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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028449 ID=TCONS_00028449|Name=TCONS_00028449|organism=Clytia hemisphaerica|type=transcript|length=580bp
tttttttcgaaaaaaagaaaagtctgAATGAGACAAACATTCTAAATTTC
CtgaaaacttttttagtttttagaaaAGTCACTAAATAAATACACAGAAA
ACACCATCGATGGTCGatggtcgatttttaacgtttttgagcaccttcag
aaaACGCAGCCAAGTTGACATCAAAGATACAAATCATCACTTATTGAAGA
AGTTAAGGCTTTCACTAATTTACCAAACTTTATGGGGACAACGTCATGAA
TTGGCTTTGAACTCCACTGTCAAGGAGTTTGTGGAGATGACAGTATCGCT
CTATCAAATCAAAGACAACTCGACTGAGGCTCTCCAATTACGACATATGT
TCATTGGTCTTATGCGCGTCATAGCTGAATGCTGTTCCGTGAAAGATAAA
CTTTCTACAGGCTATTATCATGGCAATGACGCAAAAAGCTTTTGTGGATA
TTTTACAGAATACAGCTTGCTATTACTTAAGTCCCCTGACACACTGCACC
GTATGAAAGTAATATTTTTGCGTGAGATTGGCGATACTTGGATAACGTAT
CGTGTATGCGAGGCCTTACTAGACCGGANN Run BLAST on NCBI protein sequence of TCONS_00028449-protein >TCONS_00028449-protein ID=TCONS_00028449-protein|Name=TCONS_00028449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MVDGRFLTFLSTFRKRSQVDIKDTNHHLLKKLRLSLIYQTLWGQRHELAL
NSTVKEFVEMTVSLYQIKDNSTEALQLRHMFIGLMRVIAECCSVKDKLST
GYYHGNDAKSFCGYFTEYSLLLLKSPDTLHRMKVIFLREIGDTWITYRVC
EALLDRX Run BLAST on NCBI transcript from alignment at sc0000681:1010..2364+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028449 ID=TCONS_00028449|Name=TCONS_00028449|organism=Clytia hemisphaerica|type=transcript|length=1355bp|location=Sequence derived from alignment at sc0000681:1010..2364+ (Clytia hemisphaerica)
tttttttcgaaaaaaagaaaagtctgAATGAGACAAACATTCTAAATTTC
CtgaaaacttttttagtttttagaaaAGTCACTAAATAAATACACAGAAA
ACACCATCGATGGTCGatggtcgatttttaacgtttttgagcaccttcag
aaagtaacttttttattcaatagagcgtaactttcgatctaatgaaccga
atttaataaatgacccatcataatttaagtttatctttcttctttccaat
gaaataggaattgttcttttaaaatttttagatttcgaggaaattaagtt
ttaaagagagaaacttttttgtggcgcactcGGTAGCTTTGTCTAGGTTT
TACGTATTATATAAATTGACCCATATAATAATTGGTGCTACCATTAGGGG
ACAATGTACTAAAGTGTTTggtcaaagatggcggatatagctttgtCTAG
GTTTTGAATACAGGCCAGTGGGAATATGGTcctcatttaaaaaaatccta
aaGCTGAAGAGAGAAtaataagaattttattttaaatgttttatctTAAA
CTGTTTTTCAGACGCAGCCAAGTTGACATCAAAGATACAAATCATCACTT
ATTGAAGAAGTTAAGGCTTTCACTAATTTACCAAACTTTATGGGGACAAC
GTCATGAATTGGCTTTGAACTCCACTGTCAAGGAGTTTGTGGAGATGACA
GTATCGCTCTATCAAATCAAAGACAACTCGACTGAGGTAAGGAGTGAtcc
tttttttgatgaaatcagAAACACATAGATGTAATTACATTTATCAGTCA
ATAATAGAGATCAATTTATTTATCCTATACTCAAGAGCTTCGGAGTTTCG
TGTcgtttcaggcagtcttcagtcTTTTTATGTAATTAAATTCATGCATT
TCTCTTAGCTTTCTTAAAGTggcgagaaaaagaaaaaatattgattaaCG
TTTGTTAATCTAAGCTCTGTTTTCCCCTATGTTTTCAGCCTGTTTTCGGT
TTCACCAACTGTACGGTCATTGGAGATTGGAGAATATTACCATTACCGAA
TTCTTTCCCAATACTTTGTTTAATGACTAAAATCTTTGTCTTAATATTTT
TAGGCTCTCCAATTACGACATATGTTCATTGGTCTTATGCGCGTCATAGC
TGAATGCTGTTCCGTGAAAGATAAACTTTCTACAGGCTATTATCATGGCA
ATGACGCAAAAAGCTTTTGTGGATATTTTACAGAATACAGCTTGCTATTA
CTTAAGTCCCCTGACACACTGCACCGTATGAAAGTAATATTTTTGCGTGA
GATTGGCGATACTTGGATAACGTATCGTGTATGCGAGGCCTTACTAGACC
GGANN Coding sequence (CDS) from alignment at sc0000681:1010..2364+ >TCONS_00028449 ID=TCONS_00028449|Name=TCONS_00028449|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0000681:1010..2364+ (Clytia hemisphaerica)
ATGGTCGatggtcgatttttaacgtttttgagcaccttcagaaaACGCAG
CCAAGTTGACATCAAAGATACAAATCATCACTTATTGAAGAAGTTAAGGC
TTTCACTAATTTACCAAACTTTATGGGGACAACGTCATGAATTGGCTTTG
AACTCCACTGTCAAGGAGTTTGTGGAGATGACAGTATCGCTCTATCAAAT
CAAAGACAACTCGACTGAGGCTCTCCAATTACGACATATGTTCATTGGTC
TTATGCGCGTCATAGCTGAATGCTGTTCCGTGAAAGATAAACTTTCTACA
GGCTATTATCATGGCAATGACGCAAAAAGCTTTTGTGGATATTTTACAGA
ATACAGCTTGCTATTACTTAAGTCCCCTGACACACTGCACCGTATGAAAG
TAATATTTTTGCGTGAGATTGGCGATACTTGGATAACGTATCGTGTATGC
GAGGCCTTACTAGACCGGANNATGGTCGatggtcgatttttaacgttttt
gagcaccttcagaaaACGCAGCCAAGTTGACATCAAAGATACAAATCATC
ACTTATTGAAGAAGTTAAGGCTTTCACTAATTTACCAAACTTTATGGGGA
CAACGTCATGAATTGGCTTTGAACTCCACTGTCAAGGAGTTTGTGGAGAT
GACAGTATCGCTCTATCAAATCAAAGACAACTCGACTGAGGCTCTCCAAT
TACGACATATGTTCATTGGTCTTATGCGCGTCATAGCTGAATGCTGTTCC
GTGAAAGATAAACTTTCTACAGGCTATTATCATGGCAATGACGCAAAAAG
CTTTTGTGGATATTTTACAGAATACAGCTTGCTATTACTTAAGTCCCCTG
ACACACTGCACCGTATGAAAGTAATATTTTTGCGTGAGATTGGCGATACT
TGGATAACGTATCGTGTATGCGAGGCCTTACTAGACCGGANNATGGTCGa
tggtcgatttttaacgtttttgagcaccttcagaaaACGCAGCCAAGTTG
ACATCAAAGATACAAATCATCACTTATTGAAGAAGTTAAGGCTTTCACTA
ATTTACCAAACTTTATGGGGACAACGTCATGAATTGGCTTTGAACTCCAC
TGTCAAGGAGTTTGTGGAGATGACAGTATCGCTCTATCAAATCAAAGACA
ACTCGACTGAGGCTCTCCAATTACGACATATGTTCATTGGTCTTATGCGC
GTCATAGCTGAATGCTGTTCCGTGAAAGATAAACTTTCTACAGGCTATTA
TCATGGCAATGACGCAAAAAGCTTTTGTGGATATTTTACAGAATACAGCT
TGCTATTACTTAAGTCCCCTGACACACTGCACCGTATGAAAGTAATATTT
TTGCGTGAGATTGGCGATACTTGGATAACGTATCGTGTATGCGAGGCCTT
ACTAGACCGGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028449-exon-sc0000681-1491911889:1010..1162 | TCONS_00028449-exon-sc0000681-1491911889:1010..1162 | Clytia hemisphaerica | exon |
| TCONS_00028449-exon-sc0000681-1510915933:1010..1162 | TCONS_00028449-exon-sc0000681-1510915933:1010..1162 | Clytia hemisphaerica | exon |
| TCONS_00028449-exon-sc0000681-1575043694:1010..1162 | TCONS_00028449-exon-sc0000681-1575043694:1010..1162 | Clytia hemisphaerica | exon |
| TCONS_00028449-exon-sc0000681-1491911889:1571..1745 | TCONS_00028449-exon-sc0000681-1491911889:1571..1745 | Clytia hemisphaerica | exon |
| TCONS_00028449-exon-sc0000681-1510915933:1571..1745 | TCONS_00028449-exon-sc0000681-1510915933:1571..1745 | Clytia hemisphaerica | exon |
| TCONS_00028449-exon-sc0000681-1575043694:1571..1745 | TCONS_00028449-exon-sc0000681-1575043694:1571..1745 | Clytia hemisphaerica | exon |
| TCONS_00028449-exon-sc0000681-1491911889:2113..2364 | TCONS_00028449-exon-sc0000681-1491911889:2113..2364 | Clytia hemisphaerica | exon |
| TCONS_00028449-exon-sc0000681-1510915933:2113..2364 | TCONS_00028449-exon-sc0000681-1510915933:2113..2364 | Clytia hemisphaerica | exon |
| TCONS_00028449-exon-sc0000681-1575043694:2113..2364 | TCONS_00028449-exon-sc0000681-1575043694:2113..2364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000681 | supercontig | sc0000681:1010..2364 + |
Blast
The following BLAST results are available for this feature:
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