TCONS_00028450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028450
Unique NameTCONS_00028450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028450 ID=TCONS_00028450|Name=TCONS_00028450|organism=Clytia hemisphaerica|type=transcript|length=1652bp
CGTTCGTTTTAGATATTATATTACTTTTACATGTATCCTGGAAGAGCTGT
TCGGAAGGAACACCCACAATTACGCACGCCCGTCAAAGACCTTCAAACCA
GAGTAGCCCAGCAATCACCATCGAATTCAGTGTCACCTTTGGTTTCACCC
AAACGACTCAATAAACCGAACGGAAAAGGTGAAACACTTTTGCACGTGGC
TTGTAATAAGCGCAAAATTCATCGAATCAAAGCGCTCATCGAAATGGGTG
CTAAAGTTAACACACAAGACAACGCAGGGTGGACGCCCTTACATGAGGCG
TGTTGCTTTGGTAACCACGAAGTTGTGCAAGAACTCATGAAAGCCCCCGA
TATTGATTTAACGTTGACACGTGGTAAAAAGACGCAATGCATTGATGGAA
CTACCGCATTGCATGATGCTGTAGAGAATAATTTCCTTAATATCGCCGAG
TTCTTGTTACAAAAAGGAGGTCGAGACCTACTTCATTTGAGAAGAGCTGA
TGGGAAGACACCACTTGATATTTGCCGAGAACCGTCGGCGATGAAaacct
tgttgaaaagatatgagAATGTGGAGTCATCTTCTGACTATACTAACGTC
TCAATTGTTGCAAATCAACAGGTTGCTTTTATGAAATTAGATGCTACGAC
CCAAAGACTATGGAGTCGATTCATTACTATGTAGTCAGATTACTCTGACG
TCTTTTATTCAACCCAAGGAAATTTTTTCTGTCATAATGGTAGGtattct
tcattcttctgtCTGCCTCTCTCATCACCCCCCCCTCCGTCCATTCTCTT
TTTCACCCTTCCCCCTTTTTCTCCGACGTGAAGAGATGTTTATACggtct
taaaggttttgtttttaaatagagTGATATCGGTTGCTTactcacaagct
ttttcatattggattgacacagatgtggagaaagattggtcagaaagagg
aaaatgaaaatatttttttgcttatatcagcatgatATAACAAGAGGCAG
ACACATGTCCTGGTATGataatgtgtctgatatgaaacgggaacgcttat
ataaaaacaaaacctttaagatatTAGCTTTAAATATAGTAGTGATATCA
GTGATAAAGGCAACGGCTTAACCGATAGATATTTAAAGGTAACAGACCTT
TCatgaattattttgagtgcaacgactgcctcgttttgaaaccatggTGA
GACTTCAAGTGTTGCTTTTTAAATAGAGTGAATTTCGAGGTAAGGATTGT
TCATGCCTTAATACAAGAAAAGGTGTAcataagaaatatttgaaagcAAA
CCTGATTAAATTAGGTCGGAAATTTTCATTAGATATTGAAGATTCTTTGT
GTAAGTTTTTTCACTGTATACATTTTTGAGTGATTTTCAATCCATCAAAG
TTTTTATGGGAATTGGACTTGAGGTGGGGTCATGGTATGATTTATGAGAT
ATATTTATTGTAGTGGTATttacagggggggggtcagtagtaaaatctca
gacataatgacgtttactacggtggtggtgtgacaaaaaatctaaaaaat
tttttactacctagggtagttaaatactaaaataggtggtatctatgtgt
taaatgttgaaaaaattttactacctgggtagttaaaactggtaaaatta
gc
Run BLAST on NCBI

protein sequence of TCONS_00028450-protein

>TCONS_00028450-protein ID=TCONS_00028450-protein|Name=TCONS_00028450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MYPGRAVRKEHPQLRTPVKDLQTRVAQQSPSNSVSPLVSPKRLNKPNGKG
ETLLHVACNKRKIHRIKALIEMGAKVNTQDNAGWTPLHEACCFGNHEVVQ
ELMKAPDIDLTLTRGKKTQCIDGTTALHDAVENNFLNIAEFLLQKGGRDL
LHLRRADGKTPLDICREPSAMKTLLKRYENVESSSDYTNVSIVANQQVAF
MKLDATTQRLWSRFITM
Run BLAST on NCBI

transcript from alignment at sc0000681:2617..13191+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028450 ID=TCONS_00028450|Name=TCONS_00028450|organism=Clytia hemisphaerica|type=transcript|length=10575bp|location=Sequence derived from alignment at sc0000681:2617..13191+ (Clytia hemisphaerica)
CGTTCGTTTTAGATATTATATTACTTTTACATGTATCCTGGAAGAGCTGT
TCGGAAGGAACACCCACAATTACGCACGCCCGTCAAAGACCTTCAAACCA
GGTTTGTATTGCCAGCCATCTTACGTCTTTTCGTGTCATTGTACAGTATA
CAAAATTTATAAGCTTGATAGAGTGAACttatatctttaaaaaaagtcaa
taaGCGGGGACCCTTATAACCGGTATAACCTTACCTATAACCGGTTCTAG
TCTGAATGACAGACAAAACTGCATCACCACGGACCCGATAGAGGATATCA
GAAGCTAGGCTACTAGCAACCAGATAAGATGCCCGTAGTCTTTATGGCAG
GCAAAACCACAGGTTTTATGAGGAATATGAATCTGAATCACGTCTGCATA
GTAATTTCTTGTTAAGCAAGTTTTTTGAAGTGGAAATCGTTGGTgtcatt
aaaatttcatttagATAGCAAAGTACACTAGTTCATGAATTAAACATTTT
CTTATGaattttgttgacaaaaattaaattaaactaTTATTGCTTAACTT
GCAATGTCTTTTTCGAGTCTGCACCATTCAATTCCAatacagggggaggg
ggtggaCGATCCTTGTCAAAACCAAATAATATTCTTATACATgcgtggat
accccctggaaaatggcgaaatttgctaaagaacccttggaaaaattatt
ttcataccttaaaagtgAGGTTTGACGAAGTAAAAACtgtattttacccc
ctggaaattttagaatagcCTTTTATCTCCCGGAAAAATACACCtttata
ccccctggaaattcttctcagaTTACTCCCTGGAAATGTTTGTTCAACCC
CCTAAATATAAAATGGTATGACCCAATACGTAATACATTATGGAATTTTA
ATATCGTTTAGAGTAGCCCAGCAATCACCATCGAATTCAGTGTCACCTTT
GGTTTCACCCAAACGACTCAATAAACCGAACGGAAAAGGTACTGGTCACA
ACATCCATCCTTTTTGTTTAAGATATGCATgcttttttttgtaagcatac
AAAATTTCGTAAAACAGACtcggagatgcttaggtcgagggcttgacaag
gctgaaaaatgcgCATAAGGGTGCTTATATCCCAAACAAAATTGTaggga
aattccgaaaatcggTAAAGTCCCAACCAAGataaggaaaataatttttt
tgtaggctcaaggtaatgtttagcatatgcttaaatgTTTGCCATATCTG
ATCctaaatatgcttataagtgcaatgcctTTAATATATATGTATTGTAC
TTACGGAACAATACTAAAGgaacaactttttcaaattagTTGTACATCAG
CACTACCcgattttttttggctttttgacGCTTTTGATTGTTGTGtgaac
ttttgaataaaaatgttttcgaaGTTCTTTCGGGAATATTTATAACAAAT
TTAGAAATTGGGCTATTCATGGTTCGTAAATTCCAAATTCAATTCAACAC
AAGATTTTCGACGACAGCTTCCCGATAGCGATAATAAATTGATAAATCAC
ATTAAGGCACAAGTGGTGCATATGTTTTTTTGAATATGGTCccaaaaaaa
acgaatttttgcaaagatttggacagaaattcttatatTACGACTGTTAA
ATGATCCGTTTTGTTCTCTCAGGTGAAACACTTTTGCACGTGGCTTGTAA
TAAGCGCAAAATTCATCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAG
TTAACACACAAGACAACGCAGGGTGGACGCCCTTACATGAGGCGTGTTGC
TTTGGTAACCACGAAGTTGTGCAAGAACTCATGAAAGCCCCCGGTTAGTC
TTATCAATTGTGAATTATCGCCCTGAATTTCTTGAGAAATATTGTAAAAG
ATCATCTAAAATACAGTTATGCGAGGGACTTAAGTTGCAATCTCACAGTT
TTCATTTGACTTTATTTCGCGAAATAGGCAAATTCCCGCAattaaaatag
tgaaaatagcACGAAAATCACCNTTTCATTTGACTTTATTTCGCGAAATA
GGCAAATTCCCGCAATTAAAATAGTGAATATAGCACGAAAATCACCacaa
aactttttgatattttctagATATTGATTTAACGTTGACACGTGGTAAAA
AGACGCAATGCATTGATGGAACTACCGCATTGCATGATGCTGTAGAGAAT
AATTTCCTTAATATCGCCGAGTTCTTGTTACAAAAAGGAGGTATGTGCAT
AATAGAAAAGGTTAACCAGTCACACCTTCACAGCtgtagcctgtaccaaa
ctcttcttcgctgactgaaaagataacgcgAAGTTAGGTTTGTGACGGTT
ATGCAGCATTTCGTGCCTCagacttttttccaaaaatttctgAATGTCTt
agcctatctctatcccaacacgcgattttttNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGACGTCAC
TAGCGACGAAAAAAGATGGCGGccgaaaacataaacaaagaaggGCGGgt
ggaaaggaaaagaaaaatcttgaatgttGAGACTTATTGCAGAATTTTTT
AATATTGTGAGGTGTGTTGCTGTGTCGATTgtacaaaatgttacaaaaat
taaacacaacaaaaaatgtattgagtgttgtttataaaatttcactgtct
aaaaagtaaaaagcagATAAAGTAACAACCCTACTCTATCAATAAaagca
ttgaaaataaattgctcaaattttttgaaatagaaaatataaaGCTTACC
ACGAAACATAACGGAGGAAtacaagaaattaaaaaaaattttatgcaCCT
AAAACGACAAAAGATTCTTACcactttgtaaaaaaatatgcaaaattccc
ttgaaaaaagtaaaaaagtataaaatatataaatcagaTTTACTTTATTG
ATTTCTGGATTTGTACTTCGCATATATCAAgctgaaaaatgttttgattt
tttcgaaactttcaaataattatttctaTACTCATAGTGGTCTCCGGTAG
ACCTAGAATCCACAAAAGgaaagatagatagatagatagatagatagata
agatagatagataaatatATTTACCGTGATAAAGCTATATGCGATATAAG
ATGTACAGGTCAAGGATAGCTGTTAAAAATAAGtacatgttttcattttt
tgtgttaaaaataaaaatactagctcaatttataaaatatagTAGGATGT
TTATATCAATGTATGTTTGCTCAAAGTATAAATAGTAAACTATATATCCT
ATTGGCTGCTGTGAGTGAAAAGAACGGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCGATTCCCT
GGGTGGTCTAAAGTGTATAACCCGTAAAGCTTTGTTCTGAAGGACTTCAA
TTTTCTCTAGAGAGGCTTGGGTGATATATCCAATGGTTTGAAGACAATAA
CTGACATGAGAGTCAAAAAGTGCATAGTAGACAGAGATGAGTGTTTTGAA
GTCTACGAGATGTCTAAGTTTAGACAGAAATCCAACAGTGCGGGAAAGTT
TTGTAGTAAGGTCATGAATATGAGGATCCCAGGAGAGGTGCTCGTCAAGA
ATGATTCCAAGATACTTAACCTTATTTGTTGGGTGAATTTTCTGTCCACT
GAGTCTGAAATTCAAGTTTTTTGTAACTATGTTTCTGGATGATCTAAACA
GGATCAATTCAGTTTTAGAAGCATTAAGACTAATTTTATTAGCTCGAAGC
CAATGGACTAAGAGGGCAAGATCCCGATTTACTTTCCTGTTaagcttttt
taaagattcgtcGCAGCAAATAAGGCTTGTATCATCTGCAAAGTGAATGG
TTGTAGAGTTTTCTAATGATAAATGCAGGTCATTTATATAAATTATAAAT
AGGAGAGGGCCCAGAACTGAGCCCTGGGGGACACCGTGACTGACTGGTAT
GTATTTTAAAAAAGAGTTCCTTATCTCGACGCATTGAGATCTGTTGGTGA
GGTATGATCTAAGTATTCTAAGAGTAGGACCTCTAATGCCGTAGTGATCA
AGTTTGCTGAGAAGTATGTCATGTTCCACAGTGTCAAAGGCTTTTTGTAG
GTCGATGAAAACTCCAGCAGCAAACTGTCCAGTGTCCAGGGCTTTTCTTA
CTAGTTCGGTTAGAGCAATCACAGCATGATTTGTGCTGTGACCTTTCCTA
AAGCCAAATTGTTTGGTAGTGATAGTATTAGTATCCTCAAAGAAACGGAC
TAGTCTATAGTgtataagtttttcaaaaattttgtttatgtttgacaGTA
AGGAGATTGGTCTGTAGTTGCCTACTTTTAGTTTAGATTCTTTCTTGTGC
AACGGTTTAACCGTTGCTTTTTTCAGACATTCAGGGTAGATGCCATTTCT
AATACAGTCATTGAAAATGTGAGCTAGGACAGTGCTTGCTGTTGGAGCTA
TCAACTTCAAAAAGGAAGTGGGAATACTTGAAGGGCCTGAAGCTTTGTCA
GTAGCAAGTTCATTGATGAGTTTTAGGACTGCGGTAGAcgtaattttatt
aaaatacatGGAGTTGAGAGCCTGATCACCTAGAAAGTCagtaaagtttt
tgtttgttggaGGAAttagttgttttgttttttcagcaATTGACCCGTAA
AAATCATTGAATGCTTCAGCCATTTCTTTGTCGTtagtaatttgaaattt
gttatGTAGGATAAGTTTAGGGGAAAGGTCTGTGTTTGATTTAATACCAA
TGATCTCATTTACAGCCTTCCATTTTAGTTTCAAGTCGAGTCTATTCTCA
GAGAAGAAGTTTTTATAGTAATtgtttttgctcaattttaGGAGTTTGGA
GAGCAGATTTCtgtgttttttaaagttttcatgcttttgtttttttagtt
gAGTGTTTTTAGCCTTCatgaattttttatataatttgttttttgtgGAA
ATGGATTTAAGAAGTCCTTTTGTGATCCAAGGATTTTTTGGGATGTGGGC
CTTTTTCCAGGTAGTTTTTATTGGAGCATGAGTATCAATTATTGAGTTGG
TTTTGTCAATGAAGGTTTTTATtcagggttcagacagaccttcgaaaata
aaattccctgagtttccctgaattttaatcaattttcaaaggttttttcc
ctgagaaattcctcattttaactactttttccctgagtatcaagcaaacc
ataaaaactaagcagagtcaaaagagatgtatctttaaataaaaggcaca
caaatcaaatggtaaacctaaggtaaaaattaaagctacaaatactgcat
atgaataaacactttaaaactaaaaaaacttttaaatctgttttttNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaaaaaaacttttaaatctgttttttccattcattcttcaaaaaa
taaaattccctgagtttccctgagcaGACTGGGAAAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggaaaaattttttt
ttccctgggtttccctgagtttccctgatttttctgaaaatttatcatat
ttccaggttttccagggtctgtctgaaccctgtTATTTTTTCAGACGGAG
GTTTGCCGCGTAGAGAGTCAGCCCAGTCTATAGAGAGAAAATCCATGAGG
AAATGTATCTTTTAAAGGTCTCCTATCTCGAGGATTATTctgttaaaaat
aaaataatctagGGACTATCAGCCACATTTCCTcatgatttcatcaaaat
tatttgGTGGACCTCTCGAATAATTCTGCTTGCCTGGTTATTACACCACC
ACGTAACATTCTGTATGTCCACTGTctaaatagaaatagaaatgtccACG
ATAGAAACGATCTGACAAGTGATTAAAAACAATGTTACTCGAATCTttcg
aaatgaaaaaagagtgcttTATTTTGGTAACACAAAAACAAGGAGCCTAA
GTATGTACTCCTGTACTTCCAAGTTTGTTCGACTCGGGGATGATCCACGG
AGCAATCTCAAATCCAACCACTATCATTCCAGCATACAGATCCCATACAG
ATATGTTTGATTAATTTGTGTGTCTCACCACACCACTGTCCATTCTTCGA
CAAATTCATAAAACCATTCGTCAATCTTTGCCCATTTTACCAAAATAAAG
TCTTTATGTAACAAAAATAATCCAACATAAGCAGTGCTCCAGAGAAAGTT
TCTTGTAGTCATCTCCCTGCTCTTTCCCTTTATAAATTCGTATCTATTAA
TTTCTGGATAATTCTAGACAACTACATAGTGACTAGCCAttccaaaaact
ttttgaagagtgactcttcaaagttcaaagcacaaaataaataaaaacac
aacATTCTGCAACATTTCGAACTCTCTTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNctttgtttacaaaaacacTCCTTCGCGGTGACAAATTTTATTG
GTAGAGTTTTTGCTGCAGTCAAAAGCTACGGTCCTTTGGCTTGAAGCCGA
GGATTTTGAATAAATGTAAAAAGTTACAGACGGaacggtgtcgaggaaaa
agccgtggtcgtctggtacaggctatGAATGTCTCTGCGGTGAAGCGTGT
AACTATTTTCAGCATtcttactctaggggctgagttaggtcccgtatgca
catcggcgtatagtcattttttcttttgatcatgaaagtatagtccttga
agagtcagaaaacgtgtgtggcgttatttggatcaggctcaaatttccat
aatgacggattttagatttcaaccctttttagccatcttgcttgaaaaaa
attttttttttaactttaaacatagacatattatataccaatcgattaCA
AATGTTATGCCAattaagaaaaatgtcagaacGATGATtagaaaatttcg
ttatctggagatatgaagcactttcgattttgattttttgaaatgactac
ttttggttccaaatttgcggggctgtaacatttgattagCTTACttgatt
tatttgaaattttcggagggtctttcctaccgttcaaataataaaattca
ggaaaatttatttttctacatgaatttcgaaatccataatggcggattca
aaattttctttcgtcacatgagctcttaggctctgctagcctaagaaaaa
tattttttgagcttaaaaccctgcatataatataacacacacaaactttt
ctactcaatcgcatgttcaaactcgatactttaattagggacaccctgta
tagcaaaagaaattcttgacgtaatgatattaaattggttcttgtaaact
GTCAGAAGtggagtaaaatcaagatgaacttataattttctcgagctcta
gctttccatattatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
ctcgacataaactcccttaagggcaagagacctggtatatgacgagccgt
ttttccattgttttcaaaaagctgtttttccatctctttacattcctctg
aatatactgttctttggaagagactaaaaatggctaggtcgtaaaaaagg
tgtcacggaaccccaggcttggccctcTACTAAATAAAAGAcgcataata
ttttgcttggccggcattgagtaacttTGTCCACTGATATATAAATGTCA
TTGGGACCAACTGAGACACAGAATCTCGCttactttcaaaatattaaaat
agcCCGTGGTGGGCGGGCTGGTACAGGCCACCACAGCTgagacatttgaa
aacttgtggaTGACGGGAATTCCGTTTTCACAACCTATAAAAACCACGCA
AATCTTTAGTTGAAATTTAATCTAAGTGCGTGGCAATCTTTCATTGGCTG
CACTTCATTCATCATCATAAATGCAGAAACGATAAAAAGTGACAttttaa
aggcttggggacacgagaaatGTTTTTCGCGTTGGAACAATGGAACATGC
TCCATTTAATAGTCGTAGATACATCATTATGTATCTGATTCACCTTTTTA
TCTGTTGAATGTTTATGCCGTCTCTTACCAAGCcgtcttaaaattttctt
tcgttttgTCTACAGGTCGAGACCTACTTCATTTGAGAAGAGCTGATGGG
AAGACACCACTTGATATTTGCCGAGAACCGTCGGCGATGAAaaccttgtt
gaaaagatatgagAATGTGGAGTCATCTTCTGACTATACTAACGTCTCAA
TTGTTGCAAATCAACAGGTTGCTGTGAGTAGCATAAATAAAGAAATGTAC
CAGAGTTTCGTTTCACCTGAACCTCAGAATATGGAATTCTTTTTACAAAT
ACTTTTGCAACTTATTACCAGTTACCGGGAATCGAACATAGACGGCTTAA
GATGCAATTTGAGCCAACTTGAAGCANATATGGAATTCTTTTTACAAATA
CTTTTGCAACTTATTACCAATTACCGGGACTCGAACATAGACGGCTTAAG
ATGCAATTCGAGCCAACTTGAAGCCCAATACAATGATTTATTGATGCATG
TCAAATTACTGAATGGGGATAAGATACCCCTCAAATGCAAACTGACTTTG
AAACAAATTAAACGCGTTTTGTTTAGCTAAGAGAGAAGTATTACATATGA
TTTTGTTACTGAAGGGTTTTATTCATTCATATTTCAGAGGTCAATACGGG
GATTTGTTAACAGCAGTTTGACAATTATTGTAATGCTCGTctcttttagt
tttttaaagagGAATTTTCACTCTTTTATATACGCCATATCGACCTACAG
TTTATGAAATTAGATGCTACGACCCAAAGACTATGGAGTCGATTCATTAC
TATGTAGTCAGATTACTCTGACGTCTTTTATTCAACCCAAGGAAATTTTT
TCTGTCATAATGGTAGGtattcttcattcttctgtCTGCCTCTCTCATCA
CCCCCCCCTCCGTCCATTCTCTTTTTCACCCTTCCCCCTTTTTCTCCGAC
GTGAAGAGATGTTTATACggtcttaaaggttttgtttttaaatagagTGA
TATCGGTTGCTTactcacaagctttttcatattggattgacacagatgtg
gagaaagattggtcagaaagaggaaaatgaaaatatttttttgcttatat
cagcatgatATAACAAGAGGCAGACACATGTCCTGGTATGataatgtgtc
tgatatgaaacgggaacgcttatataaaaacaaaacctttaagatatTAG
CTTTAAATATAGTAGTGATATCAGTGATAAAGGCAACGGCTTAACCGATA
GATATTTAAAGGTAACAGACCTTTCatgaattattttgagtgcaacgact
gcctcgttttgaaaccatggTGAGACTTCAAGTGTTGCTTTTTAAATAGA
GTGAATTTCGAGGTAAGGATTGTTCATGCCTTAATACAAGAAAAGGTGTA
cataagaaatatttgaaagcAAACCTGATTAAATTAGGTCGGAAATTTTC
ATTAGATATTGAAGATTCTTTGTGTAAGTTTTTTCACTGTATACATTTTT
GAGTGATTTTCAATCCATCAAAGTTTTTATGGGAATTGGACTTGAGGTGG
GGTCATGGTATGATTTATGAGATATATTTATTGTAGTGGTATttacaggg
ggggggtcagtagtaaaatctcagacataatgacgtttactacggtggtg
gtgtgacaaaaaatctaaaaaattttttactacctagggtagttaaatac
taaaataggtggtatctatgtgttaaatgttgaaaaaattttactacctg
ggtagttaaaactggtaaaattagc

Coding sequence (CDS) from alignment at sc0000681:2617..13191+

>TCONS_00028450 ID=TCONS_00028450|Name=TCONS_00028450|organism=Clytia hemisphaerica|type=CDS|length=3924bp|location=Sequence derived from alignment at sc0000681:2617..13191+ (Clytia hemisphaerica)
ATGTATCCTGGAAGAGCTGTTCGGAAGGAACACCCACAATTACGCACGCC
CGTCAAAGACCTTCAAACCAGAGTAGCCCAGCAATCACCATCGAATTCAG
TGTCACCTTTGGTTTCACCCAAACGACTCAATAAACCGAACGGAAAAGGT
GAAACACTTTTGCACGTGGCTTGTAATAAGCGCAAAATTCATCGAATCAA
AGCGCTCATCGAAATGGGTGCTAAAGTTAACACACAAGACAACGCAGGGT
GGACGCCCTTACATGAGGCGTGTTGCTTTGGTAACCACGAAGTTGTGCAA
GAACTCATGAAAGCCCCCGATATTGATTTAACGTTGACACGTGGTAAAAA
GACGCAATGCATTGATGGAACTACCGCATTGCATGATGCTGTAGAGAATA
ATTTCCTTAATATCGCCGAGTTCTTGTTACAAAAAGGAGGTCGAGACCTA
CTTCATTTGAGAAGAGCTGATGGGAAGACACCACTTGATATTTGCCGAGA
ACCGTCGGCGATGAAaaccttgttgaaaagatatgagAATGTGGAGTCAT
CTTCTGACTATACTAACGTCTCAATTGTTGCAAATCAACAGGTTGCTTTT
ATGAAATTAGATGCTACGACCCAAAGACTATGGAGTCGATTCATTACTAT
GTAGATGTATCCTGGAAGAGCTGTTCGGAAGGAACACCCACAATTACGCA
CGCCCGTCAAAGACCTTCAAACCAGAGTAGCCCAGCAATCACCATCGAAT
TCAGTGTCACCTTTGGTTTCACCCAAACGACTCAATAAACCGAACGGAAA
AGGTGAAACACTTTTGCACGTGGCTTGTAATAAGCGCAAAATTCATCGAA
TCAAAGCGCTCATCGAAATGGGTGCTAAAGTTAACACACAAGACAACGCA
GGGTGGACGCCCTTACATGAGGCGTGTTGCTTTGGTAACCACGAAGTTGT
GCAAGAACTCATGAAAGCCCCCGATATTGATTTAACGTTGACACGTGGTA
AAAAGACGCAATGCATTGATGGAACTACCGCATTGCATGATGCTGTAGAG
AATAATTTCCTTAATATCGCCGAGTTCTTGTTACAAAAAGGAGGTCGAGA
CCTACTTCATTTGAGAAGAGCTGATGGGAAGACACCACTTGATATTTGCC
GAGAACCGTCGGCGATGAAaaccttgttgaaaagatatgagAATGTGGAG
TCATCTTCTGACTATACTAACGTCTCAATTGTTGCAAATCAACAGGTTGC
TTTTATGAAATTAGATGCTACGACCCAAAGACTATGGAGTCGATTCATTA
CTATGTAGATGTATCCTGGAAGAGCTGTTCGGAAGGAACACCCACAATTA
CGCACGCCCGTCAAAGACCTTCAAACCAGAGTAGCCCAGCAATCACCATC
GAATTCAGTGTCACCTTTGGTTTCACCCAAACGACTCAATAAACCGAACG
GAAAAGGTGAAACACTTTTGCACGTGGCTTGTAATAAGCGCAAAATTCAT
CGAATCAAAGCGCTCATCGAAATGGGTGCTAAAGTTAACACACAAGACAA
CGCAGGGTGGACGCCCTTACATGAGGCGTGTTGCTTTGGTAACCACGAAG
TTGTGCAAGAACTCATGAAAGCCCCCGATATTGATTTAACGTTGACACGT
GGTAAAAAGACGCAATGCATTGATGGAACTACCGCATTGCATGATGCTGT
AGAGAATAATTTCCTTAATATCGCCGAGTTCTTGTTACAAAAAGGAGGTC
GAGACCTACTTCATTTGAGAAGAGCTGATGGGAAGACACCACTTGATATT
TGCCGAGAACCGTCGGCGATGAAaaccttgttgaaaagatatgagAATGT
GGAGTCATCTTCTGACTATACTAACGTCTCAATTGTTGCAAATCAACAGG
TTGCTTTTATGAAATTAGATGCTACGACCCAAAGACTATGGAGTCGATTC
ATTACTATGTAGATGTATCCTGGAAGAGCTGTTCGGAAGGAACACCCACA
ATTACGCACGCCCGTCAAAGACCTTCAAACCAGAGTAGCCCAGCAATCAC
CATCGAATTCAGTGTCACCTTTGGTTTCACCCAAACGACTCAATAAACCG
AACGGAAAAGGTGAAACACTTTTGCACGTGGCTTGTAATAAGCGCAAAAT
TCATCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAGTTAACACACAAG
ACAACGCAGGGTGGACGCCCTTACATGAGGCGTGTTGCTTTGGTAACCAC
GAAGTTGTGCAAGAACTCATGAAAGCCCCCGATATTGATTTAACGTTGAC
ACGTGGTAAAAAGACGCAATGCATTGATGGAACTACCGCATTGCATGATG
CTGTAGAGAATAATTTCCTTAATATCGCCGAGTTCTTGTTACAAAAAGGA
GGTCGAGACCTACTTCATTTGAGAAGAGCTGATGGGAAGACACCACTTGA
TATTTGCCGAGAACCGTCGGCGATGAAaaccttgttgaaaagatatgagA
ATGTGGAGTCATCTTCTGACTATACTAACGTCTCAATTGTTGCAAATCAA
CAGGTTGCTTTTATGAAATTAGATGCTACGACCCAAAGACTATGGAGTCG
ATTCATTACTATGTAGATGTATCCTGGAAGAGCTGTTCGGAAGGAACACC
CACAATTACGCACGCCCGTCAAAGACCTTCAAACCAGAGTAGCCCAGCAA
TCACCATCGAATTCAGTGTCACCTTTGGTTTCACCCAAACGACTCAATAA
ACCGAACGGAAAAGGTGAAACACTTTTGCACGTGGCTTGTAATAAGCGCA
AAATTCATCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAGTTAACACA
CAAGACAACGCAGGGTGGACGCCCTTACATGAGGCGTGTTGCTTTGGTAA
CCACGAAGTTGTGCAAGAACTCATGAAAGCCCCCGATATTGATTTAACGT
TGACACGTGGTAAAAAGACGCAATGCATTGATGGAACTACCGCATTGCAT
GATGCTGTAGAGAATAATTTCCTTAATATCGCCGAGTTCTTGTTACAAAA
AGGAGGTCGAGACCTACTTCATTTGAGAAGAGCTGATGGGAAGACACCAC
TTGATATTTGCCGAGAACCGTCGGCGATGAAaaccttgttgaaaagatat
gagAATGTGGAGTCATCTTCTGACTATACTAACGTCTCAATTGTTGCAAA
TCAACAGGTTGCTTTTATGAAATTAGATGCTACGACCCAAAGACTATGGA
GTCGATTCATTACTATGTAGATGTATCCTGGAAGAGCTGTTCGGAAGGAA
CACCCACAATTACGCACGCCCGTCAAAGACCTTCAAACCAGAGTAGCCCA
GCAATCACCATCGAATTCAGTGTCACCTTTGGTTTCACCCAAACGACTCA
ATAAACCGAACGGAAAAGGTGAAACACTTTTGCACGTGGCTTGTAATAAG
CGCAAAATTCATCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAGTTAA
CACACAAGACAACGCAGGGTGGACGCCCTTACATGAGGCGTGTTGCTTTG
GTAACCACGAAGTTGTGCAAGAACTCATGAAAGCCCCCGATATTGATTTA
ACGTTGACACGTGGTAAAAAGACGCAATGCATTGATGGAACTACCGCATT
GCATGATGCTGTAGAGAATAATTTCCTTAATATCGCCGAGTTCTTGTTAC
AAAAAGGAGGTCGAGACCTACTTCATTTGAGAAGAGCTGATGGGAAGACA
CCACTTGATATTTGCCGAGAACCGTCGGCGATGAAaaccttgttgaaaag
atatgagAATGTGGAGTCATCTTCTGACTATACTAACGTCTCAATTGTTG
CAAATCAACAGGTTGCTTTTATGAAATTAGATGCTACGACCCAAAGACTA
TGGAGTCGATTCATTACTATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016121XLOC_016121Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028450-proteinTCONS_00028450-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028450-exon-sc0000681-1491911889:2617..2717TCONS_00028450-exon-sc0000681-1491911889:2617..2717Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1510915933:2617..2717TCONS_00028450-exon-sc0000681-1510915933:2617..2717Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1575043694:2617..2717TCONS_00028450-exon-sc0000681-1575043694:2617..2717Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1491911889:3528..3604TCONS_00028450-exon-sc0000681-1491911889:3528..3604Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1510915933:3528..3604TCONS_00028450-exon-sc0000681-1510915933:3528..3604Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1575043694:3528..3604TCONS_00028450-exon-sc0000681-1575043694:3528..3604Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1491911889:4289..4459TCONS_00028450-exon-sc0000681-1491911889:4289..4459Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1510915933:4289..4459TCONS_00028450-exon-sc0000681-1510915933:4289..4459Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1575043694:4289..4459TCONS_00028450-exon-sc0000681-1575043694:4289..4459Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1491911889:4737..4856TCONS_00028450-exon-sc0000681-1491911889:4737..4856Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1510915933:4737..4856TCONS_00028450-exon-sc0000681-1510915933:4737..4856Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1575043694:4737..4856TCONS_00028450-exon-sc0000681-1575043694:4737..4856Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1491911889:11482..11639TCONS_00028450-exon-sc0000681-1491911889:11482..11639Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1510915933:11482..11639TCONS_00028450-exon-sc0000681-1510915933:11482..11639Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1575043694:11482..11639TCONS_00028450-exon-sc0000681-1575043694:11482..11639Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1491911889:12167..13191TCONS_00028450-exon-sc0000681-1491911889:12167..13191Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1510915933:12167..13191TCONS_00028450-exon-sc0000681-1510915933:12167..13191Clytia hemisphaericaexon
TCONS_00028450-exon-sc0000681-1575043694:12167..13191TCONS_00028450-exon-sc0000681-1575043694:12167..13191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000681supercontigsc0000681:2617..13191 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.85638	1.63711	0.708688	0.644541	0.702328	1.22318e-06	1.03802	0.00274434	0	0	0.46309	0.803854	0.426413	0	0	0	0	0	0.168573	0.203275	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00028450 vs. Swiss-Prot (Human)
Match: SLF1 (SMC5-SMC6 complex localization factor protein 1 OS=Homo sapiens GN=SLF1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.940e-24
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:  157 LNKPNGKGETLLHVACNKRKIHRIKALIEM-GAKVNTQDNAGWTPLHEACCFGNHEVVQELM-KAPDIDLTLTRGKKTQCIDGTTALHDAVENNFLNIAEFLLQKGGRDLLHLRRADGKTPLDICREPSAMKTLL 555
             +K N KGET LH AC   ++ ++  L+ + G  +N +DNAGWTPLHEAC +GN   VQE++ + P++DL LT+      +DG T LHDA+ N  + I + LLQ GG  LL  R A G+ PLD    P   + L 
Sbjct:  800 FHKTNLKGETALHRACINNQVEKLILLLSLPGIDINVKDNAGWTPLHEACNYGNTVCVQEILQRCPEVDL-LTQ------VDGVTPLHDALSNGHVEIGKLLLQHGGPVLLQQRNAKGELPLDYVVSPQIKEELF 927
The following BLAST results are available for this feature:
BLAST of TCONS_00028450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLF11.940e-2443.70SMC5-SMC6 complex localization factor protein 1 OS... [more]
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