TCONS_00028503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028503
Unique NameTCONS_00028503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028503 ID=TCONS_00028503|Name=TCONS_00028503|organism=Clytia hemisphaerica|type=transcript|length=834bp
ACAGATTTCCTTCCATTTGGTGAAGAATTTGGAGATGATTATGGAAATGC
AGGTGATGATGTCGCAACATGTTTTTCTTCCTTCTCTCAAGAATTTCCAC
TTTTCTTTACGAAGAATCACTCAAAAATTTGTataaGCAGTAATGGATAT
ATTACAGTAGACAAACATGTAAGAAGAGTTGCTGCTTCACTAACATCCGA
CTACACCGTCCTTGTGCCATTCAATCACGACATGAGAAGCCTTGGCaacg
atactttttttccgagcaactaaaaataaaactattttgAAAACGATTGA
CGAAGACATTGCGCAGAAACACCACTCCGGAGAATTTCGCAATAATTATC
AAGCTGTGCTTGCTACAGACTATGATAAGGTGTACGCAATATTCCACTAT
GAAAGGATGGATACTCGTGGATATAATAACATTGGTTTCAATGAGCCAAT
TACAACTAACCCATGTAACATAACATTGATATTTAATTTGAATGAGAACA
ATCTTACAACGTCTTCCAACATTGATAAACCTGGAAAATTTGTCTTTTTA
CTTGAAAGCCCCAAATGCTTATACTGTCCACATGGTTTCCGAACAGTAAA
TGCATCATGCCAAAAACTCGACGAATTCATTATGGTTGTAGACGGAAATG
AAATCATATTCTTAGATGCTAAACTCGATGATGAGGCTGTTCTACCTAGT
CAACCAATTCCCAATTTACAATATGCTGCTGCCATTGATTTCGATTACGA
GAGCAGGATGATATATTATTCAGTCGGCATAGAGGGAACTATTAGCCGTG
TTGATATTTATGGAAATAACAAGATAGTTATGGC
Run BLAST on NCBI

protein sequence of TCONS_00028503-protein

>TCONS_00028503-protein ID=TCONS_00028503-protein|Name=TCONS_00028503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MDTRGYNNIGFNEPITTNPCNITLIFNLNENNLTTSSNIDKPGKFVFLLE
SPKCLYCPHGFRTVNASCQKLDEFIMVVDGNEIIFLDAKLDDEAVLPSQP
IPNLQYAAAIDFDYESRMIYYSVGIEGTISRVDIYGNNKIVM
Run BLAST on NCBI

transcript from alignment at sc0000683:83032..86030-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028503 ID=TCONS_00028503|Name=TCONS_00028503|organism=Clytia hemisphaerica|type=transcript|length=2999bp|location=Sequence derived from alignment at sc0000683:83032..86030- (Clytia hemisphaerica)
ACAGATTTCCTTCCATTTGGTGAAGAATTTGGAGATGATTATGGAAATGC
AGGTGATGATGTCGCAACATGTTTTTCTTCCTTCTCTCAAGAATTTCCAC
TTTTCTTTACGAAGAATCACTCAAAAATTTGTGTAAGTCAACAATCATTT
CAAAATTTAGGTTAATACTAAAATATTACTGTGCGTGGTTTACTTCGATA
CTCTCTTTGCAGGCCCGGTGGAAGCAGGGAGACTGGGAAGACTAACCTAA
TTTTGAGCAAACAGCACGATTTTTCACTAATTCCTAGTGAAATTCAACTT
ATTTCAGCCTTCAGCGTCCCCACCGTTCCGCCGGGCTTGCTTTGATAGCA
CGTATTTAGTACCCCATTTATTCACTCAGCGCTCATCGATCACCTTGAAA
GTCTGATGGACAGGTGGATATGTAGTAGTAGTGTTTATTTATTTCTCTAT
AACAAGACTAGCGACCACATCATAGAAAAAATCTAAACTAAGGAGGTAGT
AGCAAAATTGTTAAGTTACAAGAAATTTTTTATAAAAATAAGTACCTATG
TTAATGTAAGATATAAATGAATCTACGGCTAGAGTAGATAATTTGATAAA
AATAATTAGAAATATTGCGACAGGTAATATAATTTAATCAAGTCTTTAAG
ACGATCCAATTCTAAGGTTGACATATCATCAAAGGTCAAGAATTTCTGAA
GTTCATTCCAAGATAAAATGGATTGATATAGTACTGAGTAATTGCCATAA
GTTACTGTGGAGACCTCGGGAAGTTATAACAGTCCAGATTTACATCGCGG
CATGACTTCACGACGCTCAACATCATCAAGACGAGTCAAAATGAAGTGTT
CTTACAGAGGAGGTGGTAACATTTGATTAAAGATTTAGTAAATAAAAATA
TTATTTAGGTATTTTACAAAGTCAAAAAAGGTTAAAAGAGTATGATCCAA
GAAGAGAGGTGAGAGAAAATCGGAAAATGTCATAACTTGGAGAGCTTGCT
TTTGTAGTGTTAGAATTCGACGGGCGTGAACAGATTACTCTAGATCATAA
TCATTATTCGTGTTGGCAAGTACACGATACGTTCGAATAATGATTTCATT
TTCATTTTTAGATAAGCAGTAATGGATATATTACAGTAGACAAACATGTA
AGAAGAGTTGCTGCTTCACTAACATCCGACTACACCGTCCTTGTGCCATT
CAATCACGACATGAGAAGCCTTGGCAACGATACTTTTTTTCCGAGCAACT
AAAAATAAAACTATTTTGAAAACGATTGACGAAGACATTGCGCAGAAACA
CCACTCCGGAGAATTTCGCAATAATTATCAAGCTGTGCTTGCTACAGACT
ATGATAAGGTGTACGCAATATTCCACTATGAAAGGATGGATACTCGTGGA
TATAATAACATTGGTTTCAATGAGCCAATTACAACTAACCCATGTAACAT
AACATTGATATTTAATTTGAATGAGAACAATCTTACAACGTCTTCCAACA
TTGATAAACCTGGAAAATTTGTCTTTTTACTTGAAAGGTGCGTACCCATT
GTTCTATTTGAAGAATTTGCTGCACCTACACGTTTTTTTTTTAATTAGAA
CCTAGTTTATAAGAACATAAAGGCTGAAATTCGTCGAAAAATTAAGAACT
TCTTAAGAACATGCCCAGCCTCAGTTTGGAAAAAAATGACAAGAAACTAC
AATTTTTTCCTCTTTTTAAGCAGTTTTAACCGAATTTAGGGGTGGATCTT
CAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGA
ACGCATTTAAGAACATTATAGGCTGAAAATTGCTAAAAAAATAAGCACAT
CCAGGCTCAGCCAAATTTTAGGTGTTCTAATAAAAAAAAACGTGTACCAC
AGCACAAAAGTTTATATAAAAACATCCACATGTCATTAAGTTTTCCATGC
TGCATTTGCTGATAAGAAAATATGTTAAAGTCGAATGAGAAAAGTACCTT
AAAGCCTGGGGGTATCACCCTTGCCGACCGACGGGGGTGCACCACTGAGG
TTCGAAAAATTGACCCTACGTTGGACTCGTTTTTTGAAAAATTTTACCGA
AATTTGCGGAAAAAGTGACCCTGAATAGGACTGAAATTCCAAAATGTTCT
CAAAATTTGCTACTTTTCCCAAAAACTTTCCAGAAAAGGCACCCTACGAG
GGACTGATTTCTCAATTTTTGTGTTTTTTTGTGACCCTACCTGGGACTTG
TGAAGGTGAAAAAAGGTACCCTGACTAACGGCGCATCCCCATTACCCAGT
TTGCCCTAGTACCCCCGGGCCTTAAAGGGACATAAAGTACAGACGGCGAA
ACAAACTGTACACAGCGAGATACAAAATCAAAACAAATCTCACATATCAA
AACAAAAATCCAAAATAGAATATGGCTGATTTTAATTGTTTCTATTGTTT
TCTAAGTTTGTTTTGGACACGTGATTTTAATTGTTTTCTTTTAATGACAC
GTGGTTTTCGCAATGGTTACATTTACTACTTTTATGTCCTTTTAAAAAAT
ATTTTGTCTTCTGTTTACTTTAGCCCCAAATGCTTATACTGTCCACATGG
TTTCCGAACAGTAAATGCATCATGCCAAAAACTCGACGAATTCATTATGG
TTGTAGACGGAAATGAAATCATATTCTTAGATGCTAAACTCGATGATGAG
GCTGTTCTACCTAGTCAACCAATTCCCAATTTACAATATGCTGCTGCCAT
TGATTTCGATTACGAGAGCAGGATGATATATTATTCAGTCGGCATAGAGG
GAACTATTAGCCGTGTTGATATTTATGGAAATAACAAGATAGTTATGGC

Coding sequence (CDS) from alignment at sc0000683:83032..86030-

>TCONS_00028503 ID=TCONS_00028503|Name=TCONS_00028503|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000683:83032..86030- (Clytia hemisphaerica)
CCCCAAATGCTTATACTGTCCACATGGTTTCCGAACAGTAAATGCATCAT
GCCAAAAACTCGACGAATTCATTATGGTTGTAGACGGAAATGAAATCATA
TTCTTAGATGCTAAACTCGATGATGAGGCTGTTCTACCTAGTCAACCAAT
TCCCAATTTACAATATGCTGCTGCCATTGATTTCGATTACGAGAGCAGGA
TGATATATTATTCAGTCGGCATAGAGGGAACTATTAGCCGTGTTGATATT
TATGGAAATAACAAGATAGTTATGATGGATACTCGTGGATATAATAACAT
TGGTTTCAATGAGCCAATTACAACTAACCCATGTAACATAACATTGATAT
TTAATTTGAATGAGAACAATCTTACAACGTCTTCCAACATTGATAAACCT
GGAAAATTTGTCTTTTTACTTGAAAGCCCCAAATGCTTATACTGTCCACA
TGGTTTCCGAACAGTAAATGCATCATGCCAAAAACTCGACGAATTCATTA
TGGTTGTAGACGGAAATGAAATCATATTCTTAGATGCTAAACTCGATGAT
GAGGCTGTTCTACCTAGTCAACCAATTCCCAATTTACAATATGCTGCTGC
CATTGATTTCGATTACGAGAGCAGGATGATATATTATTCAGTCGGCATAG
AGGGAACTATTAGCCGTGTTGATATTTATGGAAATAACAAGATAGTTATG
ATGGATACTCGTGGATATAATAACATTGGTTTCAATGAGCCAATTACAAC
TAACCCATGTAACATAACATTGATATTTAATTTGAATGAGAACAATCTTA
CAACGTCTTCCAACATTGATAAACCTGGAAAATTTGTCTTTTTACTTGAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016151XLOC_016151Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028503-proteinTCONS_00028503-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028503-exon-sc0000683-1575043694:85899..86030TCONS_00028503-exon-sc0000683-1575043694:85899..86030Clytia hemisphaericaexon
TCONS_00028503-exon-sc0000683-1575043694:84494..84919TCONS_00028503-exon-sc0000683-1575043694:84494..84919Clytia hemisphaericaexon
TCONS_00028503-exon-sc0000683-1575043694:83032..83307TCONS_00028503-exon-sc0000683-1575043694:83032..83307Clytia hemisphaericaexon
TCONS_00028503-exon-sc0000683-1510915933:85899..86030TCONS_00028503-exon-sc0000683-1510915933:85899..86030Clytia hemisphaericaexon
TCONS_00028503-exon-sc0000683-1510915933:84494..84919TCONS_00028503-exon-sc0000683-1510915933:84494..84919Clytia hemisphaericaexon
TCONS_00028503-exon-sc0000683-1510915933:83032..83307TCONS_00028503-exon-sc0000683-1510915933:83032..83307Clytia hemisphaericaexon
TCONS_00028503-exon-sc0000683-1491911889:85899..86030TCONS_00028503-exon-sc0000683-1491911889:85899..86030Clytia hemisphaericaexon
TCONS_00028503-exon-sc0000683-1491911889:84494..84919TCONS_00028503-exon-sc0000683-1491911889:84494..84919Clytia hemisphaericaexon
TCONS_00028503-exon-sc0000683-1491911889:83032..83307TCONS_00028503-exon-sc0000683-1491911889:83032..83307Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000683supercontigsc0000683:83032..86030 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12886	0	0	0	0	0	0.192017	0	0.111934	0.449832	0	0	0	0.0674683	0.0829342	0.0345906	0.0491574	0	0	0.0631433	0.167205	0	1.67354	2.03981	2.27277	0.991014	0.47306	0.951819	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0110426-blade_b-propeller_TolB-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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