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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028442 ID=TCONS_00028442|Name=TCONS_00028442|organism=Clytia hemisphaerica|type=transcript|length=3229bp
TCCCCTCCCAGAACCAAATAAGTTTTAATTGGGATAGTTACAAACAAACG
TGTCAAAAGAAAAGAAGCAGATCTAAGGAAATTGTGACCGAAGCAAAAGA
ACTATGTTACGCCATGCCATCTTTTTGGTTTTCTGTCTCATCCAATTTGA
CATCTCATCTCAGCACTCAACAACTCTCCTTGGTAAAGGAGTACCATGTC
AAGCGATAGATTATACCTTGAAAATTGAGTTGAGCTCTCCTGGATGCCCT
GTACCACGCAATGTAGTTATGACTTCAAAGAAATGTGTTGGCTCatgtaa
aacaacaaaaaaagatgGAACTACCGACAAATCTGGAGACTCGAACCATT
GTTTTGCATGTAAAGCTCAAATTAAAACGGTAACTGCTATTGTTCCTTGT
AGCAATGCAACTCACACATGGAGACATTTTCGACAAGTACAAATTGTTAA
AAGCTGTTCATGTAATAATGTTTGTCGGGCTACAGGAATAAACTTTCTTC
AGAAATTGGGAAAACAGAAGAATGATGGGAAGAAGTTGATCGACTCATGA
GTAATATTTTTTAGATAAAGACAATAAACAAACACATACACAGTGAGTCT
CAGTAAGACAACAAGAAAAATCCACATCTTTGCGACTCTTATTTAGTTAG
TCGGTATAGTTAGAGGATTCTCTCAAAACATATCTTATGCgttatttttg
aactttttcattttattttgagcTTAATTTTACAGCTAACATGTATATAA
TAAATTGTCAATAATTGTTAAAATTAATAAGTAAATAATAAGTTCTGTAA
GTGTCAGATTAACAAGCTAATCCCGGGGAGgttactaggtttgcgagatg
gCAGGTATGGGCgagccaaaaattgaaaatcaacccatagagagagaaaa
aattagcgtttttgaGACCCTTAAAGTCTTAGGAAGCCTTTTTCTCAAAC
ATTCTGTTAATTTTCACTCGGTTTTTAtccaaattttagaaaaacacgAC
CTTTTGAGAGAGGATTTTCGTGAGTTTTGGACCCTTAAAGAGAcccaatt
tgctttttaatggtttttgtacccctttgagagactttcgaggatctcct
gtctaaatttgaaaggaaaaggATATCGTGACAAATgaatacatgctttt
ttatatGGACCAAACTTAGGCTGAGAGTCGgctgttttcattttcttcgt
GAGTTCCAGGGTTAAATTGGTCTGAATAAGCTTACTTTATTAACTTGGTG
GACTTCAGTCAGCATTTTCTTAAAgccatttctgaaatctgagagTGAAG
ATTTGTTCTAGGCTGCTTGCATCCTCTAAAGAATTCGTGCTTCTTATACT
ACttatactacctgcggttttgtagaggtctgcgattcaaacTAGGTTTG
TTCCTAATTTGCTAAAAATTTGAGTCTCCATTTTGTTACAAGATTGTTCT
AATAAGAAAAGTGCTTAGAATAAATGAACAAaccttttatttaaaattta
ttatgaGAACAATTATGCCaaaagaaattaagaacaatttcttTTTGAGC
ACTAAGCAAGATAAAAATCTATTTACAAGGCTTAAAATATGATTCTGAGC
TTAAGGTTGCAGCCTGTTCCAATTTAACAGCAATGCTGAGCCCACTAGTA
AATTTACTGAATTCTAAGCAATTTAAGTGTCAATAAAATAGTAATGATCA
TAGGAATCCTAGCCCCTATATTTTAATTTTGCCCTAAAAGTCAAAACAAT
TTGATGCTCGAAATGCCAAAAAAAAAGATTATAATAAGAGCAGCCGAGTG
CAGCCGAGCATCAACGTAGATTTACTAGTAAAAAAGACACCCCTGTGTCA
CAGACCCGCTGGAACCGAGTCGCACTGGAAAATTTAGCGAACATTTCGTC
CCCAGTGGGAAAATACCCTGGAATTTCAGCCCCACTGGGAAATTGACTTT
GATTTCATCCCCACTCGAAATTCAATGTTTGAAAATTGCACTCCAAAACT
ATCCCCACTGGATTTTTTAACCTTGAAATAGTAGAGTTTCTATACCCATC
AGATTTTCAGCTACGCCACTTATTGAGACAAGGTATTGATTAGATTAATA
TCTGTTCCATTTAGcaatttagtcaaatttttgaatttactACGTTTTCA
GGAGAACAACACTTGTTACAGAAGGTACTCAAAATCTTTAACGGAGATAA
ATTATTTccataaaaggagaaaaaaaacaaaagaaaaacactttctATTG
TTAATATTGAGAACACCTTCAGTAAGTAGCCACCCTTGTAGAGCTTTCAA
AGAACCCTTTTTTGTTTAAGGTATAAATGGACTGCACTGACGGATTTAAA
ACAATAGACCAAATACGTCGGAAATAAGCaaaaggagtgcaacgctcggt
AATTatgacaatgaaattacaattacaaatctcttccccCGATAAGTTCG
AcagggtctaaaaccgcctGGACCGTGGTCAGTTTATGACTGTTTTCTTT
GTGTAAACAGTTTTATATTTCATTGCTGTCTTTTTCATCTTCTCAAACAT
GTCTCTTTTCCGTAGTGGGCATTCACAATCGATGTAGGTGCATTTACATC
CCCTAACGATAGTTAATTGACGGTAATGTTTCCACGTGTGAGTTGCATTT
TGGCATGGTACACCAGCTGTTATGATTTGAATATCTGGTTGACACATGAC
ACAACGATTAAAAATCCCATTTGCACTTTTCTTCAAATTTGGTTCGTATA
CATGTGGACAAGACCCCAAACATATTTTATTAGGTAATTGAACAATTCTG
TGATATGGACATCCTGGTGAACTTAAATCCAACGGTTGAATAATAGATTG
TTCTTTGCATGGTCCGACAACTGGCGACCGCCTTTGTACGTTTGTTGTGT
ATGATGTGACGATGAAAGAATAGTAATACAGAATGAACACTATGTAATGC
CGGCACATTTTACAAATGTGACAGGtttaaaaaactctttttttctccaa
ctttaaagtgatttttgttgtttcttgccACATAAACACACCATTTAATC
ACCAGTACTTCAATTGAAATGATTCCATTTACTAATTGTATACTTTATAG
TATGCAGACAAAAAGTTTTTACCCTTAGAAAAATTCTAACGTcaactttt
tcattgtttttgttgaaaattgtgttttctttatttttttactttttgaa
attgttttcattcaaagcACTTGAACTAT Run BLAST on NCBI protein sequence of TCONS_00028442-protein >TCONS_00028442-protein ID=TCONS_00028442-protein|Name=TCONS_00028442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MCRHYIVFILYYYSFIVTSYTTNVQRRSPVVGPCKEQSIIQPLDLSSPGC
PYHRIVQLPNKICLGSCPHVYEPNLKKSANGIFNRCVMCQPDIQIITAGV
PCQNATHTWKHYRQLTIVRGCKCTYIDCECPLRKRDMFEKMKKTAMKYKT
VYTKKTVIN Run BLAST on NCBI transcript from alignment at sc0000678:111239..114467 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028442 ID=TCONS_00028442|Name=TCONS_00028442|organism=Clytia hemisphaerica|type=transcript|length=3229bp|location=Sequence derived from alignment at sc0000678:111239..114467 (Clytia hemisphaerica)
ATAGTTCAAGTgctttgaatgaaaacaatttcaaaaagtaaaaaaataaa
gaaaacacaattttcaacaaaaacaatgaaaaagttgACGTTAGAATTTT
TCTAAGGGTAAAAACTTTTTGTCTGCATACTATAAAGTATACAATTAGTA
AATGGAATCATTTCAATTGAAGTACTGGTGATTAAATGGTGTGTTTATGT
ggcaagaaacaacaaaaatcactttaaagttggagaaaaaaagagttttt
taaaCCTGTCACATTTGTAAAATGTGCCGGCATTACATAGTGTTCATTCT
GTATTACTATTCTTTCATCGTCACATCATACACAACAAACGTACAAAGGC
GGTCGCCAGTTGTCGGACCATGCAAAGAACAATCTATTATTCAACCGTTG
GATTTAAGTTCACCAGGATGTCCATATCACAGAATTGTTCAATTACCTAA
TAAAATATGTTTGGGGTCTTGTCCACATGTATACGAACCAAATTTGAAGA
AAAGTGCAAATGGGATTTTTAATCGTTGTGTCATGTGTCAACCAGATATT
CAAATCATAACAGCTGGTGTACCATGCCAAAATGCAACTCACACGTGGAA
ACATTACCGTCAATTAACTATCGTTAGGGGATGTAAATGCACCTACATCG
ATTGTGAATGCCCACTACGGAAAAGAGACATGTTTGAGAAGATGAAAAAG
ACAGCAATGAAATATAAAACTGTTTACACAAAGAAAACAGTCATAAACTG
ACCACGGTCCaggcggttttagaccctgTCGAACTTATCGggggaagaga
tttgtaattgtaatttcattgtcatAATTaccgagcgttgcactcctttt
GCTTATTTCCGACGTATTTGGTCTATTGTTTTAAATCCGTCAGTGCAGTC
CATTTATACCTTAAACAAAAAAGGGTTCTTTGAAAGCTCTACAAGGGTGG
CTACTTACTGAAGGTGTTCTCAATATTAACAATagaaagtgtttttcttt
tgttttttttctccttttatggAAATAATTTATCTCCGTTAAAGATTTTG
AGTACCTTCTGTAACAAGTGTTGTTCTCCTGAAAACGTagtaaattcaaa
aatttgactaaattgCTAAATGGAACAGATATTAATCTAATCAATACCTT
GTCTCAATAAGTGGCGTAGCTGAAAATCTGATGGGTATAGAAACTCTACT
ATTTCAAGGTTAAAAAATCCAGTGGGGATAGTTTTGGAGTGCAATTTTCA
AACATTGAATTTCGAGTGGGGATGAAATCAAAGTCAATTTCCCAGTGGGG
CTGAAATTCCAGGGTATTTTCCCACTGGGGACGAAATGTTCGCTAAATTT
TCCAGTGCGACTCGGTTCCAGCGGGTCTGTGACACAGGGGTGTCTTTTTT
ACTAGTAAATCTACGTTGATGCTCGGCTGCACTCGGCTGCTCTTATTATA
ATCTTTTTTTTTGGCATTTCGAGCATCAAATTGTTTTGACTTTTAGGGCA
AAATTAAAATATAGGGGCTAGGATTCCTATGATCATTACTATTTTATTGA
CACTTAAATTGCTTAGAATTCAGTAAATTTACTAGTGGGCTCAGCATTGC
TGTTAAATTGGAACAGGCTGCAACCTTAAGCTCAGAATCATATTTTAAGC
CTTGTAAATAGATTTTTATCTTGCTTAGTGCTCAAAaagaaattgttctt
aatttcttttGGCATAATTGTTCtcataataaattttaaataaaaggtTT
GTTCATTTATTCTAAGCACTTTTCTTATTAGAACAATCTTGTAACAAAAT
GGAGACTCAAATTTTTAGCAAATTAGGAACAAACCTAgtttgaatcgcag
acctctacaaaaccgcaggtagtataaGTAGTATAAGAAGCACGAATTCT
TTAGAGGATGCAAGCAGCCTAGAACAAATCTTCActctcagatttcagaa
atggcTTTAAGAAAATGCTGACTGAAGTCCACCAAGTTAATAAAGTAAGC
TTATTCAGACCAATTTAACCCTGGAACTCacgaagaaaatgaaaacagcC
GACTCTCAGCCTAAGTTTGGTCCatataaaaaagcatgtattcATTTGTC
ACGATATccttttcctttcaaatttagacaggagatcctcgaaagtctct
caaaggggtacaaaaaccattaaaaagcaaattgggTCTCTTTAAGGGTC
CAAAACTCACGAAAATCCTCTCTCAAAAGGTcgtgtttttctaaaatttg
gaTAAAAACCGAGTGAAAATTAACAGAATGTTTGAGAAAAAGGCTTCCTA
AGACTTTAAGGGTCtcaaaaacgctaattttttctctctctatgggttga
ttttcaatttttggctcGCCCATACCTGccatctcgcaaacctagtaacC
TCCCCGGGATTAGCTTGTTAATCTGACACTTACAGAACTTATTATTTACT
TATTAATTTTAACAATTATTGACAATTTATTATATACATGTTAGCTGTAA
AATTAAgctcaaaataaaatgaaaaagttcaaaaataacGCATAAGATAT
GTTTTGAGAGAATCCTCTAACTATACCGACTAACTAAATAAGAGTCGCAA
AGATGTGGATTTTTCTTGTTGTCTTACTGAGACTCACTGTGTATGTGTTT
GTTTATTGTCTTTATCTAAAAAATATTACTCATGAGTCGATCAACTTCTT
CCCATCATTCTTCTGTTTTCCCAATTTCTGAAGAAAGTTTATTCCTGTAG
CCCGACAAACATTATTACATGAACAGCTTTTAACAATTTGTACTTGTCGA
AAATGTCTCCATGTGTGAGTTGCATTGCTACAAGGAACAATAGCAGTTAC
CGTTTTAATTTGAGCTTTACATGCAAAACAATGGTTCGAGTCTCCAGATT
TGTCGGTAGTTCcatctttttttgttgttttacatGAGCCAACACATTTC
TTTGAAGTCATAACTACATTGCGTGGTACAGGGCATCCAGGAGAGCTCAA
CTCAATTTTCAAGGTATAATCTATCGCTTGACATGGTACTCCTTTACCAA
GGAGAGTTGTTGAGTGCTGAGATGAGATGTCAAATTGGATGAGACAGAAA
ACCAAAAAGATGGCATGGCGTAACATAGTTCTTTTGCTTCGGTCACAATT
TCCTTAGATCTGCTTCTTTTCTTTTGACACGTTTGTTTGTAACTATCCCA
ATTAAAACTTATTTGGTTCTGGGAGGGGA Coding sequence (CDS) from alignment at sc0000678:111239..114467 >TCONS_00028442 ID=TCONS_00028442|Name=TCONS_00028442|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000678:111239..114467 (Clytia hemisphaerica)
ATGTGCCGGCATTACATAGTGTTCATTCTGTATTACTATTCTTTCATCGT
CACATCATACACAACAAACGTACAAAGGCGGTCGCCAGTTGTCGGACCAT
GCAAAGAACAATCTATTATTCAACCGTTGGATTTAAGTTCACCAGGATGT
CCATATCACAGAATTGTTCAATTACCTAATAAAATATGTTTGGGGTCTTG
TCCACATGTATACGAACCAAATTTGAAGAAAAGTGCAAATGGGATTTTTA
ATCGTTGTGTCATGTGTCAACCAGATATTCAAATCATAACAGCTGGTGTA
CCATGCCAAAATGCAACTCACACGTGGAAACATTACCGTCAATTAACTAT
CGTTAGGGGATGTAAATGCACCTACATCGATTGTGAATGCCCACTACGGA
AAAGAGACATGTTTGAGAAGATGAAAAAGACAGCAATGAAATATAAAACT
GTTTACACAAAGAAAACAGTCATAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028442-exon-sc0000678-1491911889:111239..114467 | TCONS_00028442-exon-sc0000678-1491911889:111239..114467 | Clytia hemisphaerica | exon |
| TCONS_00028442-exon-sc0000678-1510915933:111239..114467 | TCONS_00028442-exon-sc0000678-1510915933:111239..114467 | Clytia hemisphaerica | exon |
| TCONS_00028442-exon-sc0000678-1575043694:111239..114467 | TCONS_00028442-exon-sc0000678-1575043694:111239..114467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000678 | supercontig | sc0000678:111239..114467 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004133 | DAN |
Blast
The following BLAST results are available for this feature:
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