812..166883Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:166569..166660TCONS_00028506-exon-sc0000683-1510915933:166569..166660Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:166317..166421TCONS_00028506-exon-sc0000683-1510915933:166317..166421Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:165968..166073TCONS_00028506-exon-sc0000683-1510915933:165968..166073Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:165697..165811TCONS_00028506-exon-sc0000683-1510915933:165697..165811Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1510915933:165508..165557TCONS_00028506-exon-sc0000683-1510915933:165508..165557Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:174760..174834TCONS_00028506-exon-sc0000683-1491911889:174760..174834Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:174374..174418TCONS_00028506-exon-sc0000683-1491911889:174374..174418Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:174142..174192TCONS_00028506-exon-sc0000683-1491911889:174142..174192Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:170843..170973TCONS_00028506-exon-sc0000683-1491911889:170843..170973Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:170347..170464TCONS_00028506-exon-sc0000683-1491911889:170347..170464Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:170086..170213TCONS_00028506-exon-sc0000683-1491911889:170086..170213Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:169911..169988TCONS_00028506-exon-sc0000683-1491911889:169911..169988Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:169250..169359TCONS_00028506-exon-sc0000683-1491911889:169250..169359Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:168857..168922TCONS_00028506-exon-sc0000683-1491911889:168857..168922Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:167660..167759TCONS_00028506-exon-sc0000683-1491911889:167660..167759Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:167520..167556TCONS_00028506-exon-sc0000683-1491911889:167520..167556Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:167183..167253TCONS_00028506-exon-sc0000683-1491911889:167183..167253Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:167012..167062TCONS_00028506-exon-sc0000683-1491911889:167012..167062Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:166812..166883TCONS_00028506-exon-sc0000683-1491911889:166812..166883Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:166569..166660TCONS_00028506-exon-sc0000683-1491911889:166569..166660Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:166317..166421TCONS_00028506-exon-sc0000683-1491911889:166317..166421Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:165968..166073TCONS_00028506-exon-sc0000683-1491911889:165968..166073Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:165697..165811TCONS_00028506-exon-sc0000683-1491911889:165697..165811Clytia hemisphaericaexon
TCONS_00028506-exon-sc0000683-1491911889:165508..165557TCONS_00028506-exon-sc0000683-1491911889:165508..165557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000683supercontigsc0000683:165508..174834 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.07462e-08	0	0.552715	0	0.461234	0.0980088	0.370224	0.204579	0.466229	0.444167	0.100375	2.28206e-05	0	0	0	0	0.312072	0.316706	0.0129484	0	0.328159	0	0	0	0	0.068957	0.0240256	0.221157	0
Blast
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BLAST of TCONS_00028506 vs. Swiss-Prot (Human)
Match: FRITZ (WD repeat-containing and planar cell polarity effector protein fritz homolog OS=Homo sapiens GN=WDPCP PE=1 SV=2)

HSP 1 Score: 362.459 bits (929), Expect = 1.660e-115
Identity = 198/533 (37.15%), Postives = 314/533 (58.91%), Query Frame = 3 
Query:   15 MTELLGLFNVWSTRKYLQPHVTQHP-GVNIYHEKNSNVLDSDQYIDIKKKYVEGQGRPWSLSNRRTEKFRDTLNEFEELLESQFVAGIAWRNTRTVQLLLSNAVXXXXXXXXXXXXXEKIFIDKTLVGKL-PDFISDGVIEESFMVLSFVEKSKLTIVNFSKKVTSE--KKDIEKLSSYEPKVSIVDLPGPSSRRIKRNCLCNTKSDLVCVWWSNTIEEAWPWSPLVSEADRANLVLLSITNISSVFSVDVIAYMRTDGDPIDVCFSHSQPYQILTLEQSQSSRAKYLLEVCIYELYGEKITKVAAMTIPLKARVVCQCRNYKQDKIALTCGNQSLILWDEYQRKAKTSKTNFIASTIEWHSGDTIFVVASVNGDIQVFDMALNCFYVQLSCDDSNPTTTLKLSQLFFSNPKLKRISWAVDNGVGAPPDAIPCSDDLLLVFERGPISVLRFEFGVCTQGMVTPIELTCEYIKNEQITEAISLLCSMNWNQMGSVCFQCLTLITDHLLRQRFNQQCETGVEDTLGSFYAPVRPL 1601
            M+  L   ++WS +  L  H+     G+  Y++K          ++ K+K  E +  PW+L NRR EK RD+L E EEL+++       W+N    QLL  + V+++++++      EK+ ID++LVGKL  D ISD ++ +SF++LSF+ ++KL  + F+KK+ S    K +EKLS+ + K+   ++PGP ++  +R+   N   D V  WW    ++AWPW+P+ SE DRANL+LL          ++V++ +RT+ DP+DV F   QPYQ+ T+E S S   + + + CIYE    KI  V+   IPLK++ +  CRN  +DK+ L C + SLIL++ ++R    ++T  + S I  H    I +V S  G++Q+FDMAL+   +QL  +D  P  TL+ S+LF ++  L ++ W     V    +     D L L FERGP+ VL F+ GV T+G +  I++  +YI  ++I EAI++L SMNW+ +G  CF  ++ I +HLLRQ+   + E  +E +LG+FYAP RPL
Sbjct:   34 MSFCLTELHLWSLKNTL--HIADRDIGIYQYYDKKDPPATEHGNLEKKQKLAESRDYPWTLKNRRPEKLRDSLKELEELMQNSRCVLSKWKNKYVCQLLFGSGVLVSLSLSGPQL--EKVVIDRSLVGKLISDTISDALLTDSFIILSFLAQNKLCFIQFTKKMESSDVNKRLEKLSALDYKIFYYEIPGPINKTTERHLAINCVHDRVVCWWPLVNDDAWPWAPISSEKDRANLLLLGYAQ----GRLEVLSSVRTEWDPLDVRFGTKQPYQVFTVEHSVSVDKEPMADSCIYECIRNKIQCVSVTRIPLKSKAISCCRNVTEDKLILGCEDSSLILYETHRRVTLLAQTELLPSLISCHPSGAILLVGSNQGELQIFDMALSPINIQLLAEDRLPRETLQFSKLFDASSSLVQMQWIAPQVVSQKGEGSDIYDLLFLRFERGPLGVLLFKLGVFTRGQLGLIDIIFQYIHCDEIYEAINILSSMNWDTLGHQCFISMSAIVNHLLRQKLTPEREAQLETSLGTFYAPTRPL 558
The following BLAST results are available for this feature:
BLAST of TCONS_00028506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FRITZ1.660e-11537.15WD repeat-containing and planar cell polarity effe... [more]
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