TCONS_00028451 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00028451
Unique Name	TCONS_00028451
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2179

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000681:2617..13191+

transcript sequence

>TCONS_00028451 ID=TCONS_00028451|Name=TCONS_00028451|organism=Clytia hemisphaerica|type=transcript|length=2179bp
CGTTCGTTTTAGATATTATATTACTTTTACATGTATCCTGGAAGAGCTGT
TCGGAAGGAACACCCACAATTACGCACGCCCGTCAAAGACCTTCAAACCA
GAGTAGCCCAGCAATCACCATCGAATTCAGTGTCACCTTTGGTTTCACCC
AAACGACTCAATAAACCGAACGGAAAAGGTGAAACACTTTTGCACGTGGC
TTGTAATAAGCGCAAAATTCATCGAATCAAAGCGCTCATCGAAATGGGTG
CTAAAGTTAACACACAAGACAACGCAGGGTGGACGCCCTTACATGAGGCG
TGTTGCTTTGGTAACCACGAAGTTGTGCAAGAACTCATGAAAGCCCCCGA
TATTGATTTAACGTTGACACGTGGTAAAAAGACGCAATGCATTGATGGAA
CTACCGCATTGCATGATGCTGTAGAGAATAATTTCCTTAATATCGCCGAG
TTCTTGTTACAAAAAGGAGGTCGAGACCTACTTCATTTGAGAAGAGCTGA
TGGGAAGACACCACTTGATATTTGCCGAGAACCGTCGGCGATGAAaacct
tgttgaaaagatatgagAATGTGGAGTCATCTTCTGACTATACTAACGTC
TCAATTGTTGCAAATCAACAGGTTGCTGTGAGTAGCATAAATAAAGAAAT
GTACCAGAGTTTCGTTTCACCTGAACCTCAGAATATGGAATTCTTTTTAC
AAATACTTTTGCAACTTATTACCAGTTACCGGGAATCGAACATAGACGGC
TTAAGATGCAATTTGAGCCAACTTGAAGCANATATGGAATTCTTTTTACA
AATACTTTTGCAACTTATTACCAATTACCGGGACTCGAACATAGACGGCT
TAAGATGCAATTCGAGCCAACTTGAAGCCCAATACAATGATTTATTGATG
CATGTCAAATTACTGAATGGGGATAAGATACCCCTCAAATGCAAACTGAC
TTTGAAACAAATTAAACGCGTTTTGTTTAGCTAAGAGAGAAGTATTACAT
ATGATTTTGTTACTGAAGGGTTTTATTCATTCATATTTCAGAGGTCAATA
CGGGGATTTGTTAACAGCAGTTTGACAATTATTGTAATGCTCGTctcttt
tagttttttaaagagGAATTTTCACTCTTTTATATACGCCATATCGACCT
ACAGTTTATGAAATTAGATGCTACGACCCAAAGACTATGGAGTCGATTCA
TTACTATGTAGTCAGATTACTCTGACGTCTTTTATTCAACCCAAGGAAAT
TTTTTCTGTCATAATGGTAGGtattcttcattcttctgtCTGCCTCTCTC
ATCACCCCCCCCTCCGTCCATTCTCTTTTTCACCCTTCCCCCTTTTTCTC
CGACGTGAAGAGATGTTTATACggtcttaaaggttttgtttttaaataga
gTGATATCGGTTGCTTactcacaagctttttcatattggattgacacaga
tgtggagaaagattggtcagaaagaggaaaatgaaaatatttttttgctt
atatcagcatgatATAACAAGAGGCAGACACATGTCCTGGTATGataatg
tgtctgatatgaaacgggaacgcttatataaaaacaaaacctttaagata
tTAGCTTTAAATATAGTAGTGATATCAGTGATAAAGGCAACGGCTTAACC
GATAGATATTTAAAGGTAACAGACCTTTCatgaattattttgagtgcaac
gactgcctcgttttgaaaccatggTGAGACTTCAAGTGTTGCTTTTTAAA
TAGAGTGAATTTCGAGGTAAGGATTGTTCATGCCTTAATACAAGAAAAGG
TGTAcataagaaatatttgaaagcAAACCTGATTAAATTAGGTCGGAAAT
TTTCATTAGATATTGAAGATTCTTTGTGTAAGTTTTTTCACTGTATACAT
TTTTGAGTGATTTTCAATCCATCAAAGTTTTTATGGGAATTGGACTTGAG
GTGGGGTCATGGTATGATTTATGAGATATATTTATTGTAGTGGTATttac
agggggggggtcagtagtaaaatctcagacataatgacgtttactacggt
ggtggtgtgacaaaaaatctaaaaaattttttactacctagggtagttaa
atactaaaataggtggtatctatgtgttaaatgttgaaaaaattttacta
cctgggtagttaaaactggtaaaattagc

Run BLAST on NCBI

transcript from alignment at sc0000681:2617..13191+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00028451 ID=TCONS_00028451|Name=TCONS_00028451|organism=Clytia hemisphaerica|type=transcript|length=10575bp|location=Sequence derived from alignment at sc0000681:2617..13191+ (Clytia hemisphaerica)
CGTTCGTTTTAGATATTATATTACTTTTACATGTATCCTGGAAGAGCTGT
TCGGAAGGAACACCCACAATTACGCACGCCCGTCAAAGACCTTCAAACCA
GGTTTGTATTGCCAGCCATCTTACGTCTTTTCGTGTCATTGTACAGTATA
CAAAATTTATAAGCTTGATAGAGTGAACttatatctttaaaaaaagtcaa
taaGCGGGGACCCTTATAACCGGTATAACCTTACCTATAACCGGTTCTAG
TCTGAATGACAGACAAAACTGCATCACCACGGACCCGATAGAGGATATCA
GAAGCTAGGCTACTAGCAACCAGATAAGATGCCCGTAGTCTTTATGGCAG
GCAAAACCACAGGTTTTATGAGGAATATGAATCTGAATCACGTCTGCATA
GTAATTTCTTGTTAAGCAAGTTTTTTGAAGTGGAAATCGTTGGTgtcatt
aaaatttcatttagATAGCAAAGTACACTAGTTCATGAATTAAACATTTT
CTTATGaattttgttgacaaaaattaaattaaactaTTATTGCTTAACTT
GCAATGTCTTTTTCGAGTCTGCACCATTCAATTCCAatacagggggaggg
ggtggaCGATCCTTGTCAAAACCAAATAATATTCTTATACATgcgtggat
accccctggaaaatggcgaaatttgctaaagaacccttggaaaaattatt
ttcataccttaaaagtgAGGTTTGACGAAGTAAAAACtgtattttacccc
ctggaaattttagaatagcCTTTTATCTCCCGGAAAAATACACCtttata
ccccctggaaattcttctcagaTTACTCCCTGGAAATGTTTGTTCAACCC
CCTAAATATAAAATGGTATGACCCAATACGTAATACATTATGGAATTTTA
ATATCGTTTAGAGTAGCCCAGCAATCACCATCGAATTCAGTGTCACCTTT
GGTTTCACCCAAACGACTCAATAAACCGAACGGAAAAGGTACTGGTCACA
ACATCCATCCTTTTTGTTTAAGATATGCATgcttttttttgtaagcatac
AAAATTTCGTAAAACAGACtcggagatgcttaggtcgagggcttgacaag
gctgaaaaatgcgCATAAGGGTGCTTATATCCCAAACAAAATTGTaggga
aattccgaaaatcggTAAAGTCCCAACCAAGataaggaaaataatttttt
tgtaggctcaaggtaatgtttagcatatgcttaaatgTTTGCCATATCTG
ATCctaaatatgcttataagtgcaatgcctTTAATATATATGTATTGTAC
TTACGGAACAATACTAAAGgaacaactttttcaaattagTTGTACATCAG
CACTACCcgattttttttggctttttgacGCTTTTGATTGTTGTGtgaac
ttttgaataaaaatgttttcgaaGTTCTTTCGGGAATATTTATAACAAAT
TTAGAAATTGGGCTATTCATGGTTCGTAAATTCCAAATTCAATTCAACAC
AAGATTTTCGACGACAGCTTCCCGATAGCGATAATAAATTGATAAATCAC
ATTAAGGCACAAGTGGTGCATATGTTTTTTTGAATATGGTCccaaaaaaa
acgaatttttgcaaagatttggacagaaattcttatatTACGACTGTTAA
ATGATCCGTTTTGTTCTCTCAGGTGAAACACTTTTGCACGTGGCTTGTAA
TAAGCGCAAAATTCATCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAG
TTAACACACAAGACAACGCAGGGTGGACGCCCTTACATGAGGCGTGTTGC
TTTGGTAACCACGAAGTTGTGCAAGAACTCATGAAAGCCCCCGGTTAGTC
TTATCAATTGTGAATTATCGCCCTGAATTTCTTGAGAAATATTGTAAAAG
ATCATCTAAAATACAGTTATGCGAGGGACTTAAGTTGCAATCTCACAGTT
TTCATTTGACTTTATTTCGCGAAATAGGCAAATTCCCGCAattaaaatag
tgaaaatagcACGAAAATCACCNTTTCATTTGACTTTATTTCGCGAAATA
GGCAAATTCCCGCAATTAAAATAGTGAATATAGCACGAAAATCACCacaa
aactttttgatattttctagATATTGATTTAACGTTGACACGTGGTAAAA
AGACGCAATGCATTGATGGAACTACCGCATTGCATGATGCTGTAGAGAAT
AATTTCCTTAATATCGCCGAGTTCTTGTTACAAAAAGGAGGTATGTGCAT
AATAGAAAAGGTTAACCAGTCACACCTTCACAGCtgtagcctgtaccaaa
ctcttcttcgctgactgaaaagataacgcgAAGTTAGGTTTGTGACGGTT
ATGCAGCATTTCGTGCCTCagacttttttccaaaaatttctgAATGTCTt
agcctatctctatcccaacacgcgattttttNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGACGTCAC
TAGCGACGAAAAAAGATGGCGGccgaaaacataaacaaagaaggGCGGgt
ggaaaggaaaagaaaaatcttgaatgttGAGACTTATTGCAGAATTTTTT
AATATTGTGAGGTGTGTTGCTGTGTCGATTgtacaaaatgttacaaaaat
taaacacaacaaaaaatgtattgagtgttgtttataaaatttcactgtct
aaaaagtaaaaagcagATAAAGTAACAACCCTACTCTATCAATAAaagca
ttgaaaataaattgctcaaattttttgaaatagaaaatataaaGCTTACC
ACGAAACATAACGGAGGAAtacaagaaattaaaaaaaattttatgcaCCT
AAAACGACAAAAGATTCTTACcactttgtaaaaaaatatgcaaaattccc
ttgaaaaaagtaaaaaagtataaaatatataaatcagaTTTACTTTATTG
ATTTCTGGATTTGTACTTCGCATATATCAAgctgaaaaatgttttgattt
tttcgaaactttcaaataattatttctaTACTCATAGTGGTCTCCGGTAG
ACCTAGAATCCACAAAAGgaaagatagatagatagatagatagatagata
agatagatagataaatatATTTACCGTGATAAAGCTATATGCGATATAAG
ATGTACAGGTCAAGGATAGCTGTTAAAAATAAGtacatgttttcattttt
tgtgttaaaaataaaaatactagctcaatttataaaatatagTAGGATGT
TTATATCAATGTATGTTTGCTCAAAGTATAAATAGTAAACTATATATCCT
ATTGGCTGCTGTGAGTGAAAAGAACGGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCGATTCCCT
GGGTGGTCTAAAGTGTATAACCCGTAAAGCTTTGTTCTGAAGGACTTCAA
TTTTCTCTAGAGAGGCTTGGGTGATATATCCAATGGTTTGAAGACAATAA
CTGACATGAGAGTCAAAAAGTGCATAGTAGACAGAGATGAGTGTTTTGAA
GTCTACGAGATGTCTAAGTTTAGACAGAAATCCAACAGTGCGGGAAAGTT
TTGTAGTAAGGTCATGAATATGAGGATCCCAGGAGAGGTGCTCGTCAAGA
ATGATTCCAAGATACTTAACCTTATTTGTTGGGTGAATTTTCTGTCCACT
GAGTCTGAAATTCAAGTTTTTTGTAACTATGTTTCTGGATGATCTAAACA
GGATCAATTCAGTTTTAGAAGCATTAAGACTAATTTTATTAGCTCGAAGC
CAATGGACTAAGAGGGCAAGATCCCGATTTACTTTCCTGTTaagcttttt
taaagattcgtcGCAGCAAATAAGGCTTGTATCATCTGCAAAGTGAATGG
TTGTAGAGTTTTCTAATGATAAATGCAGGTCATTTATATAAATTATAAAT
AGGAGAGGGCCCAGAACTGAGCCCTGGGGGACACCGTGACTGACTGGTAT
GTATTTTAAAAAAGAGTTCCTTATCTCGACGCATTGAGATCTGTTGGTGA
GGTATGATCTAAGTATTCTAAGAGTAGGACCTCTAATGCCGTAGTGATCA
AGTTTGCTGAGAAGTATGTCATGTTCCACAGTGTCAAAGGCTTTTTGTAG
GTCGATGAAAACTCCAGCAGCAAACTGTCCAGTGTCCAGGGCTTTTCTTA
CTAGTTCGGTTAGAGCAATCACAGCATGATTTGTGCTGTGACCTTTCCTA
AAGCCAAATTGTTTGGTAGTGATAGTATTAGTATCCTCAAAGAAACGGAC
TAGTCTATAGTgtataagtttttcaaaaattttgtttatgtttgacaGTA
AGGAGATTGGTCTGTAGTTGCCTACTTTTAGTTTAGATTCTTTCTTGTGC
AACGGTTTAACCGTTGCTTTTTTCAGACATTCAGGGTAGATGCCATTTCT
AATACAGTCATTGAAAATGTGAGCTAGGACAGTGCTTGCTGTTGGAGCTA
TCAACTTCAAAAAGGAAGTGGGAATACTTGAAGGGCCTGAAGCTTTGTCA
GTAGCAAGTTCATTGATGAGTTTTAGGACTGCGGTAGAcgtaattttatt
aaaatacatGGAGTTGAGAGCCTGATCACCTAGAAAGTCagtaaagtttt
tgtttgttggaGGAAttagttgttttgttttttcagcaATTGACCCGTAA
AAATCATTGAATGCTTCAGCCATTTCTTTGTCGTtagtaatttgaaattt
gttatGTAGGATAAGTTTAGGGGAAAGGTCTGTGTTTGATTTAATACCAA
TGATCTCATTTACAGCCTTCCATTTTAGTTTCAAGTCGAGTCTATTCTCA
GAGAAGAAGTTTTTATAGTAATtgtttttgctcaattttaGGAGTTTGGA
GAGCAGATTTCtgtgttttttaaagttttcatgcttttgtttttttagtt
gAGTGTTTTTAGCCTTCatgaattttttatataatttgttttttgtgGAA
ATGGATTTAAGAAGTCCTTTTGTGATCCAAGGATTTTTTGGGATGTGGGC
CTTTTTCCAGGTAGTTTTTATTGGAGCATGAGTATCAATTATTGAGTTGG
TTTTGTCAATGAAGGTTTTTATtcagggttcagacagaccttcgaaaata
aaattccctgagtttccctgaattttaatcaattttcaaaggttttttcc
ctgagaaattcctcattttaactactttttccctgagtatcaagcaaacc
ataaaaactaagcagagtcaaaagagatgtatctttaaataaaaggcaca
caaatcaaatggtaaacctaaggtaaaaattaaagctacaaatactgcat
atgaataaacactttaaaactaaaaaaacttttaaatctgttttttNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaaaaaaacttttaaatctgttttttccattcattcttcaaaaaa
taaaattccctgagtttccctgagcaGACTGGGAAAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggaaaaattttttt
ttccctgggtttccctgagtttccctgatttttctgaaaatttatcatat
ttccaggttttccagggtctgtctgaaccctgtTATTTTTTCAGACGGAG
GTTTGCCGCGTAGAGAGTCAGCCCAGTCTATAGAGAGAAAATCCATGAGG
AAATGTATCTTTTAAAGGTCTCCTATCTCGAGGATTATTctgttaaaaat
aaaataatctagGGACTATCAGCCACATTTCCTcatgatttcatcaaaat
tatttgGTGGACCTCTCGAATAATTCTGCTTGCCTGGTTATTACACCACC
ACGTAACATTCTGTATGTCCACTGTctaaatagaaatagaaatgtccACG
ATAGAAACGATCTGACAAGTGATTAAAAACAATGTTACTCGAATCTttcg
aaatgaaaaaagagtgcttTATTTTGGTAACACAAAAACAAGGAGCCTAA
GTATGTACTCCTGTACTTCCAAGTTTGTTCGACTCGGGGATGATCCACGG
AGCAATCTCAAATCCAACCACTATCATTCCAGCATACAGATCCCATACAG
ATATGTTTGATTAATTTGTGTGTCTCACCACACCACTGTCCATTCTTCGA
CAAATTCATAAAACCATTCGTCAATCTTTGCCCATTTTACCAAAATAAAG
TCTTTATGTAACAAAAATAATCCAACATAAGCAGTGCTCCAGAGAAAGTT
TCTTGTAGTCATCTCCCTGCTCTTTCCCTTTATAAATTCGTATCTATTAA
TTTCTGGATAATTCTAGACAACTACATAGTGACTAGCCAttccaaaaact
ttttgaagagtgactcttcaaagttcaaagcacaaaataaataaaaacac
aacATTCTGCAACATTTCGAACTCTCTTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNctttgtttacaaaaacacTCCTTCGCGGTGACAAATTTTATTG
GTAGAGTTTTTGCTGCAGTCAAAAGCTACGGTCCTTTGGCTTGAAGCCGA
GGATTTTGAATAAATGTAAAAAGTTACAGACGGaacggtgtcgaggaaaa
agccgtggtcgtctggtacaggctatGAATGTCTCTGCGGTGAAGCGTGT
AACTATTTTCAGCATtcttactctaggggctgagttaggtcccgtatgca
catcggcgtatagtcattttttcttttgatcatgaaagtatagtccttga
agagtcagaaaacgtgtgtggcgttatttggatcaggctcaaatttccat
aatgacggattttagatttcaaccctttttagccatcttgcttgaaaaaa
attttttttttaactttaaacatagacatattatataccaatcgattaCA
AATGTTATGCCAattaagaaaaatgtcagaacGATGATtagaaaatttcg
ttatctggagatatgaagcactttcgattttgattttttgaaatgactac
ttttggttccaaatttgcggggctgtaacatttgattagCTTACttgatt
tatttgaaattttcggagggtctttcctaccgttcaaataataaaattca
ggaaaatttatttttctacatgaatttcgaaatccataatggcggattca
aaattttctttcgtcacatgagctcttaggctctgctagcctaagaaaaa
tattttttgagcttaaaaccctgcatataatataacacacacaaactttt
ctactcaatcgcatgttcaaactcgatactttaattagggacaccctgta
tagcaaaagaaattcttgacgtaatgatattaaattggttcttgtaaact
GTCAGAAGtggagtaaaatcaagatgaacttataattttctcgagctcta
gctttccatattatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
ctcgacataaactcccttaagggcaagagacctggtatatgacgagccgt
ttttccattgttttcaaaaagctgtttttccatctctttacattcctctg
aatatactgttctttggaagagactaaaaatggctaggtcgtaaaaaagg
tgtcacggaaccccaggcttggccctcTACTAAATAAAAGAcgcataata
ttttgcttggccggcattgagtaacttTGTCCACTGATATATAAATGTCA
TTGGGACCAACTGAGACACAGAATCTCGCttactttcaaaatattaaaat
agcCCGTGGTGGGCGGGCTGGTACAGGCCACCACAGCTgagacatttgaa
aacttgtggaTGACGGGAATTCCGTTTTCACAACCTATAAAAACCACGCA
AATCTTTAGTTGAAATTTAATCTAAGTGCGTGGCAATCTTTCATTGGCTG
CACTTCATTCATCATCATAAATGCAGAAACGATAAAAAGTGACAttttaa
aggcttggggacacgagaaatGTTTTTCGCGTTGGAACAATGGAACATGC
TCCATTTAATAGTCGTAGATACATCATTATGTATCTGATTCACCTTTTTA
TCTGTTGAATGTTTATGCCGTCTCTTACCAAGCcgtcttaaaattttctt
tcgttttgTCTACAGGTCGAGACCTACTTCATTTGAGAAGAGCTGATGGG
AAGACACCACTTGATATTTGCCGAGAACCGTCGGCGATGAAaaccttgtt
gaaaagatatgagAATGTGGAGTCATCTTCTGACTATACTAACGTCTCAA
TTGTTGCAAATCAACAGGTTGCTGTGAGTAGCATAAATAAAGAAATGTAC
CAGAGTTTCGTTTCACCTGAACCTCAGAATATGGAATTCTTTTTACAAAT
ACTTTTGCAACTTATTACCAGTTACCGGGAATCGAACATAGACGGCTTAA
GATGCAATTTGAGCCAACTTGAAGCANATATGGAATTCTTTTTACAAATA
CTTTTGCAACTTATTACCAATTACCGGGACTCGAACATAGACGGCTTAAG
ATGCAATTCGAGCCAACTTGAAGCCCAATACAATGATTTATTGATGCATG
TCAAATTACTGAATGGGGATAAGATACCCCTCAAATGCAAACTGACTTTG
AAACAAATTAAACGCGTTTTGTTTAGCTAAGAGAGAAGTATTACATATGA
TTTTGTTACTGAAGGGTTTTATTCATTCATATTTCAGAGGTCAATACGGG
GATTTGTTAACAGCAGTTTGACAATTATTGTAATGCTCGTctcttttagt
tttttaaagagGAATTTTCACTCTTTTATATACGCCATATCGACCTACAG
TTTATGAAATTAGATGCTACGACCCAAAGACTATGGAGTCGATTCATTAC
TATGTAGTCAGATTACTCTGACGTCTTTTATTCAACCCAAGGAAATTTTT
TCTGTCATAATGGTAGGtattcttcattcttctgtCTGCCTCTCTCATCA
CCCCCCCCTCCGTCCATTCTCTTTTTCACCCTTCCCCCTTTTTCTCCGAC
GTGAAGAGATGTTTATACggtcttaaaggttttgtttttaaatagagTGA
TATCGGTTGCTTactcacaagctttttcatattggattgacacagatgtg
gagaaagattggtcagaaagaggaaaatgaaaatatttttttgcttatat
cagcatgatATAACAAGAGGCAGACACATGTCCTGGTATGataatgtgtc
tgatatgaaacgggaacgcttatataaaaacaaaacctttaagatatTAG
CTTTAAATATAGTAGTGATATCAGTGATAAAGGCAACGGCTTAACCGATA
GATATTTAAAGGTAACAGACCTTTCatgaattattttgagtgcaacgact
gcctcgttttgaaaccatggTGAGACTTCAAGTGTTGCTTTTTAAATAGA
GTGAATTTCGAGGTAAGGATTGTTCATGCCTTAATACAAGAAAAGGTGTA
cataagaaatatttgaaagcAAACCTGATTAAATTAGGTCGGAAATTTTC
ATTAGATATTGAAGATTCTTTGTGTAAGTTTTTTCACTGTATACATTTTT
GAGTGATTTTCAATCCATCAAAGTTTTTATGGGAATTGGACTTGAGGTGG
GGTCATGGTATGATTTATGAGATATATTTATTGTAGTGGTATttacaggg
ggggggtcagtagtaaaatctcagacataatgacgtttactacggtggtg
gtgtgacaaaaaatctaaaaaattttttactacctagggtagttaaatac
taaaataggtggtatctatgtgttaaatgttgaaaaaattttactacctg
ggtagttaaaactggtaaaattagc

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016121	XLOC_016121	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000681	supercontig	sc0000681:2617..13191 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.2531	2.74882	0.258761	0.75487	6.99624	4.65094	4.53851	5.25823	2.75949	3.09418	4.28056	2.55568	2.7407	4.51021	1.70236	2.51824	2.76829	3.28787	1.98055	1.8833	4.33606	5.16578	4.94471	5.77236	4.75527	5.01469	0.90362	0.930725	3.27437	4.31001

Blast

[Close]

BLAST of TCONS_00028451 vs. Swiss-Prot (Human)
Match: SLF1 (SMC5-SMC6 complex localization factor protein 1 OS=Homo sapiens GN=SLF1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.907e-24
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = 1

Query:  157 LNKPNGKGETLLHVACNKRKIHRIKALIEM-GAKVNTQDNAGWTPLHEACCFGNHEVVQELM-KAPDIDLTLTRGKKTQCIDGTTALHDAVENNFLNIAEFLLQKGGRDLLHLRRADGKTPLDICREPSAMKTLL 555
             +K N KGET LH AC   ++ ++  L+ + G  +N +DNAGWTPLHEAC +GN   VQE++ + P++DL LT+      +DG T LHDA+ N  + I + LLQ GG  LL  R A G+ PLD    P   + L 
Sbjct:  800 FHKTNLKGETALHRACINNQVEKLILLLSLPGIDINVKDNAGWTPLHEACNYGNTVCVQEILQRCPEVDL-LTQ------VDGVTPLHDALSNGHVEIGKLLLQHGGPVLLQQRNAKGELPLDYVVSPQIKEELF 927

The following BLAST results are available for this feature:

BLAST of TCONS_00028451 vs. Swiss-Prot (Human)

BLAST of TCONS_00028451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SLF1	3.907e-24	43.70	SMC5-SMC6 complex localization factor protein 1 OS...	[more]

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TCONS_00028451 (transcript) - C. hemisphaerica